CK939527

Overview
NameCK939527
Unique NameCK939527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BACLD (Ribosome-recycling factor OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=frr PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.129e-28
Identity = 58/112 (51.79%), Postives = 81/112 (72.32%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            + K RM++ I   +    +VR GR+NP++LDK+ VEYYG+   L  IA I  P++  L+I PYDK++L  IEKAI  +DLG+TP+NDG +IR+T+P LT ERRKEL+K+V K
Sbjct:    8 ETKERMQKAISAYQRELATVRAGRANPSLLDKVAVEYYGAQTPLNQIASITVPEARMLVITPYDKTALGDIEKAIQKADLGVTPSNDGNIIRITIPPLTEERRKELAKLVKK 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_PELTS (Ribosome-recycling factor OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=frr PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.086e-28
Identity = 56/113 (49.56%), Postives = 85/113 (75.22%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            + ++ M++TI++V+  F S+R GR+ PA+LDK+ V YYG+P  +  +A I+ P++  L++QP+DK+ L  IE+AI+ SDLG+TP +DG VIRL +PQLT ERR EL KV+ K+
Sbjct:    8 EAESNMKKTIEVVKKEFASLRAGRATPALLDKVMVNYYGTPTPVNQLANISVPEARLLVVQPWDKTVLPEIERAILKSDLGITPASDGNVIRLAIPQLTQERRAELMKVIKKK 120          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_DESRM (Ribosome-recycling factor OS=Desulfotomaculum reducens (strain MI-1) GN=frr PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.337e-28
Identity = 56/108 (51.85%), Postives = 83/108 (76.85%), Query Frame = 1
Query:  346 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            M++++D+VR  F S+R GR+ P++LDK+ V YYG+P  L  +A I+ P++  L+IQP+DKS +  +EKAI+ SD+G+TP++DG VIRL +PQLT ERR EL KV+ K+
Sbjct:   13 MKKSVDVVRREFASLRAGRATPSILDKVTVSYYGTPTPLNQLANISVPEARVLVIQPWDKSVIPEVEKAILKSDVGITPSSDGTVIRLIIPQLTQERRTELVKVIKKK 120          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_LEPIN (Ribosome-recycling factor OS=Leptospira interrogans GN=frr PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.104e-28
Identity = 54/109 (49.54%), Postives = 82/109 (75.23%), Query Frame = 1
Query:  334 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            +K +M++TID+V+ +F ++RTGR+NP++++ I V+YYG+   +  +  I+ P+   L+I PYDK  +K IEKAI +S LG+ P NDG VIR+ +P+LT ERRKEL+KVV
Sbjct:   10 MKTKMDKTIDLVKKDFGTIRTGRANPSLVEDIRVDYYGNQTPINQLGNISVPEPRMLVISPYDKGIMKDIEKAIQTSGLGLQPTNDGVVIRIVIPELTGERRKELAKVV 118          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_LEPIC (Ribosome-recycling factor OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=frr PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.104e-28
Identity = 54/109 (49.54%), Postives = 82/109 (75.23%), Query Frame = 1
Query:  334 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            +K +M++TID+V+ +F ++RTGR+NP++++ I V+YYG+   +  +  I+ P+   L+I PYDK  +K IEKAI +S LG+ P NDG VIR+ +P+LT ERRKEL+KVV
Sbjct:   10 MKTKMDKTIDLVKKDFGTIRTGRANPSLVEDIRVDYYGNQTPINQLGNISVPEPRMLVISPYDKGIMKDIEKAIQTSGLGLQPTNDGVVIRIVIPELTGERRKELAKVV 118          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_CLOD6 (Ribosome-recycling factor OS=Clostridium difficile (strain 630) GN=frr PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.104e-28
Identity = 57/111 (51.35%), Postives = 81/111 (72.97%), Query Frame = 1
Query:  334 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            ++ +M  TID ++  F ++R GR+N  MLDKI V+YYG+P  +  I  I+ P+   L+I P+DKS++  IEKAI +SDLG+ P+NDGEVIRL++P LT ERRKEL+K  +K
Sbjct:    9 LEEKMNGTIDALKFEFGTIRAGRANAQMLDKIRVDYYGTPTPINQIGAISVPEPRILMISPWDKSAMHEIEKAIANSDLGLNPSNDGEVIRLSVPALTEERRKELAKKASK 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_CLAM3 (Ribosome-recycling factor OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=frr PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.104e-28
Identity = 57/111 (51.35%), Postives = 83/111 (74.77%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVS-SDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            D + RM + ++ V+ +F SVRTGR+NPA+  K+ VEYYGSP  L  +A +N P++ +L++ PYDK++LK IEKA+V+  +L  T  NDGE++RLTLP+LT +RRKE  K+V
Sbjct:    9 DARDRMGKAVEAVKEDFGSVRTGRANPALFQKVMVEYYGSPTPLGQLASMNNPEARTLIVTPYDKTALKEIEKALVNVPNLSATVGNDGEMVRLTLPELTEDRRKEFVKIV 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_ARTAT (Ribosome-recycling factor OS=Arthrobacter aurescens (strain TC1) GN=frr PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.189e-27
Identity = 52/106 (49.06%), Postives = 82/106 (77.36%), Query Frame = 1
Query:  343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            +M++ +++ + +F S+RTGR+NPA+ +K+ VEYYG+P  L+ +A    PD+ ++LI PYDK++L+ IEKA+  S++G  P+NDG VIR+T+P+LT ERRKE  K+V
Sbjct:   12 KMDKAVEVAKDDFASIRTGRANPALYNKVIVEYYGTPTPLQQLASFGVPDARTILITPYDKTALRDIEKALSDSEVGANPSNDGNVIRVTIPELTKERRKEYVKIV 117          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_NATTJ (Ribosome-recycling factor OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=frr PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.553e-27
Identity = 54/113 (47.79%), Postives = 84/113 (74.34%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            D + +M++ +  +++   S+R GR+NP++L+ I V+YYG    L  +A I+ P+   L++QPYDKS+++ IEKAI+ SD+G+TPNNDG+VIRL +PQLT ERR EL K+V ++
Sbjct:    7 DAEQKMKKALSSLKSELASLRAGRANPSILEGINVDYYGMATPLNQLANISAPEPRLLVVQPYDKSAIEDIEKAILKSDVGLTPNNDGQVIRLAVPQLTEERRNELVKIVRQK 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_LEPBL (Ribosome-recycling factor OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=frr PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.553e-27
Identity = 54/109 (49.54%), Postives = 83/109 (76.15%), Query Frame = 1
Query:  334 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            +K +M++TID+V+ +F +VRTGR+NP++++ I V+YYG+   +  +  I+ P+   L+I PYDK  +K IEKAI +S LG+ P+NDG VIR+ +P+LT ERRKEL+K+V
Sbjct:   10 MKTKMDKTIDLVKKDFGTVRTGRANPSLVEDIRVDYYGTLTPINQLGNISVPEPRMLVISPYDKGIMKDIEKAIQASGLGLQPSNDGVVIRIIIPELTGERRKELAKIV 118          
The following BLAST results are available for this feature:
BLAST of CK939527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_BACLD3.129e-2851.79Ribosome-recycling factor OS=Bacillus licheniformi... [more]
RRF_PELTS4.086e-2849.56Ribosome-recycling factor OS=Pelotomaculum thermop... [more]
RRF_DESRM5.337e-2851.85Ribosome-recycling factor OS=Desulfotomaculum redu... [more]
RRF_LEPIN9.104e-2849.54Ribosome-recycling factor OS=Leptospira interrogan... [more]
RRF_LEPIC9.104e-2849.54Ribosome-recycling factor OS=Leptospira interrogan... [more]
RRF_CLOD69.104e-2851.35Ribosome-recycling factor OS=Clostridium difficile... [more]
RRF_CLAM39.104e-2851.35Ribosome-recycling factor OS=Clavibacter michigane... [more]
RRF_ARTAT1.189e-2749.06Ribosome-recycling factor OS=Arthrobacter aurescen... [more]
RRF_NATTJ1.553e-2747.79Ribosome-recycling factor OS=Natranaerobius thermo... [more]
RRF_LEPBL1.553e-2749.54Ribosome-recycling factor OS=Leptospira borgpeters... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_D04 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939527 ID=CK939527; Name=CK939527; organism=Citrus sinensis; type=EST; length=671bp
GCGGGGAACTANNNTCTTAAGTCTGAGCGAGCGTTCATGGCCACGCACTT
TTCTTCAACAGGGCCCATGCGGTCCATTTTCCAACTGAAATCAAATCCTC
CCAAATGCCTCCTTTTCCTCCCTGATTCTTGTCATAGAAGAGCCGAAACT
GCCACGTGCCGTGCTAGCAGCGTTAGTGTGCGCCAGTGGAGCTCAGCTGC
AAACTACTCTAGACTTGTGAAATTATCCAACAAACCTATCGTTGTAAGAC
AACTGGCACACAAGAGAAATGGAGTTGTGAGGTGTGCAACTATTGAAGAA
ATTGAAGCGGAAAAATCTTCCATTGAGAAGGATGTTAAAGCTAGGATGGA
AAGGACTATCGATATGGTCCGAACCAATTTCAATTCCGTGAGGACAGGAA
GATCGAATCCAGCTATGCTAGATAAGATTGAGGTGGAATACTATGGAAGC
CCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCCCTGATTCAAGTTC
TCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGAGAAGG
CCATAGTAAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTGAAGTC
ATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAAGGAACTGTC
AAAGGTTGTGGCCAAACAGGC
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