CK939527
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BACLD (Ribosome-recycling factor OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=frr PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 3.129e-28 Identity = 58/112 (51.79%), Postives = 81/112 (72.32%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 + K RM++ I + +VR GR+NP++LDK+ VEYYG+ L IA I P++ L+I PYDK++L IEKAI +DLG+TP+NDG +IR+T+P LT ERRKEL+K+V K Sbjct: 8 ETKERMQKAISAYQRELATVRAGRANPSLLDKVAVEYYGAQTPLNQIASITVPEARMLVITPYDKTALGDIEKAIQKADLGVTPSNDGNIIRITIPPLTEERRKELAKLVKK 119
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_PELTS (Ribosome-recycling factor OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=frr PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 4.086e-28 Identity = 56/113 (49.56%), Postives = 85/113 (75.22%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669 + ++ M++TI++V+ F S+R GR+ PA+LDK+ V YYG+P + +A I+ P++ L++QP+DK+ L IE+AI+ SDLG+TP +DG VIRL +PQLT ERR EL KV+ K+ Sbjct: 8 EAESNMKKTIEVVKKEFASLRAGRATPALLDKVMVNYYGTPTPVNQLANISVPEARLLVVQPWDKTVLPEIERAILKSDLGITPASDGNVIRLAIPQLTQERRAELMKVIKKK 120
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_DESRM (Ribosome-recycling factor OS=Desulfotomaculum reducens (strain MI-1) GN=frr PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 5.337e-28 Identity = 56/108 (51.85%), Postives = 83/108 (76.85%), Query Frame = 1 Query: 346 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669 M++++D+VR F S+R GR+ P++LDK+ V YYG+P L +A I+ P++ L+IQP+DKS + +EKAI+ SD+G+TP++DG VIRL +PQLT ERR EL KV+ K+ Sbjct: 13 MKKSVDVVRREFASLRAGRATPSILDKVTVSYYGTPTPLNQLANISVPEARVLVIQPWDKSVIPEVEKAILKSDVGITPSSDGTVIRLIIPQLTQERRTELVKVIKKK 120
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_LEPIN (Ribosome-recycling factor OS=Leptospira interrogans GN=frr PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 9.104e-28 Identity = 54/109 (49.54%), Postives = 82/109 (75.23%), Query Frame = 1 Query: 334 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660 +K +M++TID+V+ +F ++RTGR+NP++++ I V+YYG+ + + I+ P+ L+I PYDK +K IEKAI +S LG+ P NDG VIR+ +P+LT ERRKEL+KVV Sbjct: 10 MKTKMDKTIDLVKKDFGTIRTGRANPSLVEDIRVDYYGNQTPINQLGNISVPEPRMLVISPYDKGIMKDIEKAIQTSGLGLQPTNDGVVIRIVIPELTGERRKELAKVV 118
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_LEPIC (Ribosome-recycling factor OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=frr PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 9.104e-28 Identity = 54/109 (49.54%), Postives = 82/109 (75.23%), Query Frame = 1 Query: 334 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660 +K +M++TID+V+ +F ++RTGR+NP++++ I V+YYG+ + + I+ P+ L+I PYDK +K IEKAI +S LG+ P NDG VIR+ +P+LT ERRKEL+KVV Sbjct: 10 MKTKMDKTIDLVKKDFGTIRTGRANPSLVEDIRVDYYGNQTPINQLGNISVPEPRMLVISPYDKGIMKDIEKAIQTSGLGLQPTNDGVVIRIVIPELTGERRKELAKVV 118
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_CLOD6 (Ribosome-recycling factor OS=Clostridium difficile (strain 630) GN=frr PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 9.104e-28 Identity = 57/111 (51.35%), Postives = 81/111 (72.97%), Query Frame = 1 Query: 334 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 ++ +M TID ++ F ++R GR+N MLDKI V+YYG+P + I I+ P+ L+I P+DKS++ IEKAI +SDLG+ P+NDGEVIRL++P LT ERRKEL+K +K Sbjct: 9 LEEKMNGTIDALKFEFGTIRAGRANAQMLDKIRVDYYGTPTPINQIGAISVPEPRILMISPWDKSAMHEIEKAIANSDLGLNPSNDGEVIRLSVPALTEERRKELAKKASK 119
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_CLAM3 (Ribosome-recycling factor OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=frr PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 9.104e-28 Identity = 57/111 (51.35%), Postives = 83/111 (74.77%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVS-SDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660 D + RM + ++ V+ +F SVRTGR+NPA+ K+ VEYYGSP L +A +N P++ +L++ PYDK++LK IEKA+V+ +L T NDGE++RLTLP+LT +RRKE K+V Sbjct: 9 DARDRMGKAVEAVKEDFGSVRTGRANPALFQKVMVEYYGSPTPLGQLASMNNPEARTLIVTPYDKTALKEIEKALVNVPNLSATVGNDGEMVRLTLPELTEDRRKEFVKIV 119
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_ARTAT (Ribosome-recycling factor OS=Arthrobacter aurescens (strain TC1) GN=frr PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.189e-27 Identity = 52/106 (49.06%), Postives = 82/106 (77.36%), Query Frame = 1 Query: 343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660 +M++ +++ + +F S+RTGR+NPA+ +K+ VEYYG+P L+ +A PD+ ++LI PYDK++L+ IEKA+ S++G P+NDG VIR+T+P+LT ERRKE K+V Sbjct: 12 KMDKAVEVAKDDFASIRTGRANPALYNKVIVEYYGTPTPLQQLASFGVPDARTILITPYDKTALRDIEKALSDSEVGANPSNDGNVIRVTIPELTKERRKEYVKIV 117
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_NATTJ (Ribosome-recycling factor OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=frr PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.553e-27 Identity = 54/113 (47.79%), Postives = 84/113 (74.34%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669 D + +M++ + +++ S+R GR+NP++L+ I V+YYG L +A I+ P+ L++QPYDKS+++ IEKAI+ SD+G+TPNNDG+VIRL +PQLT ERR EL K+V ++ Sbjct: 7 DAEQKMKKALSSLKSELASLRAGRANPSILEGINVDYYGMATPLNQLANISAPEPRLLVVQPYDKSAIEDIEKAILKSDVGLTPNNDGQVIRLAVPQLTEERRNELVKIVRQK 119
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_LEPBL (Ribosome-recycling factor OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=frr PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.553e-27 Identity = 54/109 (49.54%), Postives = 83/109 (76.15%), Query Frame = 1 Query: 334 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660 +K +M++TID+V+ +F +VRTGR+NP++++ I V+YYG+ + + I+ P+ L+I PYDK +K IEKAI +S LG+ P+NDG VIR+ +P+LT ERRKEL+K+V Sbjct: 10 MKTKMDKTIDLVKKDFGTVRTGRANPSLVEDIRVDYYGTLTPINQLGNISVPEPRMLVISPYDKGIMKDIEKAIQASGLGLQPSNDGVVIRIIIPELTGERRKELAKIV 118 The following BLAST results are available for this feature:
BLAST of CK939527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939527 ID=CK939527; Name=CK939527; organism=Citrus sinensis; type=EST; length=671bpback to top |