CK939496

Overview
NameCK939496
Unique NameCK939496
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length173
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939496 vs. ExPASy Swiss-Prot
Match: RR3_GOSBA (30S ribosomal protein S3, chloroplastic OS=Gossypium barbadense GN=rps3 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.402e-17
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 1
Query:   25 MGQXXNPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKK 171
            MGQ  NPLGFRLGTTQSHHSLWFA+PK Y EGLQED+KIR+ IKNY++K
Sbjct:    1 MGQKINPLGFRLGTTQSHHSLWFAQPKKYSEGLQEDKKIRDCIKNYVQK 49          
BLAST of CK939496 vs. ExPASy Swiss-Prot
Match: RR3_CUSRE (Plastid 30S ribosomal protein S3 OS=Cuscuta reflexa GN=rps3 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.402e-17
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 1
Query:   25 MGQXXNPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKK 171
            MGQ  NPLGFRLGTTQ HHSLWF++PKNY E LQED+KIR+FI NY+KK
Sbjct:    1 MGQKINPLGFRLGTTQDHHSLWFSQPKNYSESLQEDKKIRDFINNYVKK 49          
BLAST of CK939496 vs. ExPASy Swiss-Prot
Match: RR3_WHEAT (30S ribosomal protein S3, chloroplastic OS=Triticum aestivum GN=rps3 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.831e-17
Identity = 39/49 (79.59%), Postives = 43/49 (87.76%), Query Frame = 1
Query:   25 MGQXXNPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKK 171
            MGQ  NPLGFRLGTTQ HHS WFA+PKNY EGLQED+KIR+ IKNYI+K
Sbjct:    1 MGQKINPLGFRLGTTQKHHSFWFAQPKNYSEGLQEDKKIRDCIKNYIQK 49          
BLAST of CK939496 vs. ExPASy Swiss-Prot
Match: RR3_SOLTU (30S ribosomal protein S3, chloroplastic OS=Solanum tuberosum GN=rps3 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.831e-17
Identity = 38/49 (77.55%), Postives = 44/49 (89.80%), Query Frame = 1
Query:   25 MGQXXNPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKK 171
            MGQ  NPLGFRLGTTQ HHSLWF++PKNY EGLQED+KIR+ IKNY++K
Sbjct:    1 MGQKINPLGFRLGTTQGHHSLWFSQPKNYSEGLQEDKKIRDCIKNYVQK 49          
BLAST of CK939496 vs. ExPASy Swiss-Prot
Match: RR3_SOLBU (30S ribosomal protein S3, chloroplastic OS=Solanum bulbocastanum GN=rps3 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.831e-17
Identity = 38/49 (77.55%), Postives = 44/49 (89.80%), Query Frame = 1
Query:   25 MGQXXNPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKK 171
            MGQ  NPLGFRLGTTQ HHSLWF++PKNY EGLQED+KIR+ IKNY++K
Sbjct:    1 MGQKINPLGFRLGTTQGHHSLWFSQPKNYSEGLQEDKKIRDCIKNYVQK 49          
BLAST of CK939496 vs. ExPASy Swiss-Prot
Match: RR3_PLAOC (30S ribosomal protein S3, chloroplastic OS=Platanus occidentalis GN=rps3 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.831e-17
Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = 1
Query:   25 MGQXXNPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKK 171
            MGQ  NPLGFRLGTTQ+HHS+WFA+PK+Y EGLQEDQKIR+ IKNY++K
Sbjct:    1 MGQKINPLGFRLGTTQNHHSVWFAQPKSYSEGLQEDQKIRDCIKNYVQK 49          
BLAST of CK939496 vs. ExPASy Swiss-Prot
Match: RR3_MORIN (30S ribosomal protein S3, chloroplastic OS=Morus indica GN=rps3 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.831e-17
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 1
Query:   25 MGQXXNPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKK 171
            MGQ  NPLGFRLG TQ HHSLWFA+PKNY E LQEDQKIR+ IKNYIKK
Sbjct:    1 MGQKINPLGFRLGATQGHHSLWFAQPKNYSEDLQEDQKIRDCIKNYIKK 49          
BLAST of CK939496 vs. ExPASy Swiss-Prot
Match: RR3_LOLPR (30S ribosomal protein S3, chloroplastic OS=Lolium perenne GN=rps3 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.831e-17
Identity = 39/49 (79.59%), Postives = 43/49 (87.76%), Query Frame = 1
Query:   25 MGQXXNPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKK 171
            MGQ  NPLGFRLGTTQ HHS WFA+PKNY EGLQED+KIR+ IKNYI+K
Sbjct:    1 MGQKINPLGFRLGTTQKHHSFWFAQPKNYSEGLQEDKKIRDCIKNYIQK 49          
BLAST of CK939496 vs. ExPASy Swiss-Prot
Match: RR3_HORVU (30S ribosomal protein S3, chloroplastic OS=Hordeum vulgare GN=rps3 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.831e-17
Identity = 39/49 (79.59%), Postives = 43/49 (87.76%), Query Frame = 1
Query:   25 MGQXXNPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKK 171
            MGQ  NPLGFRLGTTQ HHS WFA+PKNY EGLQED+KIR+ IKNYI+K
Sbjct:    1 MGQKINPLGFRLGTTQKHHSFWFAQPKNYSEGLQEDKKIRDCIKNYIQK 49          
BLAST of CK939496 vs. ExPASy Swiss-Prot
Match: RR3_OLIPU (30S ribosomal protein S3, chloroplastic OS=Olimarabidopsis pumila GN=rps3 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.123e-17
Identity = 38/49 (77.55%), Postives = 44/49 (89.80%), Query Frame = 1
Query:   25 MGQXXNPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKK 171
            MGQ  NPLGFRLGTTQSHHSLWFA+PK Y EGL+ED+KIR+ IKNY++K
Sbjct:    1 MGQKINPLGFRLGTTQSHHSLWFAQPKKYSEGLEEDKKIRDCIKNYVQK 49          
The following BLAST results are available for this feature:
BLAST of CK939496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
RR3_GOSBA1.402e-1779.5930S ribosomal protein S3, chloroplastic OS=Gossypi... [more]
RR3_CUSRE1.402e-1777.55Plastid 30S ribosomal protein S3 OS=Cuscuta reflex... [more]
RR3_WHEAT1.831e-1779.5930S ribosomal protein S3, chloroplastic OS=Triticu... [more]
RR3_SOLTU1.831e-1777.5530S ribosomal protein S3, chloroplastic OS=Solanum... [more]
RR3_SOLBU1.831e-1777.5530S ribosomal protein S3, chloroplastic OS=Solanum... [more]
RR3_PLAOC1.831e-1777.5530S ribosomal protein S3, chloroplastic OS=Platanu... [more]
RR3_MORIN1.831e-1781.6330S ribosomal protein S3, chloroplastic OS=Morus i... [more]
RR3_LOLPR1.831e-1779.5930S ribosomal protein S3, chloroplastic OS=Lolium ... [more]
RR3_HORVU1.831e-1779.5930S ribosomal protein S3, chloroplastic OS=Hordeum... [more]
RR3_OLIPU3.123e-1777.5530S ribosomal protein S3, chloroplastic OS=Olimara... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_H07 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939496 ID=CK939496; Name=CK939496; organism=Citrus sinensis; type=EST; length=173bp
GGGGATACATATAAATGGGGGATTATGGGACAAANNNTAAATCCACTAGG
TTTCCGGCTTGGTACAACACAAAGTCATCATTCTCTTTGGTTTGCAAAAC
CAAAAAACTATTGCGAGGGTCTACAAGAAGATCAAAAAATACGAAACTTT
ATTAAGAATTATATAAAAAAAAA
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