CK939467

Overview
NameCK939467
Unique NameCK939467
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939467 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAB (Proteasome subunit alpha OS=Pyrococcus abyssi GN=psmA PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.257e-50
Identity = 113/227 (49.78%), Postives = 150/227 (66.08%), Query Frame = 2
Query:  119 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK-ETSGQETIKLAIRALLEVVES-GGKNIEVAVMT-REKGLKQLDEAEID 790
            A YDRAITVFSPDG LFQV YA EAV++G  AVGV+  D +VL VEK+ T +L +  S  KI  +D+HIA A +G+ ADARVL+NRAR+E Q HRLT  +P  +  I + I  L+Q +TQ GGVRPFG + L+ G +     P LY+TDPSG + AWKA A G   N+     E  Y+ + +  E IKLAI AL + +E    +NIEVAV+T ++K  ++L + EI+
Sbjct:    8 AGYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCKDGVVLAVEKRITSRLIEPESYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGGVRPFGAALLMAGVN---DKPELYETDPSGAYFAWKAVAIGSGRNTAMAIFEDKYRDDMTLDEAIKLAIFALAKTMEKPSAENIEVAVITVKDKKFRKLSKEEIE 231          
BLAST of CK939467 vs. ExPASy Swiss-Prot
Match: PSMA_PYRFU (Proteasome subunit alpha OS=Pyrococcus furiosus GN=psmA PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.390e-49
Identity = 110/227 (48.46%), Postives = 150/227 (66.08%), Query Frame = 2
Query:  119 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVES-GGKNIEVAVMT-REKGLKQLDEAEID 790
            A YDRAITVFSPDG LFQV YA EAV++G  AVGV+  + +VL VEK+ T +L +  S  KI  +D+HIA A +G+ ADARVL+NRAR+E Q +RLT  +P  V  I + I  L+Q +TQ GGVRPFG + L+ G +     P LY+TDPSG + AWKA A G   N+     E+ Y++    ++ IKLA+ AL + +E+    NIEVAV+T ++K  ++L   EI+
Sbjct:    8 AGYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCGEGVVLAVEKRITSRLIEPDSYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIYRLTYGEPAPVSVIVKKICDLKQMHTQYGGVRPFGAALLMAGINDR---PELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYRDDMNLEDAIKLALMALAKTMENPSADNIEVAVITVKDKKFRKLTRDEIE 231          
BLAST of CK939467 vs. ExPASy Swiss-Prot
Match: PSA73_DROVI (Proteasome subunit alpha type-7-1B OS=Drosophila virilis GN=Pros28.1B PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.390e-49
Identity = 108/214 (50.47%), Postives = 143/214 (66.82%), Query Frame = 2
Query:  116 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETS----GQETIKLAIRALLEVVESGGKNIEVAVM 745
            M+R+D ++ ++S DGHL QVEYA EAVRKG+  VG+R  + +VLGVEK++   LQ  R+ RKI  +D H+A+  AGL ADARVL++RA++E QSHRL  + P +VEYITRY+A L+Q YTQS   RPFG+S LI GFD   G P L+QTDPSG +  W AN TGR   ++ E+LEKN    S        +K  +RAL         +IE+AV+
Sbjct:    1 MSRFDESVNIYS-DGHLLQVEYAQEAVRKGST-VGLRTKECVVLGVEKRAIDSLQIERTSRKIKKIDQHMAMTFAGLTADARVLVSRAQVEAQSHRLNFDRPASVEYITRYLARLKQTYTQSVARRPFGVSCLIGGFDE-DGRPRLFQTDPSGIYYEWSANTTGRLGQTVNEYLEKNTAAISRTPDAASAMKHVVRALFTATSLDPASIELAVL 211          
BLAST of CK939467 vs. ExPASy Swiss-Prot
Match: PSMA_METKA (Proteasome subunit alpha OS=Methanopyrus kandleri GN=psmA PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.371e-49
Identity = 107/227 (47.14%), Postives = 150/227 (66.08%), Query Frame = 2
Query:  125 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEV--VESGGKNIEVAVMTREKGLKQLDEAEIDAM 796
            YDRAITVFSPDG LFQVEYA EAV++G  A+G++  + +VLGV+K+ T KL +  S+ K+  +D HI  A AGL ADARVL+ RARIE Q++R T  +P+ V+ + + I  L+Q YTQ GGVRPFG + LI G D  T    L++TDPSG  +  KA A G       +  E+ Y+E  + QE I+LA+RAL E    E+   N+E+AV+ ++ G ++L+  +I+ M
Sbjct:   10 YDRAITVFSPDGRLFQVEYAREAVKRGTTALGIKVEEGVVLGVDKRVTSKLIEPESIEKVYQIDTHIGAATAGLVADARVLVERARIEAQTYRYTYGEPIDVDVLVKAICDLKQVYTQHGGVRPFGTALLIAGVD--TKGCRLFETDPSGALTEHKATAIGEGRQEALDVFEEEYREDMTLQEAIELAVRALYEASREETTADNLEIAVVDKQ-GFRKLERKKIEEM 233          
BLAST of CK939467 vs. ExPASy Swiss-Prot
Match: PSMA_THESM (Proteasome subunit alpha OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=psmA PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.177e-48
Identity = 108/226 (47.79%), Postives = 152/226 (67.26%), Query Frame = 2
Query:  119 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK-ETSGQETIKLAIRALLEVVES-GGKNIEVAVMT-REKGLKQLDEAEI 787
            A YDRAITVFSPDG LFQV+YA EAV++G  AVGV+  D +VL VEK+ T KL +  S  KI  +D+HIA A +G+ ADARVL++RAR+E Q +RLT  +PV +  + + I  L+Q +TQ GGVRPFG + L+ G +     P L++TDPSG +  WKA A G   N+     E+ Y+ E + +E IKLA+ AL +++E    ++IEVAV++ +EK  K++   E+
Sbjct:    8 AGYDRAITVFSPDGRLFQVQYAREAVKRGATAVGVKCKDGVVLAVEKRVTSKLIEPESYEKIFQIDDHIAAASSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQMHTQYGGVRPFGAALLMAGVNE---KPELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEKYRDEMTLEEAIKLAVLALSKIMEEPSPESIEVAVISVKEKKFKKITPEEV 230          
BLAST of CK939467 vs. ExPASy Swiss-Prot
Match: PSMA_PYRKO (Proteasome subunit alpha OS=Pyrococcus kodakaraensis GN=psmA PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 9.962e-48
Identity = 109/230 (47.39%), Postives = 150/230 (65.22%), Query Frame = 2
Query:  119 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQ-ETIKLAIRALLEVVES-GGKNIEVAVMTR-EKGLKQLDEAEIDAMV 799
            A YDRAITVFSPDG LFQV YA EAV++G  AVGV+  D +VL VEK+ T KL +  S  KI  +D+HIA A +G+ ADARVL++RAR+E Q +RLT  +PV +  + + I  L+Q +TQ GGVRPFG + L+ G +     P L++TDPSG +  WKA A G   N+     E++Y++  G+ + IKLAI AL + +E    + IEVA +T  EK  K+L   E++  +
Sbjct:    8 AGYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKDGVVLAVEKRITSKLIEPSSYEKIFLIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNE---KPELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYRDDIGKDDAIKLAILALAKTLEEPTAEGIEVAYITMDEKRWKKLPREELEKYI 234          
BLAST of CK939467 vs. ExPASy Swiss-Prot
Match: PSMA_THEK1 (Proteasome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=psmA PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.301e-47
Identity = 109/227 (48.02%), Postives = 149/227 (65.64%), Query Frame = 2
Query:  119 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQ-ETIKLAIRALLEVVES-GGKNIEVAVMTR-EKGLKQLDEAEID 790
            A YDRAITVFSPDG LFQV YA EAV++G  AVGV+  D +VL VEK+ T KL +  S  KI  +D+HIA A +G+ ADARVL++RAR+E Q +RLT  +PV +  + + I  L+Q +TQ GGVRPFG + L+ G +     P L++TDPSG +  WKA A G   N+     E++Y++  G+ + IKLAI AL + +E    + IEVA +T  EK  K+L   E++
Sbjct:    8 AGYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKDGVVLAVEKRITSKLIEPSSYEKIFLIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNE---KPELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYRDDIGKDDAIKLAILALAKTLEEPTAEGIEVAYITMDEKRWKKLPREELE 231          
BLAST of CK939467 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAE (Proteasome subunit alpha OS=Pyrobaculum aerophilum GN=psmA PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.699e-47
Identity = 105/231 (45.45%), Postives = 152/231 (65.80%), Query Frame = 2
Query:  116 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK-ETSGQETIKLAIRALLEVVE-SGGKNIEVAVMT-REKGLKQLDEAEIDAMV 799
            MA YDRAIT+FSP+G ++QVEYA EAV++G   VGV+    +VL  EK+    L DS S+ KI  +D H+A + +GL ADAR+LI+ AR    SHR   ++P+ VE++T+ +  L+Q+YTQ GG RPFG++ LI G D +     LYQTDPSG +  + A A G  S ++ EFLEKNYK +    E I+LA++AL   VE +   N+EVA  T  EK ++++ + E+ +++
Sbjct:    6 MAGYDRAITIFSPEGKIYQVEYAGEAVKRGWPTVGVKCKAGVVLTAEKRKISALFDSSSLEKIYLIDEHVAASPSGLLADARILIDYARDVALSHRFIYDEPIDVEFLTKAVCNLKQQYTQFGGARPFGVALLIAGVDRHGA--RLYQTDPSGVYIGYFATAIGAESGTITEFLEKNYKFDMEMGECIELALKALASAVEITDSANVEVAYATIEEKKMRKMSQDEVASLL 234          
BLAST of CK939467 vs. ExPASy Swiss-Prot
Match: PSMA_THEON (Proteasome subunit alpha OS=Thermococcus onnurineus (strain NA1) GN=psmA PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.785e-47
Identity = 107/226 (47.35%), Postives = 148/226 (65.49%), Query Frame = 2
Query:  119 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQE-TIKLAIRALLEVVES-GGKNIEVAVMT-REKGLKQLDEAEI 787
            A YDRAITVFSPDG LFQV YA EAV++G  AVGV+  + +VL VEK+ T KL +  S  KI  +D+HIA A +G+ ADARVL++RAR+E Q +RLT  +PV +  + + I  L+Q +TQ GGVRPFG + L+ G +     P LY+TDPSG +  W+A A G   N+     E +Y +    E  IKLAI AL + +E    ++IEVA +T ++K  K++D+ E+
Sbjct:    8 AGYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKEGVVLAVEKRITSKLIEPSSYEKIFQIDDHIAAAPSGIIADARVLVDRARLEAQVYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVN---DKPELYETDPSGAYFEWRAVAIGSGRNTAMAIFEDHYSDDLDMEGAIKLAILALAKTLEEPSPESIEVAYITMKDKRWKKMDKEEV 230          
BLAST of CK939467 vs. ExPASy Swiss-Prot
Match: PSMA_THEGJ (Proteasome subunit alpha OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=psmA PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.785e-47
Identity = 109/226 (48.23%), Postives = 147/226 (65.04%), Query Frame = 2
Query:  119 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQE-TIKLAIRALLEVVES-GGKNIEVAVMT-REKGLKQLDEAEI 787
            A YDRAITVFSPDG LFQV YA EAV++G  AVGV+    +VL VEK+ T +L +  S  KI  +D+HIA A +G+ ADARVL++RAR+E Q +RLT  +PV +  + + I  L+Q +TQ GGVRPFG + L+ G +     P LY+TDPSG +  WKA A G   N+     E++Y +    E  IKLAI AL + +E    ++IEVA +T  EK  K+LD+ E+
Sbjct:    8 AGYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKGGVVLAVEKRITSRLIEPSSYEKIFQIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNE---KPELYETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYSDDIDMEGAIKLAILALAKTLEEPSPESIEVAYITLDEKRWKKLDKEEV 230          
The following BLAST results are available for this feature:
BLAST of CK939467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
PSMA_PYRAB1.257e-5049.78Proteasome subunit alpha OS=Pyrococcus abyssi GN=p... [more]
PSMA_PYRFU1.390e-4948.46Proteasome subunit alpha OS=Pyrococcus furiosus GN... [more]
PSA73_DROVI1.390e-4950.47Proteasome subunit alpha type-7-1B OS=Drosophila v... [more]
PSMA_METKA2.371e-4947.14Proteasome subunit alpha OS=Methanopyrus kandleri ... [more]
PSMA_THESM1.177e-4847.79Proteasome subunit alpha OS=Thermococcus sibiricus... [more]
PSMA_PYRKO9.962e-4847.39Proteasome subunit alpha OS=Pyrococcus kodakaraens... [more]
PSMA_THEK11.301e-4748.02Proteasome subunit alpha OS=Thermococcus sp. (stra... [more]
PSMA_PYRAE1.699e-4745.45Proteasome subunit alpha OS=Pyrobaculum aerophilum... [more]
PSMA_THEON3.785e-4747.35Proteasome subunit alpha OS=Thermococcus onnurineu... [more]
PSMA_THEGJ3.785e-4748.23Proteasome subunit alpha OS=Thermococcus gammatole... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004750_C07 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIF_C07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939467 ID=CK939467; Name=CK939467; organism=Citrus sinensis; type=EST; length=899bp
CTGGGCGGGGANNNTCAAAATAAGAAATANNNNNNAAGCTGGAAAGAAGA
AAAAGAAACTCGAATCAGAGAGACGCAGAAATCGATCGAGAAGAGGAAAA
TTAGAGAGATTTGACATGGCGAGATACGATCGAGCAATCACTGTATTTTC
ACCGGATGGCCACCTGTTCCAAGTGGAATACGCACTAGAGGCCGTACGCA
AAGGCAACGCCGCCGTCGGCGTGCGCGGCACCGACACCATCGTTCTTGGC
GTCGAAAAGAAATCCACTGTCAAGCTTCAGGACTCCAGATCAGTGAGGAA
GATTGTCAGCTTGGATAATCATATTGCATTGGCCTGTGCTGGACTTAAAG
CAGATGCTCGTGTACTGATAAACAGGGCTCGAATAGAATGTCAGAGCCAC
AGGCTGACTGTTGAGGACCCAGTAACTGTTGAGTACATCACTCGTTACAT
TGCAGGTCTCCAGCAGAAGTACACACAAAGCGGTGGTGTGAGACCATTTG
GTCTTTCTACTCTGATTGTGGGCTTTGATCCATACACTGGCGTGCCATCA
CTATATCAGACAGATCCTTCTGGGACATTTTCTGCTTGGAAAGCTAATGC
AACTGGGAGAAACTCTAATTCAATGAGGGAGTTTCTGGAGAAAAACTATA
AGGAAACTTCCGGGCAAGAAACTATAAAGCTTGCAATTCGGGCATTACTT
GAGGTTGTTGAGAGTGGGGGCAAAAACATAGAAGTTGCTGTGATGACAAG
GGAGAAGGGTCTGAAGCAGCTTGATGAAGCTGAAATTGATGCCATGGTAG
CCGAGATTGAAGCAAAGAAGGCCGCCGCTGAGGCTGCAAAGAAGGGACCT
CCCAAGGAAACATGAGTTTTTAGTTCTGGCTTCTGTTTTTTCCATTGCC
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