CK939467

Overview
NameCK939467
Unique NameCK939467
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939467 vs. ExPASy Swiss-Prot
Match: PSMA_SULIA (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.27) GN=psmA PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.713e-45
Identity = 94/218 (43.12%), Postives = 142/218 (65.14%), Query Frame = 2
Query:  125 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVESGGK----NIEVAVMTREKGL 763
            YDRAIT+FSPDG L+QV+YA EAV+KG  A+G++    +V+  EK+    L D  S+ K+  +D+H+  + AGL +D RVLI+ AR     HRL  ++PV+++Y+T+ +A ++Q YTQ GGVRPFG++ +I G D    VP LY T+PSG +  ++A A G+   +  EFLEKNYKE  + ++TI LA++AL   ++   K     +E+   + + GL
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGID--KSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEIGYASTQTGL 225          
BLAST of CK939467 vs. ExPASy Swiss-Prot
Match: PSMA_METAC (Proteasome subunit alpha OS=Methanosarcina acetivorans GN=psmA PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.627e-45
Identity = 101/229 (44.10%), Postives = 145/229 (63.32%), Query Frame = 2
Query:  125 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQE-TIKLAIRALLEVVES--GGKNIEVAVMTRE-KGLKQLDEAEIDAMV 799
            YDRAITVFSPDG LFQVEYA EAV++G  AVG++  D +VL V+K+ T +L ++ S+ KI  +D HI  A +GL ADAR L++RAR+E Q +R++ ++P+ VE I++ I   +Q YTQ GGVRP+G + LI G D     P L++TDPSG    +KA A G   N++ E  E +Y+E    +  I L + AL +  E       +EV V++ E K  ++L   E++  V
Sbjct:    7 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDEHIGAATSGLVADARSLVDRARVEAQVNRVSYDEPIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVD--DNKPRLFETDPSGALLEYKATAIGAGRNAVVEVFEADYREDMNMDAAILLGMDALYKAAEGKFDAGTLEVGVVSLEDKKFRKLGPEEVENYV 233          
BLAST of CK939467 vs. ExPASy Swiss-Prot
Match: PSMA_METBF (Proteasome subunit alpha OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=psmA PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 7.893e-45
Identity = 98/229 (42.79%), Postives = 146/229 (63.76%), Query Frame = 2
Query:  125 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQE-TIKLAIRALLEVVES--GGKNIEVAVMT-REKGLKQLDEAEIDAMV 799
            YDRAITVFSPDG LFQVEYA EAV++G  AVG++  D +VL V+K+ T +L ++ S+ KI  +D+HI  A +GL ADAR L++RAR+E Q +R++ ++P+ VE I++ I   +Q YTQ GGVRP+G + LI G D    +P L++TDPSG    +KA A G   N++ E  E  Y++    +  I L + AL    E       +EV +++ ++K  ++L   E++  V
Sbjct:    9 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDEPIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVD--DNLPRLFETDPSGALLEYKATAIGAGRNAVVEVFEAEYRQDMNMDAAILLGMDALYRAAEGKFDASTLEVGIVSLQDKKFRKLVPEEVENYV 235          
BLAST of CK939467 vs. ExPASy Swiss-Prot
Match: PSMA_METMP (Proteasome subunit alpha OS=Methanococcus maripaludis GN=psmA PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.346e-44
Identity = 102/228 (44.74%), Postives = 148/228 (64.91%), Query Frame = 2
Query:  125 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKET-SGQETIKLAIRALLEVVES-GGKNIEVAVMTRE-KGLKQLDEAEIDAMV 799
            YDRAIT+FSP+G L+QVEYA EAVR+G  AVG++  D +VL V+++ T KL D  S+ KI  +D+HI  A +GL ADARVLI+RARIE Q +R++  + +TVE + + I  ++Q YTQ GG RPFGL+ LI G D ++    L++TDPSG    +KA A G       E LE  Y E  +  E ++LA+ AL +  E    +NI++A++    K ++++   EI+ +V
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARIEAQMNRVSYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSA--RLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMTVSEGMELALYALSKTTEELKPENIDMAIIKDSGKLVEKISVDEIEKIV 235          
BLAST of CK939467 vs. ExPASy Swiss-Prot
Match: PSMA_METVS (Proteasome subunit alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=psmA PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.758e-44
Identity = 98/209 (46.89%), Postives = 138/209 (66.03%), Query Frame = 2
Query:  125 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKET-SGQETIKLAIRALLEVVES-GGKNIEVAVM 745
            YDRAIT+FSP+G L+QVEYA EAVR+G  AVG++  D +VL V+++ T KL D  S+ KI  +D+HI  A +GL ADARVLI+RAR+E Q +R++  + +TVE + + I  ++Q YT  GG RPFGL+ LI G D ++    L++TDPSG    +KA A G       E LE+ Y E  S  E ++LAI AL +  E    +NI++A++
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARVEAQVNRISYGEAITVEALAKKICDIKQAYTHHGGARPFGLALLITGIDRHSA--RLFETDPSGALIEYKATAIGSGRPVAMEILEEKYDENMSVSEGMELAIYALSKTTEELKPENIDMAIV 216          
BLAST of CK939467 vs. ExPASy Swiss-Prot
Match: PSMA_METTE (Proteasome subunit alpha OS=Methanosarcina thermophila GN=psmA PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.758e-44
Identity = 100/225 (44.44%), Postives = 145/225 (64.44%), Query Frame = 2
Query:  125 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQE-TIKLAIRALLEVVES--GGKNIEVAVMT-REKGLKQLDEAEI 787
            YDRAITVFSPDG LFQVEYA EAV++G  AVG++  D +VL V+K+ T +L ++ S+ KI  +D+HI  A +GL ADAR L++RAR+E Q +R++ ++ + VE I++ I   +Q YTQ GGVRP+G + LI G D     P L++TDPSG    +KA A G   N++ E  E +YKE    E  I L + AL +  E       +EV V++ ++K  ++L+  E+
Sbjct:    7 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVADARALVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDKR--PRLFETDPSGALLEYKATAIGAGRNAVVEVFEADYKEDMNIEAAILLGMDALYKAAEGKFDAGTLEVGVVSLQDKKFRKLEPEEV 229          
BLAST of CK939467 vs. ExPASy Swiss-Prot
Match: PSMA_METM7 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=psmA PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.758e-44
Identity = 101/228 (44.30%), Postives = 148/228 (64.91%), Query Frame = 2
Query:  125 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKET-SGQETIKLAIRALLEVVES-GGKNIEVAVMTRE-KGLKQLDEAEIDAMV 799
            YDRAIT+FSP+G L+QVEYA EAVR+G  AVG++  D +VL V+++ T KL D  S+ KI  +D+HI  A +GL ADARVLI+RAR+E Q +R++  + +TVE + + I  ++Q YTQ GG RPFGL+ LI G D ++    L++TDPSG    +KA A G       E LE  Y E  +  E ++LA+ AL +  E    +NI++A++    K ++++   EI+ +V
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSA--RLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMTVNEGMELALYALSKTTEELKPENIDMAIVKDSGKLVEKISVDEIEKIV 235          
BLAST of CK939467 vs. ExPASy Swiss-Prot
Match: PSMA_METM5 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=psmA PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.758e-44
Identity = 101/228 (44.30%), Postives = 148/228 (64.91%), Query Frame = 2
Query:  125 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVES-GGKNIEVAVMTRE-KGLKQLDEAEIDAMV 799
            YDRAIT+FSP+G L+QVEYA EAVR+G  AVG++  D +VL V+++ T KL D  S+ KI  +D+HI  A +GL ADARVLI+RAR+E Q +R++  + +TVE + + I  ++Q YTQ GG RPFGL+ LI G D ++    L++TDPSG    +KA A G       E LE  Y E  +  E ++LA+ AL +  E    +NI++A++    K ++++   EI+ +V
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSA--RLFETDPSGALIEYKATAIGSGRPIAMEVLESKYSEDMTVNEGMELALYALSKTTEELKPENIDMAIVKDSGKLVEKISVDEIEKIV 235          
BLAST of CK939467 vs. ExPASy Swiss-Prot
Match: PSMA_METM6 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=psmA PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.297e-44
Identity = 101/228 (44.30%), Postives = 147/228 (64.47%), Query Frame = 2
Query:  125 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETS-GQETIKLAIRALLEVVES-GGKNIEVAVMTRE-KGLKQLDEAEIDAMV 799
            YDRAIT+FSP+G L+QVEYA EAVR+G  AVG++  D +VL V+++ T KL D  S+ KI  +D+HI  A +GL ADARVLI+RAR+E Q +R++  + +TVE + + I  ++Q YTQ GG RPFGL+ LI G D ++    L++TDPSG    +KA A G       E LE  Y E     E ++LA+ AL +  E    +NI++A++    K ++++   EI+ +V
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCNDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSA--RLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMIVSEGMELALYALSKTTEELKPENIDMAIVKDSGKLVEKISVDEIEKIV 235          
BLAST of CK939467 vs. ExPASy Swiss-Prot
Match: PSMA_SULAC (Proteasome subunit alpha OS=Sulfolobus acidocaldarius GN=psmA PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.140e-43
Identity = 91/201 (45.27%), Postives = 131/201 (65.17%), Query Frame = 2
Query:  125 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVESGGK 724
            YDRAIT+FSPDG L+QV+YA EAV++G   +GV+    +VL  EK+   +L D   + KI  LD+H+    AGL +D R+LI+ AR +   HRL  ++P+++EY+T+ I+ ++Q YTQ GGVRPFG++ ++ G D     P L  T+PSG F  + A A G+   +  E+LEKNYKE    Q TI LA+RAL+  ++ G K
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKRGWTTLGVKTKSGVVLLAEKRKATQLLDVDGIEKIFMLDDHVGCTFAGLASDGRILIDYARSQALQHRLIYDEPISIEYLTKVISDVKQAYTQHGGVRPFGVALIVGGIDK-GKQPKLLMTEPSGQFMPYYAVAIGQGGYTATEYLEKNYKEDLDIQSTILLALRALMATLKPGEK 209          
The following BLAST results are available for this feature:
BLAST of CK939467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
PSMA_SULIA2.713e-4543.12Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_METAC4.627e-4544.10Proteasome subunit alpha OS=Methanosarcina acetivo... [more]
PSMA_METBF7.893e-4542.79Proteasome subunit alpha OS=Methanosarcina barkeri... [more]
PSMA_METMP1.346e-4444.74Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METVS1.758e-4446.89Proteasome subunit alpha OS=Methanococcus vannieli... [more]
PSMA_METTE1.758e-4444.44Proteasome subunit alpha OS=Methanosarcina thermop... [more]
PSMA_METM71.758e-4444.30Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METM51.758e-4444.30Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METM62.297e-4444.30Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_SULAC1.140e-4345.27Proteasome subunit alpha OS=Sulfolobus acidocaldar... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004750_C07 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIF_C07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939467 ID=CK939467; Name=CK939467; organism=Citrus sinensis; type=EST; length=899bp
CTGGGCGGGGANNNTCAAAATAAGAAATANNNNNNAAGCTGGAAAGAAGA
AAAAGAAACTCGAATCAGAGAGACGCAGAAATCGATCGAGAAGAGGAAAA
TTAGAGAGATTTGACATGGCGAGATACGATCGAGCAATCACTGTATTTTC
ACCGGATGGCCACCTGTTCCAAGTGGAATACGCACTAGAGGCCGTACGCA
AAGGCAACGCCGCCGTCGGCGTGCGCGGCACCGACACCATCGTTCTTGGC
GTCGAAAAGAAATCCACTGTCAAGCTTCAGGACTCCAGATCAGTGAGGAA
GATTGTCAGCTTGGATAATCATATTGCATTGGCCTGTGCTGGACTTAAAG
CAGATGCTCGTGTACTGATAAACAGGGCTCGAATAGAATGTCAGAGCCAC
AGGCTGACTGTTGAGGACCCAGTAACTGTTGAGTACATCACTCGTTACAT
TGCAGGTCTCCAGCAGAAGTACACACAAAGCGGTGGTGTGAGACCATTTG
GTCTTTCTACTCTGATTGTGGGCTTTGATCCATACACTGGCGTGCCATCA
CTATATCAGACAGATCCTTCTGGGACATTTTCTGCTTGGAAAGCTAATGC
AACTGGGAGAAACTCTAATTCAATGAGGGAGTTTCTGGAGAAAAACTATA
AGGAAACTTCCGGGCAAGAAACTATAAAGCTTGCAATTCGGGCATTACTT
GAGGTTGTTGAGAGTGGGGGCAAAAACATAGAAGTTGCTGTGATGACAAG
GGAGAAGGGTCTGAAGCAGCTTGATGAAGCTGAAATTGATGCCATGGTAG
CCGAGATTGAAGCAAAGAAGGCCGCCGCTGAGGCTGCAAAGAAGGGACCT
CCCAAGGAAACATGAGTTTTTAGTTCTGGCTTCTGTTTTTTCCATTGCC
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