CK939467

Overview
NameCK939467
Unique NameCK939467
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939467 vs. ExPASy Swiss-Prot
Match: PSMA_METMA (Proteasome subunit alpha OS=Methanosarcina mazei GN=psmA PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.140e-43
Identity = 100/229 (43.67%), Postives = 144/229 (62.88%), Query Frame = 2
Query:  125 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVES--GGKNIEVAVMTRE-KGLKQLDEAEIDAMV 799
            YDRAITVFSPDG LFQVEYA EAV++G  AVG++  D +VL V+K+ T +L ++ S+ KI  +D+HI  A +GL ADAR L++RAR+E Q +R++ ++ + VE I++ I   +Q YTQ GGVRP+G + LI G D     P L++TDPSG    +KA A G   N++ E  E +Y+E       I L + AL +  E       +EV V++ E K  ++L   E++  V
Sbjct:    9 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVD--DNKPRLFETDPSGALLEYKATAIGAGRNAVVEVFEADYREDMNIDAAILLGMDALYKAAEGKFDAGTLEVGVVSLEDKKFRKLGPEEVENYV 235          
BLAST of CK939467 vs. ExPASy Swiss-Prot
Match: PSMA_SULTO (Proteasome subunit alpha OS=Sulfolobus tokodaii GN=psmA PE=3 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 1.944e-43
Identity = 94/218 (43.12%), Postives = 138/218 (63.30%), Query Frame = 2
Query:  125 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVESGGK----NIEVAVMTREKGL 763
            YDRAIT+FSPDG L+QV+YA EAV+KG   +GV+    +VL  EK+   +L D  S+ K+  LD+H+  + AGL +D R+LI+ AR +   HRL  ++P+ ++Y+T+ ++ ++Q YTQ GGVRPFG++ +I G D     P L  T+PSG F  + A A G+   +  E+ EKNY+E  + Q+TI L IRAL   ++ G K    NIEV     + G+
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTTLGVKTKAGVVLIGEKRKATQLLDVDSIEKVFILDDHVGCSFAGLASDGRILIDYARSQALQHRLIYDEPINIDYLTKLVSDVKQMYTQHGGVRPFGVALIIGGID-RGKTPKLLMTEPSGQFMPYYAVAIGQGGYTATEYFEKNYREDLNMQDTILLGIRALASTLKPGEKLAPSNIEVGFADVDSGM 226          
BLAST of CK939467 vs. ExPASy Swiss-Prot
Match: PSMA_NATPD (Proteasome subunit alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=psmA PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.944e-43
Identity = 98/228 (42.98%), Postives = 142/228 (62.28%), Query Frame = 2
Query:  125 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQET-IKLAIRALLEVVESG----GKNIEVAVMTREKGLKQLDEAEIDA 793
            YDR IT+FSPDG L+QVEYA EAV++G A++G+R  D +VL V+K+    L +  SV KI   D+HI +A AG  ADAR LI+ AR + Q ++L  ++P+ VE +T+ +    Q+YTQ GG RPFG++ +I G +   G P LY+TDPSGT   W+A A G +   ++E+LE++Y E+   E  I LA+ AL  V +      G  +    +  + G  QL + EI+A
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGIRTEDGVVLVVDKRIRSPLMERTSVEKIHKADDHIGIASAGHVADARQLIDFARRQAQVNQLRYDEPIGVETLTKAVTDHIQQYTQVGGARPFGVALIIGGIE--DGEPRLYETDPSGTPYEWQALAVGADRGDIQEYLEEHYSESLDTEAGIGLALEALASVNDDSLTPEGIGLATVTVDDDDGFSQLSDEEIEA 235          
BLAST of CK939467 vs. ExPASy Swiss-Prot
Match: PSMA_METTH (Proteasome subunit alpha OS=Methanobacterium thermoautotrophicum GN=psmA PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 5.657e-43
Identity = 100/227 (44.05%), Postives = 145/227 (63.88%), Query Frame = 2
Query:  119 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSG-QETIKLAIRALLEVVE--SGGKNIEVAVM-TREKGLKQLDEAEI 787
            A YDRAITVFSPDG LFQVEYA EAV++G  ++GV+  + IVL V+K+ T KL + +S+ KI  +D HI  A +GL ADAR +I +AR+E Q +R+T  +P+ VE + + I  ++Q YTQ GGVRPFG + LI+G     G   L++TDPSG    +KA A G    +  E  EK Y +     + I+LA+ A+ E  E  +  +++E+AV+   +K  ++L + EI
Sbjct:    7 AGYDRAITVFSPDGRLFQVEYAREAVKRGTTSLGVKSKEGIVLVVDKRPTSKLVEPKSIEKIFQIDEHIGAATSGLVADARAIIEKARLEAQINRITYNEPIRVESLAKKICDMKQMYTQHGGVRPFG-TALIIGGVNGRGC-RLFETDPSGALIEYKATAIGAGRPAAMEEFEKKYSDDMNLNQAIELALDAVYEATEGKTTPESVEIAVIEAADKKYRRLPDDEI 231          
BLAST of CK939467 vs. ExPASy Swiss-Prot
Match: PSMA_HALWD (Proteasome subunit alpha OS=Haloquadratum walsbyi (strain DSM 16790) GN=psmA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.807e-42
Identity = 103/231 (44.59%), Postives = 142/231 (61.47%), Query Frame = 2
Query:  125 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNY-KETSGQETIKLAIRALL-----EVVESGGKNIEVAVMTREKGLKQLDEAEIDAMV 799
            YDR IT+FSPDG L+QVEYA EAV++G A+VG+R  D IVL  +K+S   L +  SV KI   D+H+ +A AG  ADAR LI+ AR + Q +RL   +PV +E +T+ +    Q+YTQ GG RPFG++ LI G +   G P LY+TDPSGT   WKA + G + + ++E LE+NY +E S  E + LA+R +      E+  +G     VA  T E    +L   EI A +
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASVGIRTPDGIVLAADKRSRSPLMEPTSVEKIHKTDDHVGIASAGHVADARQLIDFARRQAQVNRLRYGEPVGIETLTKNVTDNIQQYTQVGGARPFGVALLIGGIE--DGSPRLYETDPSGTPYEWKAVSIGADRSDLQEHLEENYTEELSLDEGVGLALRTIAISNDDELTAAGVDVATVASDTEE--FIELTNDEISAYI 236          
BLAST of CK939467 vs. ExPASy Swiss-Prot
Match: PSA4B_ORYSJ (Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. japonica GN=Os06g0167600 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.807e-42
Identity = 86/200 (43.00%), Postives = 133/200 (66.50%), Query Frame = 2
Query:  122 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKL-QDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVES 715
            RYD   T+FSP+G L+QVEYA+EA+    +A+GV   D +VL  EKK T KL Q SRS  K+  +D+H+A A AG+ +DA +L+N AR+  Q + L+ ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D + G   LY +DPSG +S WKA A G NS + +  L+++Y++  + +E + LA++ L + ++S
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGLTREEAVALALKVLSKTMDS 202          
BLAST of CK939467 vs. ExPASy Swiss-Prot
Match: PSA4B_ORYSI (Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. indica GN=OsI_021067 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.807e-42
Identity = 86/200 (43.00%), Postives = 133/200 (66.50%), Query Frame = 2
Query:  122 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKL-QDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVES 715
            RYD   T+FSP+G L+QVEYA+EA+    +A+GV   D +VL  EKK T KL Q SRS  K+  +D+H+A A AG+ +DA +L+N AR+  Q + L+ ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D + G   LY +DPSG +S WKA A G NS + +  L+++Y++  + +E + LA++ L + ++S
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGLTREEAVALALKVLSKTMDS 202          
BLAST of CK939467 vs. ExPASy Swiss-Prot
Match: PSA4A_ORYSJ (Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. japonica GN=PAC1 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.807e-42
Identity = 86/200 (43.00%), Postives = 133/200 (66.50%), Query Frame = 2
Query:  122 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKL-QDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVES 715
            RYD   T+FSP+G L+QVEYA+EA+    +A+GV   D +VL  EKK T KL Q SRS  K+  +D+H+A A AG+ +DA +L+N AR+  Q + L+ ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D + G   LY +DPSG +S WKA A G NS + +  L+++Y++  + +E + LA++ L + ++S
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGMTREEAVALALKVLSKTMDS 202          
BLAST of CK939467 vs. ExPASy Swiss-Prot
Match: PSA4A_ORYSI (Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. indica GN=OsI_021120 PE=1 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 2.807e-42
Identity = 86/200 (43.00%), Postives = 133/200 (66.50%), Query Frame = 2
Query:  122 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKL-QDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGQETIKLAIRALLEVVES 715
            RYD   T+FSP+G L+QVEYA+EA+    +A+GV   D +VL  EKK T KL Q SRS  K+  +D+H+A A AG+ +DA +L+N AR+  Q + L+ ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D + G   LY +DPSG +S WKA A G NS + +  L+++Y++  + +E + LA++ L + ++S
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGMTREEAVALALKVLSKTMDS 202          
BLAST of CK939467 vs. ExPASy Swiss-Prot
Match: PSMA2_HALMA (Proteasome subunit alpha 2 OS=Haloarcula marismortui GN=psmA2 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.666e-42
Identity = 96/223 (43.05%), Postives = 140/223 (62.78%), Query Frame = 2
Query:  125 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQE-TIKLAIRALLEVVESGGKNIEVAVMTREKGLKQLDEAEID 790
            YDR IT+FSPDG L+QVEYA EAV++G A+VGVR  D +V+  ++ +   L +  S+ KI  +D+H+ +A AG  ADAR LI+ AR + Q +RL  ++P +VE +T+ I    Q+YTQ+GG RPFG++ L+ G +   G P L++TDPSGT   W+A A G +   ++ FLE+ Y E    E  I+LA+RAL  V E G     V + T +   +Q ++   D
Sbjct:    9 YDRGITIFSPDGRLYQVEYAREAVKRGTASVGVRTEDGVVIAADRHARSPLIERDSIEKIHEIDSHVGVASAGHVADARQLIDVARRQSQVNRLRYDEPASVESLTKEITDYIQQYTQTGGARPFGVALLVAGIE--DGEPRLFETDPSGTPYEWQAVAIGGSREDIQTFLEEEYAEGMDLEGGIELALRALASVNEDGLDATGVDIATIDVESEQFEKLAED 229          
The following BLAST results are available for this feature:
BLAST of CK939467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
PSMA_METMA1.140e-4343.67Proteasome subunit alpha OS=Methanosarcina mazei G... [more]
PSMA_SULTO1.944e-4343.12Proteasome subunit alpha OS=Sulfolobus tokodaii GN... [more]
PSMA_NATPD1.944e-4342.98Proteasome subunit alpha OS=Natronomonas pharaonis... [more]
PSMA_METTH5.657e-4344.05Proteasome subunit alpha OS=Methanobacterium therm... [more]
PSMA_HALWD2.807e-4244.59Proteasome subunit alpha OS=Haloquadratum walsbyi ... [more]
PSA4B_ORYSJ2.807e-4243.00Proteasome subunit alpha type-4-2 OS=Oryza sativa ... [more]
PSA4B_ORYSI2.807e-4243.00Proteasome subunit alpha type-4-2 OS=Oryza sativa ... [more]
PSA4A_ORYSJ2.807e-4243.00Proteasome subunit alpha type-4-1 OS=Oryza sativa ... [more]
PSA4A_ORYSI2.807e-4243.00Proteasome subunit alpha type-4-1 OS=Oryza sativa ... [more]
PSMA2_HALMA3.666e-4243.05Proteasome subunit alpha 2 OS=Haloarcula marismort... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004750_C07 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIF_C07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939467 ID=CK939467; Name=CK939467; organism=Citrus sinensis; type=EST; length=899bp
CTGGGCGGGGANNNTCAAAATAAGAAATANNNNNNAAGCTGGAAAGAAGA
AAAAGAAACTCGAATCAGAGAGACGCAGAAATCGATCGAGAAGAGGAAAA
TTAGAGAGATTTGACATGGCGAGATACGATCGAGCAATCACTGTATTTTC
ACCGGATGGCCACCTGTTCCAAGTGGAATACGCACTAGAGGCCGTACGCA
AAGGCAACGCCGCCGTCGGCGTGCGCGGCACCGACACCATCGTTCTTGGC
GTCGAAAAGAAATCCACTGTCAAGCTTCAGGACTCCAGATCAGTGAGGAA
GATTGTCAGCTTGGATAATCATATTGCATTGGCCTGTGCTGGACTTAAAG
CAGATGCTCGTGTACTGATAAACAGGGCTCGAATAGAATGTCAGAGCCAC
AGGCTGACTGTTGAGGACCCAGTAACTGTTGAGTACATCACTCGTTACAT
TGCAGGTCTCCAGCAGAAGTACACACAAAGCGGTGGTGTGAGACCATTTG
GTCTTTCTACTCTGATTGTGGGCTTTGATCCATACACTGGCGTGCCATCA
CTATATCAGACAGATCCTTCTGGGACATTTTCTGCTTGGAAAGCTAATGC
AACTGGGAGAAACTCTAATTCAATGAGGGAGTTTCTGGAGAAAAACTATA
AGGAAACTTCCGGGCAAGAAACTATAAAGCTTGCAATTCGGGCATTACTT
GAGGTTGTTGAGAGTGGGGGCAAAAACATAGAAGTTGCTGTGATGACAAG
GGAGAAGGGTCTGAAGCAGCTTGATGAAGCTGAAATTGATGCCATGGTAG
CCGAGATTGAAGCAAAGAAGGCCGCCGCTGAGGCTGCAAAGAAGGGACCT
CCCAAGGAAACATGAGTTTTTAGTTCTGGCTTCTGTTTTTTCCATTGCC
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