CK939465

Overview
NameCK939465
Unique NameCK939465
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939465 vs. ExPASy Swiss-Prot
Match: ODO2_STAAN (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain N315) GN=odhB PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.056e-14
Identity = 40/76 (52.63%), Postives = 55/76 (72.37%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIQKLIAKEGETVEPGAKIAVISKSGEG 639
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S +AGV+ + +A EG+TVE G  IA+I   GEG
Sbjct:    6 VPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEAGVLSEQLASEGDTVEVGQAIAII---GEG 78          
BLAST of CK939465 vs. ExPASy Swiss-Prot
Match: ODO2_STAAM (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=odhB PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.056e-14
Identity = 40/76 (52.63%), Postives = 55/76 (72.37%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIQKLIAKEGETVEPGAKIAVISKSGEG 639
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S +AGV+ + +A EG+TVE G  IA+I   GEG
Sbjct:    6 VPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEAGVLSEQLASEGDTVEVGQAIAII---GEG 78          
BLAST of CK939465 vs. ExPASy Swiss-Prot
Match: ODO2_STAAC (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain COL) GN=odhB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.056e-14
Identity = 40/76 (52.63%), Postives = 55/76 (72.37%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIQKLIAKEGETVEPGAKIAVISKSGEG 639
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S +AGV+ + +A EG+TVE G  IA+I   GEG
Sbjct:    6 VPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEAGVLSEQLASEGDTVEVGQAIAII---GEG 78          
BLAST of CK939465 vs. ExPASy Swiss-Prot
Match: ODO2_STAA8 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain NCTC 8325) GN=odhB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.056e-14
Identity = 40/76 (52.63%), Postives = 55/76 (72.37%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIQKLIAKEGETVEPGAKIAVISKSGEG 639
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S +AGV+ + +A EG+TVE G  IA+I   GEG
Sbjct:    6 VPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEAGVLSEQLASEGDTVEVGQAIAII---GEG 78          
BLAST of CK939465 vs. ExPASy Swiss-Prot
Match: ODO2_STAA3 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain USA300) GN=odhB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.056e-14
Identity = 40/76 (52.63%), Postives = 55/76 (72.37%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIQKLIAKEGETVEPGAKIAVISKSGEG 639
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S +AGV+ + +A EG+TVE G  IA+I   GEG
Sbjct:    6 VPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEAGVLSEQLASEGDTVEVGQAIAII---GEG 78          
BLAST of CK939465 vs. ExPASy Swiss-Prot
Match: ODO2_BARQU (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Bartonella quintana GN=sucB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.052e-13
Identity = 33/77 (42.86%), Postives = 53/77 (68.83%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIQKLIAKEGETVEPGAKIAVISKSGEGV 642
            VP +GES+T+ T+ K+ K+ G+ V +DEP+ ++ETDKVT++V SP  G + ++IAKEG+ VE  A +  +     G+
Sbjct:    7 VPTLGESVTEATIGKWFKKLGEAVAVDEPLVELETDKVTVEVPSPVMGKLTEIIAKEGDIVEVNAVLGFVESGAAGI 83          
BLAST of CK939465 vs. ExPASy Swiss-Prot
Match: ODO2_STAHJ (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus haemolyticus (strain JCSC1435) GN=odhB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.061e-13
Identity = 39/76 (51.32%), Postives = 54/76 (71.05%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIQKLIAKEGETVEPGAKIAVISKSGEG 639
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S + GV+Q+ +A EG+TVE G  IA +   GEG
Sbjct:    6 VPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEEGVLQEQLASEGDTVEVGQVIATV---GEG 78          
BLAST of CK939465 vs. ExPASy Swiss-Prot
Match: ODO2_DICDI (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Dictyostelium discoideum GN=odhB PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.061e-13
Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = 1
Query:  376 FSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIQKLIAKEGETVEPGAKIAVISK 627
            F S + D+V   VP MG+SI++GT+  + K  GD V +DE +  IETDKVTID+ +P +G I +L AKEGE V  G  +  I+K
Sbjct:   67 FYSSANDVV-IKVPSMGDSISEGTIVAWTKNVGDSVRVDEVVCSIETDKVTIDINAPVSGTIVELFAKEGENVTVGNDLYKIAK 149          
BLAST of CK939465 vs. ExPASy Swiss-Prot
Match: ODO2_SCHPO (Probable dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Schizosaccharomyces pombe GN=SPBC776.15c PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.163e-12
Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = 1
Query:  415 PFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIQKLIAKEGETVEPGAKIAVISKS 630
            P   ESIT+GTLA++LKQPG+ V  DE IA +ETDK+   V +P AGV+++ + KEG+T+     IAVI  S
Sbjct:   48 PPFPESITEGTLAQWLKQPGEYVNKDEEIASVETDKIDAPVTAPDAGVLKEQLVKEGDTITIDQDIAVIDTS 119          
BLAST of CK939465 vs. ExPASy Swiss-Prot
Match: ODO2_BACSU (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Bacillus subtilis GN=odhB PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.774e-12
Identity = 32/77 (41.56%), Postives = 56/77 (72.73%), Query Frame = 1
Query:  397 LVDAVVPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIQKLIAKEGETVEPGAKIAVISK 627
            + +  VP + ESI++GT+A++LKQPGD VE  E + ++ETDKV +++ + ++GV+Q+++   G+TV+ G  I  IS+
Sbjct:    1 MAEIKVPELAESISEGTIAQWLKQPGDYVEQGEYLLELETDKVNVELTAEESGVLQEVLKDSGDTVQVGEIIGTISE 77          
The following BLAST results are available for this feature:
BLAST of CK939465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
ODO2_STAAN8.056e-1452.63Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAAM8.056e-1452.63Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAAC8.056e-1452.63Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAA88.056e-1452.63Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAA38.056e-1452.63Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_BARQU1.052e-1342.86Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAHJ3.061e-1351.32Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_DICDI3.061e-1347.62Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_SCHPO1.163e-1251.39Probable dihydrolipoyllysine-residue succinyltrans... [more]
ODO2_BACSU5.774e-1241.56Dihydrolipoyllysine-residue succinyltransferase co... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004750_C04 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIF_C04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939465 ID=CK939465; Name=CK939465; organism=Citrus sinensis; type=EST; length=813bp
GGGGACGAGAAAGTTCTGTACATCGCAAGTCGTCTCTCTCTCTGAGTCTT
GTAAAATTTGATCTCAGATTCATTTTTATTCATTCACATCTAAAAAGAAA
AATAAATAAAGCACATAGTTTTTTCGGAAATGATTTGGGGAATTGTTCGC
CGCAAAATCACTTCGGCTCAAGTGATTGGACAATCAGTGTCAAAGATTGG
GCCAAGATGTCACGCGACTGCGCAAAAGGAGGCTATACTCACTTGCAGAG
GTTTTCAGCGTGTTCAGCGTTCTAGCTATCACATTTTGTCAGGGAATTAT
GTTTGTTCGACGCCAAGAAGCGAAGTAATTGAGCTGATACAGAAAGGATC
TTTTATTGGATCGAGAAGTAGATTGTTTTCTTCAGATAGTGGAGACCTGG
TTGATGCTGTTGTTCCCTTCATGGGTGAATCCATTACTGATGGAACATTG
GCGAAGTTTTTGAAGCAACCCGGAGATAGAGTTGAAATTGATGAGCCCAT
TGCTCAAATTGAAACCGATAAGGTGACAATTGATGTGGCTAGTCCTCAAG
CCGGTGTTATCCAAAAGCTTATAGCCAAGGAAGGTGAAACTGTGGAACCA
GGTGCAAAGATTGCTGTTATTTCAAAATCAGGTGAAGGTGTTGCTCAAGC
TGCTCCAGCAGAGAAAGCTGCTGCTCAGCCTCCACCTGCTGAAGAAAAGC
CAAGTGTTGAGAAGCAAACTCCTGAGTCGGAAGCTGCCCCTGCTGTAAAA
GATAAAACACCCTCTGAACCACCTCCTACAGCCAAAAAACCTACTTCACC
TTCAAAACCCATG
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