CK939456

Overview
NameCK939456
Unique NameCK939456
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939456 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.987e-41
Identity = 81/202 (40.10%), Postives = 115/202 (56.93%), Query Frame = 1
Query:  259 FENFFSKRNTPVAHAVGFWDYRSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQG 864
            F+     RN     A GF+ Y +FI A   Y    FG TG    + +EI AFL     +T+ G+  A  GP AWG C+  E +PS +YC  + ++  PC PG +YYGRG I I WNYNYG  G A+  DLLN P+ +  ++ ++F++A+W WMT  +  +PS+HD     W P+  D  ++R P +GT  NI+ G   CG+G
Sbjct:   84 FDQVLKHRNDGACPAKGFYTYDAFIAAAKAYP--SFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPS-AYCSATPQF--PCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMT-AQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRG 279          
BLAST of CK939456 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.160e-40
Identity = 83/211 (39.34%), Postives = 114/211 (54.03%), Query Frame = 1
Query:  232 ISDYFQVYQFENFFSKRNTPVAHAVGFWDYRSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQG 864
            IS+      F+     RN        F+ Y +FITA   ++  GFGTTG    + +E+ AF A    +T+ G+  A  G  AWG CY  E     SYC  S ++  PC PG +YYGRG I I +NYNYG  G A+  +LLN+P+ +  NA ++F++AIW WMT  +  +PS HD   G W P+  D  + R P +G   NI+ G   CG G
Sbjct:   85 ISNIISSSMFDQMLKHRNDNTCQGKSFYTYNAFITAARSFR--GFGTTGDTTRRKREVAAFFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPSYCVQSSQW--PCAPGQKYYGRGPIQISYNYNYGPCGRAIGQNLLNNPDLVATNAVVSFKSAIWFWMT-AQSPKPSCHDVITGRWTPSAADRAANRLPGYGVITNIINGGLECGHG 290          
BLAST of CK939456 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 1.515e-40
Identity = 79/202 (39.11%), Postives = 112/202 (55.45%), Query Frame = 1
Query:  259 FENFFSKRNTPVAHAVGFWDYRSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQG 864
            F+     RN       GF+ Y +FI A   +   GFGT+G    + +EI AF A    +T+ G+  A  GP AWG C+  E      YC  S ++  PC PG +Y+GRG I I  NYNYG  G A+  DLLN+P+ +  +  ++F++A+W WMTP +  +PS HD  +G W+P+  D  + R P FG   NI+ G   CG+G
Sbjct:   89 FDQMLKHRNDNACQGKGFYSYNAFINAARSFP--GFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQW--PCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTP-QSPKPSCHDVIIGRWQPSAGDRAANRLPGFGVITNIINGGLECGRG 285          
BLAST of CK939456 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.979e-40
Identity = 79/202 (39.11%), Postives = 112/202 (55.45%), Query Frame = 1
Query:  259 FENFFSKRNTPVAHAVGFWDYRSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQG 864
            F+     RN       GF+ Y +FI A   +   GFGT+G    + +EI AF A    +T+ G+  A  GP AWG C+  E      YC  S ++  PC PG +Y+GRG I I  NYNYG  G A+  DLLN+P+ +  +  ++F++A+W WMTP +  +PS HD  +G W+P+  D  + R P FG   NI+ G   CG+G
Sbjct:   84 FDQMLKHRNDNACQGKGFYSYNAFINAARSFP--GFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQW--PCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTP-QSPKPSCHDVIIGRWQPSSADRAANRLPGFGVITNIINGGLECGRG 280          
BLAST of CK939456 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.520e-40
Identity = 82/212 (38.68%), Postives = 113/212 (53.30%), Query Frame = 1
Query:  229 TISDYFQVYQFENFFSKRNTPVAHAVGFWDYRSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQG 864
            ++S      QF+     RN     A GF+ Y +F+ A   +   GFGTTG+   + +E+ AFLA    +T+ G+  A  G  AWG C+  E   S  YC  S ++  PC PG  YYGRG I +  NYNYG  G A+  DLL +P+ +  +AT+ F+ AIW WMT  +  +PS+H    G W P+  D  + R P FG   NI+ G   CG G
Sbjct:   24 SVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFP--GFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQW--PCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMT-AQPPKPSSHAVIAGQWSPSGADRAAGRVPGFGVITNIINGGIECGHG 230          
BLAST of CK939456 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.283e-39
Identity = 80/209 (38.28%), Postives = 117/209 (55.98%), Query Frame = 1
Query:  259 FENFFSKRNTPVAHAVGFWDYRSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDXMNN 885
            + + F  ++     A GF+ Y SF+ A  ++    F  TG    + +E+ AFLA +  +T+ G+  A  GP AWGLCY  E++P  SYCD + K  +PC PG  Y+GRG I I WN+NYG  G+AL  D L +PE +   + +AF+ A+W WMTP + ++PS H   VG ++P   D  + R   FG   NI+ G   C +     +NN
Sbjct:   58 YASLFLHKDDAACPARGFYTYASFVRAATRFPR--FAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDKQ-WPCYPGKSYHGRGPIQISWNFNYGPAGQALGFDGLRNPEIVANCSDIAFQTALWFWMTP-RDTKPSCHQVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARVNN 262          
BLAST of CK939456 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.675e-39
Identity = 81/203 (39.90%), Postives = 113/203 (55.67%), Query Frame = 1
Query:  259 FENFFSKRNTPVAHAVG-FWDYRSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQG 864
            F+   + RN       G F+ Y +FI+A   +   GFGTTG    + +EI AF A    +T+ G+  A  GP AWG C+  E      YC  S ++  PC PG +Y+GRG I I  NYNYG  G A+  DLLN+P+ +  ++ ++F++AIW WMTP +  +PS HD   G W+P+  D  + R P FG   NI+ G   CG G
Sbjct:   75 FDQMLNHRNDNACQGKGNFYSYNAFISAAGSFP--GFGTTGDITARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLREQGSPGDYCTPSNQW--PCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSIISFKSAIWFWMTP-QSPKPSCHDVITGRWQPSGTDQAANRVPGFGVITNIINGGLECGHG 272          
BLAST of CK939456 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 2.188e-39
Identity = 81/212 (38.21%), Postives = 113/212 (53.30%), Query Frame = 1
Query:  229 TISDYFQVYQFENFFSKRNTPVAHAVGFWDYRSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQG 864
            T+S       F N    RN        F+ Y +F++A   +    F   G    K +EI AFL     +T+ G+  A  GP AWG C+  E +PS +YC  S ++  PC  G +YYGRG I I WNYNYG  G A+  DLLN+P+ +  +  ++F+ A+W WMTP +  +PS HD   G W P+  D  + R P +GT  NI+ G   CG+G
Sbjct:   67 TLSSLISGDTFNNMLKHRNDNACQGKPFYTYDAFLSAAKAFP--NFANKGDTATKKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLREQNPS-TYCQASSEF--PCASGKQYYGRGPIQISWNYNYGQCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTP-QSPKPSCHDVITGGWTPSSADRAAGRLPGYGTVTNIINGGLECGRG 272          
BLAST of CK939456 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.858e-39
Identity = 81/203 (39.90%), Postives = 112/203 (55.17%), Query Frame = 1
Query:  259 FENFFSKRNTPVAHAVG-FWDYRSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQG 864
            F+   + RN         F+ Y +F+TA   +   GFGTTG    + +EI AFLA    +T+ G+  A  GP AWG C+  E      YC  S ++  PC PG +Y+GRG I I  NYNYG  G A+  DLLN+P+ +  +  ++F++AIW WMTP +  +PS HD   G W+P+  D  + R P FG   NI+ G   CG G
Sbjct:   81 FDQMLNHRNDNACQGKNNFYSYNAFVTAAGSFP--GFGTTGDITARKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQW--PCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTP-QSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHG 278          
BLAST of CK939456 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.858e-39
Identity = 81/202 (40.10%), Postives = 112/202 (55.45%), Query Frame = 1
Query:  259 FENFFSKRNTPVAHAVGFWDYRSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQG 864
            F +    RN       GF+ Y +FI A   +   GFGTTG    + +EI AFLA    +T+ G+  A  GP AWG CY  E     +YC  S ++  PC  G +YYGRG I I +NYNYG  G+A+  DL+N+P+ +  +A ++F+ A W WMTP +  +PS H+   G W P+  D  + R P FG   NI+ G   CG+G
Sbjct:   74 FNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFP--GFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGAYCVPSAQW--PCAAGRKYYGRGPIQISYNYNYGQAGKAIGVDLVNNPDLVATDAVISFKTAFWFWMTP-QSPKPSCHNVITGGWTPSGADRSAGRLPGFGVITNIINGGVECGKG 270          
The following BLAST results are available for this feature:
BLAST of CK939456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI5_PHAVU3.987e-4140.10Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI3_TOBAC1.160e-4039.34Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI1_TOBAC1.515e-4039.11Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI2_TOBAC1.979e-4039.11Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI2_HORVU7.520e-4038.6826 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHI10_ORYSJ1.283e-3938.28Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI2_SOLTU1.675e-3939.90Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_PEA2.188e-3938.21Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHIC_SOLLC2.858e-3939.90Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHIB_VITVI2.858e-3940.10Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004750_C12 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939456 ID=CK939456; Name=CK939456; organism=Citrus sinensis; type=EST; length=888bp
GGGGAAGTGAATCTCGAAACAACAGGTAGATCTGGTGAGAACGAGAAAAT
GAAGATGAAGAATGGCAGTGTGGCAATGACACTGACAGTGGCACTAGTAC
TGGCACTGGCAGTGAGTTTGGCAAATGGAGATGAATCAGAGAAGGTGATA
GTGAAGAAGTTGAAGGGGAAAAAAGTTTGCATAAAAGGGTGGGAGTGCCC
AACATGGTCGAAATTCTGCTGTAACGAGACGATATCAGACTATTTCCAGG
TTTACCAGTTTGAGAATTTCTTCTCGAAAAGGAACACGCCGGTGGCACAT
GCCGTGGGATTCTGGGATTATCGGTCTTTCATTACTGCCACCGTCAAATA
TCAGCCCCTCGGCTTCGGTACCACCGGTACTAAGCTTGATAAGATGAAGG
AGATTTGCGCTTTTCTTGCCCACGTGGGCTGCAAGACCTCTTGTGGATAT
GGAGTGGCCACTGGAGGACCATTGGCCTGGGGACTTTGCTACAACCATGA
AATGAGCCCCAGTCAGTCATATTGTGATGATTCCTACAAATACACATATC
CCTGCACCCCTGGAGCTGAGTACTATGGCCGAGGTGCTATACCTATATAC
TGGAACTATAACTATGGAGCCACTGGGGAAGCATTGAAGGCAGATCTGTT
GAATCATCCCGAATACATTGAGCAGAATGCTACCCTTGCCTTTGAGGCTG
CAATTTGGAAGTGGATGACCCCAGTCAAGAAATCCCAGCCTTCAGCCCAT
GATGCCTTTGTTGGCAACTGGAAGCCCACCAAGAATGATACTTTGTCCAA
ACGGGGACCTAACTTTGGTACCACAATGAATATCCTCTATGGTGAGAGCG
TATGCGGTCAGGGTGATATTGATGNNATGAACAACATT
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