EG358186

Overview
NameEG358186
Unique NameEG358186
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6849 contig Csv1_Contig6849:1..856. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG358186 vs. ExPASy Swiss-Prot
Match: PALY_POPTR (Phenylalanine ammonia-lyase OS=Populus trichocarpa GN=PAL PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.398e-17
Identity = 41/48 (85.42%), Postives = 43/48 (89.58%), Query Frame = 3
Query:    3 VREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 146
            VRE LG+  LTGEKV SPGEEFDKVFTAMCQGKIIDPMLECL EWNG+
Sbjct:  663 VREELGTVLLTGEKVQSPGEEFDKVFTAMCQGKIIDPMLECLGEWNGS 710          
BLAST of EG358186 vs. ExPASy Swiss-Prot
Match: PAL2_ARATH (Phenylalanine ammonia-lyase 2 OS=Arabidopsis thaliana GN=PAL2 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.433e-16
Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 3
Query:    3 VREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 146
            VRE LG+  LTGEKV SPGEEFDKVFTAMC+GK+IDP+++CL+EWNGA
Sbjct:  665 VREELGTKLLTGEKVVSPGEEFDKVFTAMCEGKLIDPLMDCLKEWNGA 712          
BLAST of EG358186 vs. ExPASy Swiss-Prot
Match: PAL1_SOYBN (Phenylalanine ammonia-lyase 1 OS=Glycine max GN=PAL1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.433e-16
Identity = 39/48 (81.25%), Postives = 43/48 (89.58%), Query Frame = 3
Query:    3 VREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 146
            VRE LG+  LTGEKV SPGEEFDK+FTAMCQGKIIDP++ECL EWNGA
Sbjct:  661 VREELGTGLLTGEKVRSPGEEFDKLFTAMCQGKIIDPLMECLGEWNGA 708          
BLAST of EG358186 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.871e-16
Identity = 43/104 (41.35%), Postives = 65/104 (62.50%), Query Frame = 3
Query:  453 ETSQFTNARIDWKETPQAHVFKADLPELMIE*VNVEVEECRILQITGERSKEHEEQN----DKWHRV*RSSAKFLRRFRLPDNAKVEHVKVSMDHGVLTLTVPK 752
            + +  + AR+DW+ET  AH    D+P +  E + VEVE+ R+L+I+GER +E   +     D WHR  RS  +F R+ RLPDNA ++ +  S+D+GVLT+   K
Sbjct:   69 DVAMLSMARVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNGVLTVRFRK 172          
BLAST of EG358186 vs. ExPASy Swiss-Prot
Match: PAL1_PHAVU (Phenylalanine ammonia-lyase class 1 (Fragment) OS=Phaseolus vulgaris PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.444e-16
Identity = 39/48 (81.25%), Postives = 43/48 (89.58%), Query Frame = 3
Query:    3 VREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 146
            VRE LG+  LTGEKV SPGEEFDK+FTA+CQGKIIDP+LECL EWNGA
Sbjct:  454 VREELGTGLLTGEKVKSPGEEFDKLFTAICQGKIIDPLLECLGEWNGA 501          
BLAST of EG358186 vs. ExPASy Swiss-Prot
Match: PALY_PERAE (Phenylalanine ammonia-lyase OS=Persea americana GN=PAL PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.168e-16
Identity = 38/48 (79.17%), Postives = 44/48 (91.67%), Query Frame = 3
Query:    3 VREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 146
            VRE L ++ LTGEKV SPGEEFDKVF+A+CQGK+IDP+LECLREWNGA
Sbjct:  568 VREELKTSLLTGEKVRSPGEEFDKVFSAICQGKVIDPLLECLREWNGA 615          
BLAST of EG358186 vs. ExPASy Swiss-Prot
Match: PAL2_PHAVU (Phenylalanine ammonia-lyase class 2 OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.110e-16
Identity = 39/48 (81.25%), Postives = 43/48 (89.58%), Query Frame = 3
Query:    3 VREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 146
            VRE LG++ LTGEKV SPGEE DKVF+AMCQGKIIDP+LECL EWNGA
Sbjct:  660 VREELGTSLLTGEKVISPGEECDKVFSAMCQGKIIDPLLECLGEWNGA 707          
BLAST of EG358186 vs. ExPASy Swiss-Prot
Match: PAL2_POPKI (Phenylalanine ammonia-lyase G2B OS=Populus kitakamiensis GN=PALG2B PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.285e-16
Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 3
Query:    3 VREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 146
            VRE LG++ LTGEKV SPGEEFDKVFTA+C GK+IDP+LECL+EW+GA
Sbjct:  658 VREELGTSLLTGEKVKSPGEEFDKVFTAICAGKLIDPLLECLKEWDGA 705          
BLAST of EG358186 vs. ExPASy Swiss-Prot
Match: PALY_STYHU (Phenylalanine ammonia-lyase OS=Stylosanthes humilis GN=PAL17.1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.213e-15
Identity = 38/48 (79.17%), Postives = 42/48 (87.50%), Query Frame = 3
Query:    3 VREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 146
            VRE LG+  LTGEKV SPGEE DK+FTAMCQGKIIDP+LEC+ EWNGA
Sbjct:  663 VREELGTEMLTGEKVRSPGEECDKLFTAMCQGKIIDPLLECIGEWNGA 710          
BLAST of EG358186 vs. ExPASy Swiss-Prot
Match: PAL1_POPKI (Phenylalanine ammonia-lyase G1 OS=Populus kitakamiensis GN=PALG1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.213e-15
Identity = 36/48 (75.00%), Postives = 44/48 (91.67%), Query Frame = 3
Query:    3 VREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 146
            VRE LG++ LTGEKV SPGE+FDKVFTA+C GK++DP+LECL+EWNGA
Sbjct:  630 VREELGTSLLTGEKVKSPGEDFDKVFTAICAGKLMDPLLECLKEWNGA 677          
The following BLAST results are available for this feature:
BLAST of EG358186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
PALY_POPTR8.398e-1785.42Phenylalanine ammonia-lyase OS=Populus trichocarpa... [more]
PAL2_ARATH1.433e-1677.08Phenylalanine ammonia-lyase 2 OS=Arabidopsis thali... [more]
PAL1_SOYBN1.433e-1681.25Phenylalanine ammonia-lyase 1 OS=Glycine max GN=PA... [more]
HS232_ORYSJ1.871e-1641.3523.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
PAL1_PHAVU2.444e-1681.25Phenylalanine ammonia-lyase class 1 (Fragment) OS=... [more]
PALY_PERAE4.168e-1679.17Phenylalanine ammonia-lyase OS=Persea americana GN... [more]
PAL2_PHAVU7.110e-1681.25Phenylalanine ammonia-lyase class 2 OS=Phaseolus v... [more]
PAL2_POPKI9.285e-1677.08Phenylalanine ammonia-lyase G2B OS=Populus kitakam... [more]
PALY_STYHU1.213e-1579.17Phenylalanine ammonia-lyase OS=Stylosanthes humili... [more]
PAL1_POPKI1.213e-1575.00Phenylalanine ammonia-lyase G1 OS=Populus kitakami... [more]

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Properties
Property NameValue
Genbank description3a7 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl0003a7, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358186 ID=EG358186; Name=EG358186; organism=Citrus sinensis; type=EST; length=859bp
TCGTGAGGGAGGGGCTCGGGTCTAATTTTCTAACAGGGGAAAAAGTTACA
TCGCCCGGCGAGGAATTTGACAAAGTTTTTACAGCAATGTGCCAGGGCAA
GATCATTGATCCAATGCTGGAATGTCTCAGGGAATGGAATGGCGCCCCTC
TTCCAATTTGTTAGTTGTTTTTATTTTGTTTAATAACATGGTCTTCAATC
CCTTGTGTTCTTGTGTTCATAGAATTTGCCCATGCGAGTCAGTGGTACGC
GGGATCTTCGAACTGATTGATCAAAACACTTCTGAAGTTGTTGAGCATTT
AATTACCGCCCCAGGTTGCCTTAATGGCACTCATTCCAAGCATCTTCGGG
GGCCGAAGAACCAACGTGTTCGATCCATTTTCATTAGATGTATGGGATCC
TTTCGACGGGTTCTTGTCCTCTGCCCTTACCAACGCGCCGTCTTCTGCTA
GGGAAACATCCCAATTCACCAATGCAAGAATTGACTGGAAAGAGACTCCT
CAGGCTCATGTATTCAAGGCTGATCTTCCAGAGCTGATGATAGAATAAGT
GAATGTTGAGGTTGAAGAGTGCAGGATTCTGCAGATAACCGGGGAGAGGA
GCAAGGAGCATGAAGAGCAGAATGACAAGTGGCATCGCGTCTAGAGGAGC
AGTGCCAAGTTCCTGAGGAGGTTCAGGTTGCCCGACAATGCTAAGGTGGA
GCACGTTAAGGTCAGCATGGACCATGGTGTGCTCACACTGACTGTTCCTA
AACAGGAGGAGAAGAAACCTGAAGTTACACCCCATTGAGATCTCTGGCTA
AGTGATCAAGTGTTGATGTCTTTCAAGATAGTGTCTTTCGGCTCGCTAAT
ACAACTTGG
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