EG358186

Overview
NameEG358186
Unique NameEG358186
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6849 contig Csv1_Contig6849:1..856. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG358186 vs. ExPASy Swiss-Prot
Match: HSP22_MAIZE (17.8 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.901e-14
Identity = 53/138 (38.41%), Postives = 72/138 (52.17%), Query Frame = 3
Query:  384 LDVWDPFDGFLSSALTNAPSSA-----RETSQFTNARIDWKETPQAHVFKADLPELMIE*VNVEVEECRILQITGERSKEHEEQNDKWHRV*RSSAKFLRRFRLPDNAKVEHVKVSMDHGVLTLTV---PKQEEKKPE 773
            LDV D   G      T +  SA     R+         D KE P A+ F  D+P L    + V+VE+ R+L ++GER +E  E + K+ R+ R   KF+R+F LPDNA V+ V      GVLT+TV   P  E KKP+
Sbjct:   20 LDVPDGDAGAGGDNKTGSGGSATRTYVRDARAMAATPADVKELPGAYAFVVDMPGLGTGDIRVQVEDERVLVVSGERRREEREDDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVTVEKLPPPEPKKPK 157          
BLAST of EG358186 vs. ExPASy Swiss-Prot
Match: PAL5_SOLLC (Phenylalanine ammonia-lyase OS=Solanum lycopersicum GN=PAL5 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.095e-14
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 3
Query:    3 VREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 146
            VR+ +G+  LTGEKV SPGEE DKVFTA C G+IIDP+LECL+ WNGA
Sbjct:  669 VRQEVGTELLTGEKVRSPGEEIDKVFTAFCNGQIIDPLLECLKSWNGA 716          
BLAST of EG358186 vs. ExPASy Swiss-Prot
Match: PAL2_TOBAC (Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=PALA PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 6.654e-14
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = 3
Query:    3 VREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 146
            VR  LG+  LTGEKV SPGEE DKVFTAMC G+IID +LECL+EWNGA
Sbjct:  660 VRGELGAELLTGEKVRSPGEECDKVFTAMCNGQIIDSLLECLKEWNGA 707          
BLAST of EG358186 vs. ExPASy Swiss-Prot
Match: HS22C_CHLRE (Heat shock 22 kDa protein, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.654e-14
Identity = 57/153 (37.25%), Postives = 85/153 (55.56%), Query Frame = 3
Query:  324 MALIPSIFGGRRTNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFTNARIDWKETPQAHVFKADLPELMIE*VNVEVEECRILQITGERSKEH--EEQNDKWHRV*RSSAKFLRRFRLPDNAKVEHVKVSMDHGVLTLTVPKQE-EKKPE 773
            MAL   +FG    +  DPF  ++    +  +++AL  AP+SA +    T+A +D  E+P A    AD P +  + V VE++E  +L +TGER   H  +E   K  R  R++  F R F LP+NA  + +  +MD GVL +TVPK+E   KPE
Sbjct:    1 MALSNYVFGN---SAADPFFTEMDRAVNRMINNALGVAPTSAGKAGH-THAPMDIIESPTAFELHADAPGMGPDDVKVELQE-GVLMVTGERKLSHTTKEAGGKVWRSERTAYSFSRAFSLPENANPDGITAAMDKGVLVVTVPKREPPAKPE 148          
BLAST of EG358186 vs. ExPASy Swiss-Prot
Match: PALY_MALDO (Phenylalanine ammonia-lyase (Fragment) OS=Malus domestica GN=PAL PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.691e-14
Identity = 36/48 (75.00%), Postives = 39/48 (81.25%), Query Frame = 3
Query:    3 VREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 146
            VRE LG  +LTGEKV SPGEE DKVF A+CQGKIIDP+L CL  WNGA
Sbjct:  183 VREELGGEYLTGEKVRSPGEECDKVFQAICQGKIIDPILGCLEGWNGA 230          
BLAST of EG358186 vs. ExPASy Swiss-Prot
Match: PAL1_SOLTU (Phenylalanine ammonia-lyase 1 OS=Solanum tuberosum GN=PAL-1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.135e-13
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 3
Query:    3 VREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 146
            VR+ LG+  LTGEKV SPGEE +KVFTAMC G+I DP+LECL+ WNGA
Sbjct:  668 VRQELGTELLTGEKVRSPGEEIEKVFTAMCNGQINDPLLECLKSWNGA 715          
BLAST of EG358186 vs. ExPASy Swiss-Prot
Match: PALY_DIGLA (Phenylalanine ammonia-lyase OS=Digitalis lanata PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.482e-13
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 3
Query:    3 VREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 146
            +RE LG+NFLTGEKV SPGEE D+VFTAM +G I+DP+L+CL  WNGA
Sbjct:  661 IREELGTNFLTGEKVMSPGEECDRVFTAMSKGLIVDPLLKCLEGWNGA 708          
BLAST of EG358186 vs. ExPASy Swiss-Prot
Match: PAL1_RUBID (Phenylalanine ammonia-lyase 1 OS=Rubus idaeus GN=PAL1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.482e-13
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = 3
Query:    3 VREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 146
            VRE LG++ LTGEK+ SPGEE  KVF A+C GK++DP+LECL+EWNGA
Sbjct:  658 VREELGTSLLTGEKIKSPGEECYKVFNAICAGKLVDPLLECLKEWNGA 705          
BLAST of EG358186 vs. ExPASy Swiss-Prot
Match: HSP18_ORYSJ (18.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.0 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.936e-13
Identity = 48/124 (38.71%), Postives = 69/124 (55.65%), Query Frame = 3
Query:  429 TNAPSSA--RETSQFTNARIDWKETPQAHVFKADLPELMIE*VNVEVEECRILQITGERSK----EHEEQNDKWHRV*RSSAKFLRRFRLPDNAKVEHVKVSMDHGVLTLTV---PKQEEKKPE 773
            T  P+ A  R+         D K+ P A+ F  D+P L    + V+VEE R+L I+GER +    E +E++ K+ R+ R   KF+R+F LPDNA V+ +      GVLT+TV   P  E KKP+
Sbjct:   36 TGGPTRAYVRDARAMAATPADVKDLPGAYAFVVDMPGLKSSDIKVQVEEERLLVISGERRRGGGEEEKEESCKYLRMERRMGKFMRKFVLPDNADVDKISAVCQDGVLTVTVEKLPPPEPKKPK 159          
BLAST of EG358186 vs. ExPASy Swiss-Prot
Match: PAL3_PHAVU (Phenylalanine ammonia-lyase class 3 OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.529e-13
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 3
Query:    3 VREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNG 143
            VRE LG   LTGEK  SP EEF+KV+TAMCQ KIIDP+LECL +WNG
Sbjct:  659 VREELGIRLLTGEKALSPDEEFEKVYTAMCQAKIIDPILECLEDWNG 705          
The following BLAST results are available for this feature:
BLAST of EG358186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
HSP22_MAIZE3.901e-1438.4117.8 kDa class II heat shock protein OS=Zea mays P... [more]
PAL5_SOLLC5.095e-1470.83Phenylalanine ammonia-lyase OS=Solanum lycopersicu... [more]
PAL2_TOBAC6.654e-1475.00Phenylalanine ammonia-lyase OS=Nicotiana tabacum G... [more]
HS22C_CHLRE6.654e-1437.25Heat shock 22 kDa protein, chloroplastic OS=Chlamy... [more]
PALY_MALDO8.691e-1475.00Phenylalanine ammonia-lyase (Fragment) OS=Malus do... [more]
PAL1_SOLTU1.135e-1370.83Phenylalanine ammonia-lyase 1 OS=Solanum tuberosum... [more]
PALY_DIGLA1.482e-1370.83Phenylalanine ammonia-lyase OS=Digitalis lanata PE... [more]
PAL1_RUBID1.482e-1368.75Phenylalanine ammonia-lyase 1 OS=Rubus idaeus GN=P... [more]
HSP18_ORYSJ1.936e-1338.7118.0 kDa class II heat shock protein OS=Oryza sati... [more]
PAL3_PHAVU2.529e-1372.34Phenylalanine ammonia-lyase class 3 OS=Phaseolus v... [more]

Pages

back to top
Properties
Property NameValue
Genbank description3a7 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl0003a7, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358186 ID=EG358186; Name=EG358186; organism=Citrus sinensis; type=EST; length=859bp
TCGTGAGGGAGGGGCTCGGGTCTAATTTTCTAACAGGGGAAAAAGTTACA
TCGCCCGGCGAGGAATTTGACAAAGTTTTTACAGCAATGTGCCAGGGCAA
GATCATTGATCCAATGCTGGAATGTCTCAGGGAATGGAATGGCGCCCCTC
TTCCAATTTGTTAGTTGTTTTTATTTTGTTTAATAACATGGTCTTCAATC
CCTTGTGTTCTTGTGTTCATAGAATTTGCCCATGCGAGTCAGTGGTACGC
GGGATCTTCGAACTGATTGATCAAAACACTTCTGAAGTTGTTGAGCATTT
AATTACCGCCCCAGGTTGCCTTAATGGCACTCATTCCAAGCATCTTCGGG
GGCCGAAGAACCAACGTGTTCGATCCATTTTCATTAGATGTATGGGATCC
TTTCGACGGGTTCTTGTCCTCTGCCCTTACCAACGCGCCGTCTTCTGCTA
GGGAAACATCCCAATTCACCAATGCAAGAATTGACTGGAAAGAGACTCCT
CAGGCTCATGTATTCAAGGCTGATCTTCCAGAGCTGATGATAGAATAAGT
GAATGTTGAGGTTGAAGAGTGCAGGATTCTGCAGATAACCGGGGAGAGGA
GCAAGGAGCATGAAGAGCAGAATGACAAGTGGCATCGCGTCTAGAGGAGC
AGTGCCAAGTTCCTGAGGAGGTTCAGGTTGCCCGACAATGCTAAGGTGGA
GCACGTTAAGGTCAGCATGGACCATGGTGTGCTCACACTGACTGTTCCTA
AACAGGAGGAGAAGAAACCTGAAGTTACACCCCATTGAGATCTCTGGCTA
AGTGATCAAGTGTTGATGTCTTTCAAGATAGTGTCTTTCGGCTCGCTAAT
ACAACTTGG
back to top