CK939424

Overview
NameCK939424
Unique NameCK939424
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK939424 vs. ExPASy Swiss-Prot
Match: PSBH_PROHO (Photosystem II reaction center protein H OS=Prochlorothrix hollandica GN=psbH PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.106e-13
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = 3 
Query:   54 KRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVVMALFAVFLSIILEIYNSSVLLDGISLN 230
            ++T+    LKP NS  GKV PGWGTTPLMG+ M L  VFL IIL+IYNS+++LD  S+N
Sbjct:    3 QKTALSNFLKPFNSNAGKVVPGWGTTPLMGLFMGLLFVFLLIILQIYNSTIVLDAFSVN 61
The following BLAST results are available for this feature:
BLAST of CK939424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
PSBH_PROHO1.106e-1359.32Photosystem II reaction center protein H OS=Prochl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004750_G09 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIF_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939424 ID=CK939424; Name=CK939424; organism=Citrus sinensis; type=EST; length=839bp
GGGTAGGATTTATGGCTACACAAACAGTTGAGGGTAGTTCTAGAGCTCGT
CCAAAAAGAACTTCTGCAGGGGGGTTGTTGAAACCCTTGAATTCGGAATA
TGGTAAAGTAGCTCCTGGATGGGGAACTACTCCTTTGATGGGAGTCGTAA
TGGCTTTATTTGCGGTATTCCTATCTATTATTTTGGAGATTTATAATTCG
TCCGTTTTACTGGACGGAATTTCACTGAATTAGAATGAAATTTACAAGAA
TCACAAAATATTACCTTTTAAATAAGCATTTAGGTATCGGATTTTGATTT
TCGTTGATTGGTAGTTCGACCGCGAATTTTTTATTTCTGTATTTCCGGAA
TATGAGTGTGCGACTTGTTCGAATTGATCCTATTGATAGTACAGAGCATA
GATCTGTCGTCTTGATCGAGATGGCTTTACTCCGTCGGATATTCATTCGA
GTATCTGGAGCACGGAATATATGAAATAGATCACGAAGTATTCGAACTAT
GATTCATACTTAATATTCAGACCCCTTGGCCGGATTCAAAAAATTTTTCC
AAAGACAAAATTTGCAATTGCAAGATTTTTCTTCTTTCAAATTCCCCATT
TCTGCTTTTATTTTACTCAAAGCACAAATTTGAATAAATGATGATCCAAG
GATTCTTACTCATGGAATCTTTGGACTTAGTTTGAAGGTTTTATTGAATC
ATCGTGGTTCTAGTATGAATCTGAGGTTTCAATTGATTCATAGGGTCTTA
ACAAGAAAATTCCTAGCAATAATAAAGAAAACAAAAGTCAAGCTGCATTA
CATACAACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top