CK939405

Overview
NameCK939405
Unique NameCK939405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: ADF3_ARATH (Actin-depolymerizing factor 3 OS=Arabidopsis thaliana GN=ADF3 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.957e-40
Identity = 75/137 (54.74%), Postives = 103/137 (75.18%), Query Frame = 2
Query:  149 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLGELRNRAN 559
            NA SGM V D  K  F EL+ K+ HR++I+KI+           G P +++ED AA+LP ++CRYA++DFD+V+SE   +S+IFF+AWSP T+R+R+KM+YA+SKDRF+RELDGI  E+QATDPTEMDL   ++RAN
Sbjct:    3 NAASGMAVHDDCKLKFMELKTKRTHRFIIYKIEELQKQVIVEKIGEPGQTHEDLAASLPADECRYAIFDFDFVSSEGVPRSRIFFVAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFKSRAN 139          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: ADF9_ARATH (Actin-depolymerizing factor 9 OS=Arabidopsis thaliana GN=ADF9 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.657e-39
Identity = 74/129 (57.36%), Postives = 95/129 (73.64%), Query Frame = 2
Query:  170 VADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLGELRNRA 556
            + D  K +F E++ KKVHRYV++K++           G   ESY+D AA+LPE+DCRYAV+DFDYVT +NC+ SKIFFI WSP  SRIR KM+YATSK   RR LDG+HYE+QATDPTEM   ++++RA
Sbjct:    1 MTDDCKKSFMEMKWKKVHRYVVYKLEEKSRKVTVDKVGAAGESYDDLAASLPEDDCRYAVFDFDYVTVDNCRMSKIFFITWSPEASRIREKMMYATSKSGLRRVLDGVHYELQATDPTEMGFDKIQDRA 129          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: ADF12_ARATH (Actin-depolymerizing factor 12 OS=Arabidopsis thaliana GN=ADF12 PE=2 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.657e-39
Identity = 79/136 (58.09%), Postives = 100/136 (73.53%), Query Frame = 2
Query:  149 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLGELRNRA 556
            NA SGM V D  K  F EL+ K+ +R++IF+ID           G P E+Y+DF   LP N+CRYAVYDFD+ T+EN QKSKIFFIAWSP +SR+R KM+YA+SKDRF+RELDGI  E+QATDP+EM L  +++RA
Sbjct:    3 NAASGMAVEDECKLKFLELKAKRNYRFIIFRIDGQQVVVEKL--GSPQENYDDFTNYLPPNECRYAVYDFDFTTAENIQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSLDIIKSRA 136          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: ADF1_MAIZE (Actin-depolymerizing factor 1 OS=Zea mays GN=ADF1 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.820e-39
Identity = 75/137 (54.74%), Postives = 97/137 (70.80%), Query Frame = 2
Query:  149 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLGELRNRAN 559
            N++SG+ V D  K  F EL+ ++  R+++F+ID           G P + Y DF  +LP N+CRYA+YD D+ T ENCQKSKIFF +WSP T+R R+KMLYA+SKDRFRRELDGI  EIQATDP+EM L  +R+R N
Sbjct:    3 NSSSGLAVNDECKVKFRELKSRRTFRFIVFRIDDTDMEIKVDRLGEPNQGYGDFTDSLPANECRYAIYDLDFTTIENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIVRSRTN 139          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: ADF2_MAIZE (Actin-depolymerizing factor 2 OS=Zea mays GN=ADF2 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.960e-38
Identity = 72/137 (52.55%), Postives = 98/137 (71.53%), Query Frame = 2
Query:  149 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLGELRNRAN 559
            N++SG+ V+D  K  F +L+ ++  R+++F+ID           G P + Y DF  +LP ++CRYA+YD D+ T ENCQKSKIFF +WSP T+R R+KMLYA+SKDRFRRELDGI  EIQATDP+EM L  +++R N
Sbjct:    3 NSSSGLAVSDECKVKFRDLKARRSFRFIVFRIDDKDMEIKVDRLGEPNQGYGDFTDSLPADECRYAIYDLDFTTVENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIVKSRTN 139          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: ADF8_ORYSJ (Putative actin-depolymerizing factor 8 OS=Oryza sativa subsp. japonica GN=ADF8 PE=3 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.551e-37
Identity = 78/130 (60.00%), Postives = 96/130 (73.85%), Query Frame = 2
Query:  170 VADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLGELRNRAN 559
            V + SK+AF EL R+KVHRYVIFKID          TG P ESY+DF A+LP +    AVYD D+V+ +NC+KSKIFFI+WSPS S IRAK +YA  +++FR ELDG+H+EIQATDP +MDL  LR RAN
Sbjct:   19 VPEKSKSAFWELMRRKVHRYVIFKIDDRREEIVVEKTGAPWESYDDFTASLPAD----AVYDLDFVSDDNCRKSKIFFISWSPSLSCIRAKTIYAVWRNQFRHELDGVHFEIQATDPDDMDLEVLRGRAN 144          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: ADF_BRANA (Actin-depolymerizing factor (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.924e-36
Identity = 72/127 (56.69%), Postives = 97/127 (76.38%), Query Frame = 2
Query:  176 DHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLGELRNRA 556
            D+ K  F EL +K++ R++IF+ID           G P E+Y+DF A+LP ++CRYAV+DFD+ T+ENCQKSKIFFIAWSP +SR+R KM+YA+SKDRF+RELDGI  E+QATDP+EM    +++RA
Sbjct:    2 DNCKLKFLEL-KKRIFRFIIFRIDGQQVVVEKL--GNPQETYDDFTASLPADECRYAVFDFDFTTNENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKSRA 125          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: ADF3_MAIZE (Actin-depolymerizing factor 3 OS=Zea mays GN=ADF3 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.475e-35
Identity = 68/136 (50.00%), Postives = 98/136 (72.06%), Query Frame = 2
Query:  149 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLGELRNRA 556
            NA SG+ V D     F ELQ K++HR++ FK+D           G  A SY+DF  +LPENDCRYA+YDFD+VT+E+ QKS+IF+I WSPS++++++KMLYA+S  +F+  L+GI  E+QATD +E+ L E+++RA
Sbjct:    3 NARSGVAVNDECMLKFGELQSKRLHRFITFKMDDKFKEIVVDQVGDRATSYDDFTNSLPENDCRYAIYDFDFVTAEDVQKSRIFYILWSPSSAKVKSKMLYASSNQKFKSGLNGIQVELQATDASEISLDEIKDRA 138          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: ADF4_ORYSJ (Actin-depolymerizing factor 4 OS=Oryza sativa subsp. japonica GN=ADF4 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.774e-33
Identity = 63/135 (46.67%), Postives = 95/135 (70.37%), Query Frame = 2
Query:  149 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLGELRNR 553
            N++SG+ + D  K  F ELQ K++HR++ F +D           G    SYEDF ++LPE DCR+A+YDFD++T+E+  KS+IF+I WSP  +++R+KMLYA+S +RF++EL+GI  E+QATD  E+ L  L++R
Sbjct:    3 NSSSGVAIHDDCKLKFNELQSKRMHRFITFMMDNKGKEIIVDKIGDRTTSYEDFTSSLPEGDCRFAIYDFDFLTAEDVPKSRIFYILWSPDNAKVRSKMLYASSNERFKKELNGIQLEVQATDAGEISLDALKDR 137          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: ADF3_ORYSJ (Actin-depolymerizing factor 3 OS=Oryza sativa subsp. japonica GN=ADF3 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.232e-27
Identity = 57/148 (38.51%), Postives = 91/148 (61.49%), Query Frame = 2
Query:  149 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSE-----------NCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLGELRNRAN 559
            NATSG+ V++  K  F EL+  + HR+V+FKID           G     +++  A+LP + CRYAVYD D+  S+              +SKIFF++WSP+ + +R+KM+YA+S + F++ELDG+  ++QATDP+E+ L  L++  +
Sbjct:    3 NATSGVAVSEECKARFQELRAGRAHRFVVFKIDDAMRQVVVDRVGPRDAGFDELTASLPADGCRYAVYDHDFTVSDATATAAAGEGGEAPRSKIFFVSWSPAAADVRSKMVYASSNEGFKKELDGVQIDLQATDPSELTLDVLKDHTS 150          
The following BLAST results are available for this feature:
BLAST of CK939405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
ADF3_ARATH1.957e-4054.74Actin-depolymerizing factor 3 OS=Arabidopsis thali... [more]
ADF9_ARATH1.657e-3957.36Actin-depolymerizing factor 9 OS=Arabidopsis thali... [more]
ADF12_ARATH1.657e-3958.09Actin-depolymerizing factor 12 OS=Arabidopsis thal... [more]
ADF1_MAIZE4.820e-3954.74Actin-depolymerizing factor 1 OS=Zea mays GN=ADF1 ... [more]
ADF2_MAIZE6.960e-3852.55Actin-depolymerizing factor 2 OS=Zea mays GN=ADF2 ... [more]
ADF8_ORYSJ1.551e-3760.00Putative actin-depolymerizing factor 8 OS=Oryza sa... [more]
ADF_BRANA2.924e-3656.69Actin-depolymerizing factor (Fragment) OS=Brassica... [more]
ADF3_MAIZE2.475e-3550.00Actin-depolymerizing factor 3 OS=Zea mays GN=ADF3 ... [more]
ADF4_ORYSJ1.774e-3346.67Actin-depolymerizing factor 4 OS=Oryza sativa subs... [more]
ADF3_ORYSJ4.232e-2738.51Actin-depolymerizing factor 3 OS=Oryza sativa subs... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A08 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939405 ID=CK939405; Name=CK939405; organism=Citrus sinensis; type=EST; length=884bp
GGGGATTACGTATAAAACTAGGCCACTTCTTTTAGTTTTATTCTGAGCAC
AATACATTTTCGCTCTCTTTCATTGTTTATTTACTTGCTCTGGTGATCTG
CGTTCTGTTGCTGCCGCCGCCATGTCTTTCAGAGGACTAAGTCGACCAAA
TGCCACTTCTGGCATGGGCGTTGCTGATCACAGCAAAAATGCATTCACGG
AATTGCAAAGGAAGAAGGTTCACCGTTATGTGATTTTTAAGATTGATGAG
AAGAAAAAGGAGGTTGTGGTTGAGAAGACTGGTGGCCCCGCTGAGAGCTA
CGAGGATTTCGCTGCTGCTTTGCCTGAGAATGATTGTCGATATGCTGTAT
ATGACTTTGACTATGTGACTTCTGAGAATTGTCAGAAGAGCAAGATATTC
TTCATTGCATGGTCCCCTTCAACCTCTAGAATCCGTGCCAAGATGCTGTA
CGCCACATCTAAAGACAGATTTCGACGGGAGCTGGATGGTATCCACTATG
AGATTCAGGCTACTGATCCTACAGAGATGGATCTTGGAGAGCTTAGAAAC
CGTGCAAACTGAAGAGTCTGCAGTTTTGCAGTTTCTTCCTTCCATGAAAA
AAAAATCAGCAAGGGGTTCTGCCAACTGTTGCTCCTTGCTTCATTAATCT
ATGTGCAAAAATCTATGCGTAATCTTCGAATAACTGGCAATGTGGGAAGA
CTGATTGGGCTGAGGTTATCTTGTTGTGGTGAAATTAGCTTCCCAGTGGT
TTATTGCTACTCTGATGAATATAAGTTTGTTTGTTGGGTATTTGGAAATC
CTAGAACATATTATCGTAACATTGATCTCTAATTCATATTCGCTGTCCTT
GTACTTCCTCCTTGATTTTATTTTCTATAATGTG
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