CK939405

Overview
NameCK939405
Unique NameCK939405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: ACTP_ACACA (Actophorin OS=Acanthamoeba castellanii PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 7.471e-24
Identity = 53/133 (39.85%), Postives = 82/133 (61.65%), Query Frame = 2
Query:  158 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLGELRNRA 556
            SG+ V+D     F EL+    HRYV FK++           GGP  +YEDF + LPE DCRYA++D+++   +  Q++KI FI W+P ++ I++KM+Y ++KD  +++L GI  E+QATD  E+    +  RA
Sbjct:    2 SGIAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRYAIFDYEFQV-DGGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAAEISEDAVSERA 133          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: ADF11_ARATH (Putative actin-depolymerizing factor 11 OS=Arabidopsis thaliana GN=ADF11 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.174e-23
Identity = 57/137 (41.61%), Postives = 84/137 (61.31%), Query Frame = 2
Query:  164 MGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXT-----GGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLGELRNRAN 559
            M + D  K  F EL+ ++  R +++KI+                G   +SYE+FA +LP ++CRYA+ D ++V  E     KI FIAWSPST+++R KM+Y+++KDRF+RELDGI  E  ATD T++ L  +R R N
Sbjct:    1 MVLHDDCKLTFLELKERRTFRSIVYKIEDNMQVIVEKHHYKKMHGEREQSYEEFANSLPADECRYAILDIEFVPGER----KICFIAWSPSTAKMRKKMIYSSTKDRFKRELDGIQVEFHATDLTDISLDAIRRRIN 133          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: COFI_YARLI (Cofilin OS=Yarrowia lipolytica GN=COF1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.842e-23
Identity = 57/125 (45.60%), Postives = 79/125 (63.20%), Query Frame = 2
Query:  158 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDY-VTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEM 529
            SG+ V D +  AF EL+  K   ++I+KI+           G   +SY+ F   LPENDCRYAVYDF+Y ++S   ++SK+ F  WSP T+ +R+KM+YA+SKD  RR L GI  EIQ TD +E+
Sbjct:   14 SGVAVNDSALQAFNELKLGKKVTFIIYKINDAKTEIVVEEEG-TTDSYDTFLGKLPENDCRYAVYDFEYEISSGEGKRSKLVFFTWSPDTAPVRSKMIYASSKDSLRRALTGISTEIQGTDFSEV 137          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: COFI_ZYGRO (Cofilin OS=Zygosaccharomyces rouxii GN=cof1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.409e-22
Identity = 55/135 (40.74%), Postives = 82/135 (60.74%), Query Frame = 2
Query:  158 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSEN-CQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLGELRNRAN 559
            SG+ VAD S  AF +L+  K +++V++ I           T   ++SY++F   LPENDC YA+YDF+Y    N  ++SKI F  WSP T+ +R+KM+YA+SKD  RR L G+  +IQ TD +E+    +  R +
Sbjct:    4 SGVSVADESLQAFNDLKLGKKYKFVLYGISEDKTTIVVKETS-TSQSYDEFLGKLPENDCLYAIYDFEYEIGGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALTGVSSDIQGTDFSEVSFETVLERVS 137          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: COFI_KLULA (Cofilin OS=Kluyveromyces lactis GN=COF1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.840e-22
Identity = 53/125 (42.40%), Postives = 79/125 (63.20%), Query Frame = 2
Query:  158 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSEN-CQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEM 529
            SG+ VAD S NAF +L+  K ++++++ ++          T    + Y+ F   LPENDC YAVYDF+Y    N  ++SKI F  WSP T+ +R+KM+YA+SKD  RR L+G+  +IQ TD +E+
Sbjct:    4 SGVAVADESLNAFNDLKLGKKYKFILYALNDSKTEIIVKETSAE-QDYDKFLEQLPENDCLYAVYDFEYELGNNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSSDIQGTDFSEV 127          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: COFI_YEAST (Cofilin OS=Saccharomyces cerevisiae GN=COF1 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.992e-22
Identity = 52/135 (38.52%), Postives = 81/135 (60.00%), Query Frame = 2
Query:  158 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDY-VTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLGELRNRAN 559
            SG+ VAD S  AF +L+  K +++++F ++          T     SY+ F   LPENDC YA+YDF+Y +     ++SKI F  WSP T+ +R+KM+YA+SKD  RR L+G+  ++Q TD +E+    +  R +
Sbjct:    4 SGVAVADESLTAFNDLKLGKKYKFILFGLNDAKTEIVVKETSTDP-SYDAFLEKLPENDCLYAIYDFEYEINGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSTDVQGTDFSEVSYDSVLERVS 137          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: COFI_CANGA (Cofilin OS=Candida glabrata GN=COF1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.992e-22
Identity = 55/125 (44.00%), Postives = 78/125 (62.40%), Query Frame = 2
Query:  158 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSEN-CQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEM 529
            SG+ VAD S  AF +L+    +++V+F ++          T     SY+ F   LPENDC YAVYDF+Y  SE+  ++SKI F  WSP T+ +R KM+YA+SKD  +R L+G+  EIQ TD +E+
Sbjct:    4 SGVAVADESIQAFNDLKLGMKYKFVLFSLNDAKTEIVVKETSSDP-SYDAFLEKLPENDCLYAVYDFEYQISESEGKRSKIVFFTWSPDTASVRPKMVYASSKDALKRALNGVAIEIQGTDFSEV 127          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: COFI_PICAN (Cofilin OS=Pichia angusta GN=COF1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.132e-22
Identity = 54/125 (43.20%), Postives = 80/125 (64.00%), Query Frame = 2
Query:  158 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSE-NCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEM 529
            SG+ V+D +  AF +L+  K  + +I+K++          T    ++Y+ F   LPENDCRYAVYDF+Y   + + +++KI F  WSP T+ +RAKM+YA+SKD  RR L+GI  EIQ TD +E+
Sbjct:    4 SGVAVSDEALKAFNDLKLGKKFKSIIYKLNDAKTEIVVDSTS-TEDAYDAFVEDLPENDCRYAVYDFEYEVGQGDGKRNKIVFYQWSPDTASVRAKMVYASSKDALRRALNGIGTEIQGTDFSEV 127          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: COFI_DEBHA (Cofilin OS=Debaryomyces hansenii GN=COF1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.558e-21
Identity = 51/135 (37.78%), Postives = 84/135 (62.22%), Query Frame = 2
Query:  158 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDY-VTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLGELRNRAN 559
            SG+ VAD S  AF +L+  K ++++IF ++          T   ++ Y+ F   LPEN+C+YA+YDF+Y +     ++SKI F  WSP T+ I++KM+YA+SKD  RR L+G+  ++Q TD +E+    + +R +
Sbjct:    4 SGVAVADESLTAFNDLKLGKKYKFIIFALNDQKTEIVVEETSNNSD-YDAFLEKLPENECKYAIYDFEYEIGGGEGKRSKIVFFTWSPDTAPIKSKMIYASSKDALRRALNGVSSDVQGTDFSEVAYESVLDRVS 137          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: COFI_ASHGO (Cofilin OS=Ashbya gossypii GN=COF1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.657e-21
Identity = 53/125 (42.40%), Postives = 79/125 (63.20%), Query Frame = 2
Query:  158 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDY-VTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEM 529
            SG+ VAD S  AF +L+  K +++V+F ++          T    + Y+ F   LPE+DC YAVYDF+Y ++    ++SKI F  WSP T+ IR+KM+YA+SKD  RR L+G+  +IQ TD +E+
Sbjct:    4 SGVAVADESLTAFNDLKLGKKYKFVLFGLNADKTSIIVKETSNERD-YDVFLEKLPEDDCLYAVYDFEYEISGAEGKRSKIVFFTWSPDTAPIRSKMVYASSKDALRRALNGVSSDIQGTDFSEV 127          
The following BLAST results are available for this feature:
BLAST of CK939405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
ACTP_ACACA7.471e-2439.85Actophorin OS=Acanthamoeba castellanii PE=1 SV=2[more]
ADF11_ARATH2.174e-2341.61Putative actin-depolymerizing factor 11 OS=Arabido... [more]
COFI_YARLI4.842e-2345.60Cofilin OS=Yarrowia lipolytica GN=COF1 PE=3 SV=1[more]
COFI_ZYGRO1.409e-2240.74Cofilin OS=Zygosaccharomyces rouxii GN=cof1 PE=2 S... [more]
COFI_KLULA1.840e-2242.40Cofilin OS=Kluyveromyces lactis GN=COF1 PE=3 SV=1[more]
COFI_YEAST6.992e-2238.52Cofilin OS=Saccharomyces cerevisiae GN=COF1 PE=1 S... [more]
COFI_CANGA6.992e-2244.00Cofilin OS=Candida glabrata GN=COF1 PE=3 SV=1[more]
COFI_PICAN9.132e-2243.20Cofilin OS=Pichia angusta GN=COF1 PE=2 SV=1[more]
COFI_DEBHA1.558e-2137.78Cofilin OS=Debaryomyces hansenii GN=COF1 PE=3 SV=1[more]
COFI_ASHGO2.657e-2142.40Cofilin OS=Ashbya gossypii GN=COF1 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A08 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939405 ID=CK939405; Name=CK939405; organism=Citrus sinensis; type=EST; length=884bp
GGGGATTACGTATAAAACTAGGCCACTTCTTTTAGTTTTATTCTGAGCAC
AATACATTTTCGCTCTCTTTCATTGTTTATTTACTTGCTCTGGTGATCTG
CGTTCTGTTGCTGCCGCCGCCATGTCTTTCAGAGGACTAAGTCGACCAAA
TGCCACTTCTGGCATGGGCGTTGCTGATCACAGCAAAAATGCATTCACGG
AATTGCAAAGGAAGAAGGTTCACCGTTATGTGATTTTTAAGATTGATGAG
AAGAAAAAGGAGGTTGTGGTTGAGAAGACTGGTGGCCCCGCTGAGAGCTA
CGAGGATTTCGCTGCTGCTTTGCCTGAGAATGATTGTCGATATGCTGTAT
ATGACTTTGACTATGTGACTTCTGAGAATTGTCAGAAGAGCAAGATATTC
TTCATTGCATGGTCCCCTTCAACCTCTAGAATCCGTGCCAAGATGCTGTA
CGCCACATCTAAAGACAGATTTCGACGGGAGCTGGATGGTATCCACTATG
AGATTCAGGCTACTGATCCTACAGAGATGGATCTTGGAGAGCTTAGAAAC
CGTGCAAACTGAAGAGTCTGCAGTTTTGCAGTTTCTTCCTTCCATGAAAA
AAAAATCAGCAAGGGGTTCTGCCAACTGTTGCTCCTTGCTTCATTAATCT
ATGTGCAAAAATCTATGCGTAATCTTCGAATAACTGGCAATGTGGGAAGA
CTGATTGGGCTGAGGTTATCTTGTTGTGGTGAAATTAGCTTCCCAGTGGT
TTATTGCTACTCTGATGAATATAAGTTTGTTTGTTGGGTATTTGGAAATC
CTAGAACATATTATCGTAACATTGATCTCTAATTCATATTCGCTGTCCTT
GTACTTCCTCCTTGATTTTATTTTCTATAATGTG
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