CK939405

Overview
NameCK939405
Unique NameCK939405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: COFI_USTMA (Cofilin OS=Ustilago maydis GN=COF1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.487e-19
Identity = 48/125 (38.40%), Postives = 77/125 (61.60%), Query Frame = 2
Query:  155 TSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEM 529
            +SG+ V+    + F EL+  K  +Y+I+ ++          T   + SY+DF A LP  +CRYA+YDF+Y   +  +++KI F +WSP  ++I+ KM++A+SKD  R+ L GI  EIQ TD +E+
Sbjct:    2 SSGVKVSQECLDKFQELKLGKKIKYIIYSLNDKNTEIVVQNTS-TSTSYDDFLAELPPTECRYAIYDFEYEKGDAGKRNKICFFSWSPDDAKIKPKMVFASSKDALRKALVGISTEIQGTDFSEV 125          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: COFI_SCHPO (Cofilin OS=Schizosaccharomyces pombe GN=cof1 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.750e-18
Identity = 50/124 (40.32%), Postives = 74/124 (59.68%), Query Frame = 2
Query:  158 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEM 529
            SG+ V+     AF EL+  K  RYV+FK++               + ++ F   LPE DCRYA+YDF++   E   ++KI FI+WSP  + I++KM+Y++SKD  RR   GI  +IQATD +E+
Sbjct:    4 SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKD-FDTFLGDLPEKDCRYAIYDFEFNLGEGV-RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATDFSEV 125          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: COF1_DICDI (Cofilin-1 OS=Dictyostelium discoideum GN=cofA PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.782e-17
Identity = 46/125 (36.80%), Postives = 71/125 (56.80%), Query Frame = 2
Query:  155 TSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEM 529
            +SG+ +A +  + F +L+  + +  +I++I           T     S+++F   LPEN+CRY V D+ Y   E  QKSKI F+AW P T+ I+ KM+  +SKD  R+   GI  EIQ TD +E+
Sbjct:    2 SSGIALAPNCVSTFNDLKLGRKYGGIIYRISDDSKEIIVDSTLPAGCSFDEFTKCLPENECRYVVLDYQY-KEEGAQKSKICFVAWCPDTANIKKKMMATSSKDSLRKACVGIQVEIQGTDASEV 125          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: COFI_CRYNE (Cofilin OS=Cryptococcus neoformans GN=COF1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.845e-17
Identity = 49/135 (36.30%), Postives = 74/135 (54.81%), Query Frame = 2
Query:  155 TSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDY-VTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLGELRNRA 556
            +SG+         F EL+  K   YVI+ +                + ++ F A LPE DCR+AVYDF++ +      ++K+ FI WSP  + ++ KM++A+SK+  RR LDGIH EIQATD +E+    L  +A
Sbjct:    2 SSGVQPTQECLEKFQELKTGKKLTYVIYGLSEDKRSIVVLKASEDKD-FDSFVAELPEKDCRWAVYDFEFTLPGGEGVRNKLCFIVWSPDDASVKNKMIFASSKEAIRRRLDGIHTEIQATDFSEITKDALFEKA 135          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: CADF_DROME (Cofilin/actin-depolymerizing factor homolog OS=Drosophila melanogaster GN=tsr PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.971e-16
Identity = 47/131 (35.88%), Postives = 76/131 (58.02%), Query Frame = 2
Query:  158 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPE---NDCRYAVYDFDYV-----TSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTE 526
            SG+ V+D  K  + E+++ K HRYVIF I               AE Y+ F   + +    +CRY ++DF+Y+     TSE+ +K K+F ++W P T++++ KMLY++S D  ++ L G+   IQATD +E
Sbjct:    3 SGVTVSDVCKTTYEEIKKDKKHRYVIFYIRDEKQIDVETVADRNAE-YDQFLEDIQKCGPGECRYGLFDFEYMHQCQGTSESSKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSE 132          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: COF4_DICDI (Cofilin-4 OS=Dictyostelium discoideum GN=cofE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.561e-13
Identity = 34/87 (39.08%), Postives = 57/87 (65.52%), Query Frame = 2
Query:  293 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLGELRNR 553
            ES+ED+    P++DCRY VYDF Y+ ++  +K+KIFFI+W P  ++I+ K+++  ++    ++L GI   I+ATD TE+    +  R
Sbjct:   47 ESFEDYINKFPQDDCRYGVYDFSYMDNKENKKNKIFFISWCPVETKIKNKIVHTATEQSIYKKLVGIDAIIKATDNTEISQSLVEER 133          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: DEST_PIG (Destrin OS=Sus scrofa GN=DSTN PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 1.012e-12
Identity = 30/80 (37.50%), Postives = 53/80 (66.25%), Query Frame = 2
Query:  293 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMD 532
            + ++ F   LPE DCRYA+YD  + T E+ +K ++ F  W+P  + +++KM+YA+SKD  +++  GI +E QA  P +++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLN 144          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: DEST_HUMAN (Destrin OS=Homo sapiens GN=DSTN PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 1.012e-12
Identity = 30/80 (37.50%), Postives = 53/80 (66.25%), Query Frame = 2
Query:  293 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMD 532
            + ++ F   LPE DCRYA+YD  + T E+ +K ++ F  W+P  + +++KM+YA+SKD  +++  GI +E QA  P +++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLN 144          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: DEST_BOVIN (Destrin OS=Bos taurus GN=DSTN PE=2 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 1.012e-12
Identity = 30/80 (37.50%), Postives = 53/80 (66.25%), Query Frame = 2
Query:  293 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMD 532
            + ++ F   LPE DCRYA+YD  + T E+ +K ++ F  W+P  + +++KM+YA+SKD  +++  GI +E QA  P +++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLN 144          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: DEST_RAT (Destrin OS=Rattus norvegicus GN=Dstn PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 1.322e-12
Identity = 30/80 (37.50%), Postives = 53/80 (66.25%), Query Frame = 2
Query:  293 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMD 532
            + ++ F   LPE DCRYA+YD  + T E+ +K ++ F  W+P  + +++KM+YA+SKD  +++  GI +E QA  P +++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFPGIKHEYQANGPEDLN 144          
The following BLAST results are available for this feature:
BLAST of CK939405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
COFI_USTMA2.487e-1938.40Cofilin OS=Ustilago maydis GN=COF1 PE=3 SV=1[more]
COFI_SCHPO2.750e-1840.32Cofilin OS=Schizosaccharomyces pombe GN=cof1 PE=1 ... [more]
COF1_DICDI1.782e-1736.80Cofilin-1 OS=Dictyostelium discoideum GN=cofA PE=1... [more]
COFI_CRYNE8.845e-1736.30Cofilin OS=Cryptococcus neoformans GN=COF1 PE=3 SV... [more]
CADF_DROME1.971e-1635.88Cofilin/actin-depolymerizing factor homolog OS=Dro... [more]
COF4_DICDI1.561e-1339.08Cofilin-4 OS=Dictyostelium discoideum GN=cofE PE=3... [more]
DEST_PIG1.012e-1237.50Destrin OS=Sus scrofa GN=DSTN PE=1 SV=3[more]
DEST_HUMAN1.012e-1237.50Destrin OS=Homo sapiens GN=DSTN PE=1 SV=3[more]
DEST_BOVIN1.012e-1237.50Destrin OS=Bos taurus GN=DSTN PE=2 SV=3[more]
DEST_RAT1.322e-1237.50Destrin OS=Rattus norvegicus GN=Dstn PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A08 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939405 ID=CK939405; Name=CK939405; organism=Citrus sinensis; type=EST; length=884bp
GGGGATTACGTATAAAACTAGGCCACTTCTTTTAGTTTTATTCTGAGCAC
AATACATTTTCGCTCTCTTTCATTGTTTATTTACTTGCTCTGGTGATCTG
CGTTCTGTTGCTGCCGCCGCCATGTCTTTCAGAGGACTAAGTCGACCAAA
TGCCACTTCTGGCATGGGCGTTGCTGATCACAGCAAAAATGCATTCACGG
AATTGCAAAGGAAGAAGGTTCACCGTTATGTGATTTTTAAGATTGATGAG
AAGAAAAAGGAGGTTGTGGTTGAGAAGACTGGTGGCCCCGCTGAGAGCTA
CGAGGATTTCGCTGCTGCTTTGCCTGAGAATGATTGTCGATATGCTGTAT
ATGACTTTGACTATGTGACTTCTGAGAATTGTCAGAAGAGCAAGATATTC
TTCATTGCATGGTCCCCTTCAACCTCTAGAATCCGTGCCAAGATGCTGTA
CGCCACATCTAAAGACAGATTTCGACGGGAGCTGGATGGTATCCACTATG
AGATTCAGGCTACTGATCCTACAGAGATGGATCTTGGAGAGCTTAGAAAC
CGTGCAAACTGAAGAGTCTGCAGTTTTGCAGTTTCTTCCTTCCATGAAAA
AAAAATCAGCAAGGGGTTCTGCCAACTGTTGCTCCTTGCTTCATTAATCT
ATGTGCAAAAATCTATGCGTAATCTTCGAATAACTGGCAATGTGGGAAGA
CTGATTGGGCTGAGGTTATCTTGTTGTGGTGAAATTAGCTTCCCAGTGGT
TTATTGCTACTCTGATGAATATAAGTTTGTTTGTTGGGTATTTGGAAATC
CTAGAACATATTATCGTAACATTGATCTCTAATTCATATTCGCTGTCCTT
GTACTTCCTCCTTGATTTTATTTTCTATAATGTG
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