CK939394

Overview
NameCK939394
Unique NameCK939394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939394 vs. ExPASy Swiss-Prot
Match: GSK3B_HUMAN (Glycogen synthase kinase-3 beta OS=Homo sapiens GN=GSK3B PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 6.717e-21
Identity = 54/101 (53.47%), Postives = 74/101 (73.27%), Query Frame = 2
Query:  509 NGTEAGQVIATTVGGRNGQPKQTISYMAERVVGTGSFGVVFQAKCLETGDSVAIKKVLQDKRYKNRELQIMRLLNHPNVVSLKHCFFSTTE-KDELXXNLV 808
            +G++   V+AT   G+     Q +SY   +V+G GSFGVV+QAK  ++G+ VAIKKVLQDKR+KNRELQIMR L+H N+V L++ F+S+ E KDE+  NLV
Sbjct:   33 DGSKVTTVVATP--GQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLV 131          
BLAST of CK939394 vs. ExPASy Swiss-Prot
Match: GSK3A_MOUSE (Glycogen synthase kinase-3 alpha OS=Mus musculus GN=Gsk3a PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.552e-20
Identity = 55/102 (53.92%), Postives = 75/102 (73.53%), Query Frame = 2
Query:  512 GTEAGQV--IATTVGGRNGQPKQTISYMAERVVGTGSFGVVFQAKCLETGDSVAIKKVLQDKRYKNRELQIMRLLNHPNVVSLKHCFFSTTE-KDELXXNLV 808
            G ++G+V  +  TVG +  +  Q ++Y   +V+G GSFGVV+QA+  ET + VAIKKVLQDKR+KNRELQIMR L+H N+V L++ F+S+ E KDEL  NLV
Sbjct:   94 GRDSGKVTTVVATVG-QGPERSQEVAYTDIKVIGNGSFGVVYQARLAETRELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDELYLNLV 194          
BLAST of CK939394 vs. ExPASy Swiss-Prot
Match: GSK3B_SPECI (Glycogen synthase kinase-3 beta OS=Spermophilus citellus GN=GSK3B PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.354e-20
Identity = 53/101 (52.48%), Postives = 73/101 (72.28%), Query Frame = 2
Query:  509 NGTEAGQVIATTVGGRNGQPKQTISYMAERVVGTGSFGVVFQAKCLETGDSVAIKKVLQDKRYKNRELQIMRLLNHPNVVSLKHCFFSTTE-KDELXXNLV 808
            +G++   V+AT   G+     Q +SY   +V+G GSFGVV+QAK  ++G+ VAIKKVLQDKR+KNRELQIMR L+H N+V L++ F+S+ E KD +  NLV
Sbjct:   33 DGSKVTTVVATP--GQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDVVYLNLV 131          
BLAST of CK939394 vs. ExPASy Swiss-Prot
Match: GSK3A_RAT (Glycogen synthase kinase-3 alpha OS=Rattus norvegicus GN=Gsk3a PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.354e-20
Identity = 53/101 (52.48%), Postives = 72/101 (71.29%), Query Frame = 2
Query:  512 GTEAGQVIATTVG-GRNGQPKQTISYMAERVVGTGSFGVVFQAKCLETGDSVAIKKVLQDKRYKNRELQIMRLLNHPNVVSLKHCFFSTTE-KDELXXNLV 808
            G ++G+V       G+  +  Q ++Y   +V+G GSFGVV+QA+  ET + VAIKKVLQDKR+KNRELQIMR L+H N+V L++ F+S+ E KDEL  NLV
Sbjct:   94 GRDSGKVTTVVATLGQGPERSQEVAYTDIKVIGNGSFGVVYQARLAETRELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDELYLNLV 194          
BLAST of CK939394 vs. ExPASy Swiss-Prot
Match: GSK3A_HUMAN (Glycogen synthase kinase-3 alpha OS=Homo sapiens GN=GSK3A PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 4.354e-20
Identity = 53/101 (52.48%), Postives = 72/101 (71.29%), Query Frame = 2
Query:  512 GTEAGQVIATTVG-GRNGQPKQTISYMAERVVGTGSFGVVFQAKCLETGDSVAIKKVLQDKRYKNRELQIMRLLNHPNVVSLKHCFFSTTE-KDELXXNLV 808
            G ++G+V       G+  +  Q ++Y   +V+G GSFGVV+QA+  ET + VAIKKVLQDKR+KNRELQIMR L+H N+V L++ F+S+ E KDEL  NLV
Sbjct:   94 GRDSGKVTTVVATLGQGPERSQEVAYTDIKVIGNGSFGVVYQARLAETRELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDELYLNLV 194          
BLAST of CK939394 vs. ExPASy Swiss-Prot
Match: GSK3H_DROME (Putative glycogen synthase kinase-3 homolog OS=Drosophila melanogaster GN=gskt PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.267e-19
Identity = 54/94 (57.45%), Postives = 68/94 (72.34%), Query Frame = 2
Query:  530 VIATTVGGRNGQPKQTISYMAERVVGTGSFGVVFQAKCLETGDSVAIKKVLQDKRYKNRELQIMRLLNHPNVVSLKHCFFSTTEK-DELXXNLV 808
            V+AT   G +   +  ISY   +VVG GSFGVVFQAK + + + VAIKKVLQD+R+KNRELQIMR L H N+++LK  FFS+ EK DE+  NLV
Sbjct:   17 VVATNAFGADVMSE--ISYTDAKVVGNGSFGVVFQAKMVPSNEMVAIKKVLQDRRFKNRELQIMRKLRHDNIITLKWFFFSSGEKRDEVYLNLV 108          
BLAST of CK939394 vs. ExPASy Swiss-Prot
Match: GSK3_DICDI (Glycogen synthase kinase-3 OS=Dictyostelium discoideum GN=gskA PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 6.287e-19
Identity = 53/122 (43.44%), Postives = 76/122 (62.30%), Query Frame = 2
Query:  476 DKDLEPSIVNGNGTEAGQVIATTVGGRNGQPKQT-----------ISYMAERVVGTGSFGVVFQAKCLETGDSVAIKKVLQDKRYKNRELQIMRLLNHPNVVSLKHCFFSTTEKDELXXNLV 808
            +KD + +  NGN        +++    + +P+             + Y+ E V+G GSFGVV QA   +T + VAIKKVLQD+RYKNRELQIM++LNH N+VSLK+ F+ T++ DE+  NLV
Sbjct:    9 EKDKKETDDNGNKKTTTTTSSSSSSSSSSKPRSNKFDKVIIKSNGVCYITEGVIGNGSFGVVTQAIVADTKEVVAIKKVLQDQRYKNRELQIMKMLNHINIVSLKNSFY-TSDNDEVYLNLV 129          
BLAST of CK939394 vs. ExPASy Swiss-Prot
Match: GSK3_SCHPO (Protein kinase gsk3 OS=Schizosaccharomyces pombe GN=gsk3 PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 9.078e-18
Identity = 47/91 (51.65%), Postives = 64/91 (70.33%), Query Frame = 2
Query:  539 TTVGGRNGQPKQTISYMAERVVGTGSFGVVFQAKCLETGDSVAIKKVLQDKRYKNRELQIMRLLNHPNVVSLKHCFFSTTE-KDELXXNLV 808
            T   G  G+ KQ +SY + +VVG+GSFGVV Q   +E+    AIK+VLQDKR+KNRELQIMR++ HPN+V L   +++T +  DE+  NLV
Sbjct:   18 TARDGSTGEVKQ-LSYTSSKVVGSGSFGVVMQVHLIESDSKAAIKRVLQDKRFKNRELQIMRIMKHPNIVDLIAYYYTTGDNSDEVYLNLV 107          
BLAST of CK939394 vs. ExPASy Swiss-Prot
Match: MRK1_YEAST (Serine/threonine-protein kinase MRK1 OS=Saccharomyces cerevisiae GN=MRK1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.022e-17
Identity = 47/90 (52.22%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  539 TTVGGRNGQPKQTISYMAERVVGTGSFGVVFQAKCLETGDSVAIKKVLQDKRYKNRELQIMRLLNHPNVVSLKHCFFSTTEKDELXXNLV 808
            T V  +N      ISY    VVG GSFGVV     +ET   VAIKKVLQD+RYKNREL+ M++L HPN V L++ F+   E+DE+  NLV
Sbjct:  149 TDVDRKNHGGTIDISYPTTEVVGHGSFGVVVTTVIIETNQKVAIKKVLQDRRYKNRELETMKMLCHPNTVGLQYYFYEKDEEDEVYLNLV 238          
BLAST of CK939394 vs. ExPASy Swiss-Prot
Match: MDS1_YEAST (Serine/threonine-protein kinase MDS1/RIM11 OS=Saccharomyces cerevisiae GN=MDS1 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.450e-17
Identity = 42/77 (54.55%), Postives = 56/77 (72.73%), Query Frame = 2
Query:  578 ISYMAERVVGTGSFGVVFQAKCLETGDSVAIKKVLQDKRYKNRELQIMRLLNHPNVVSLKHCFFSTTEKDELXXNLV 808
            IS+    VVG GSFGVVF     ET + VAIKKVLQDKR+KNREL+IM++L+H N++ LK+ F+    +DE+  NL+
Sbjct:   37 ISFPTTEVVGHGSFGVVFATVIQETNEKVAIKKVLQDKRFKNRELEIMKMLSHINIIDLKYFFYERDSQDEIYLNLI 113          
The following BLAST results are available for this feature:
BLAST of CK939394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
GSK3B_HUMAN6.717e-2153.47Glycogen synthase kinase-3 beta OS=Homo sapiens GN... [more]
GSK3A_MOUSE2.552e-2053.92Glycogen synthase kinase-3 alpha OS=Mus musculus G... [more]
GSK3B_SPECI4.354e-2052.48Glycogen synthase kinase-3 beta OS=Spermophilus ci... [more]
GSK3A_RAT4.354e-2052.48Glycogen synthase kinase-3 alpha OS=Rattus norvegi... [more]
GSK3A_HUMAN4.354e-2052.48Glycogen synthase kinase-3 alpha OS=Homo sapiens G... [more]
GSK3H_DROME1.267e-1957.45Putative glycogen synthase kinase-3 homolog OS=Dro... [more]
GSK3_DICDI6.287e-1943.44Glycogen synthase kinase-3 OS=Dictyostelium discoi... [more]
GSK3_SCHPO9.078e-1851.65Protein kinase gsk3 OS=Schizosaccharomyces pombe G... [more]
MRK1_YEAST2.022e-1752.22Serine/threonine-protein kinase MRK1 OS=Saccharomy... [more]
MDS1_YEAST3.450e-1754.55Serine/threonine-protein kinase MDS1/RIM11 OS=Sacc... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_B03 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939394 ID=CK939394; Name=CK939394; organism=Citrus sinensis; type=EST; length=809bp
GGGGGTGTTTGTATTTTCTGTTTTTTAATTTCCTTTTGGGTCGCCGAGGA
AGAGAGAGAAATTCTCTCTCTCCTTTTGAAGCAATACCGTTCTTTTGAAT
TTGGCGTTGGATTTGTTCATTCTTTCATTTTTGAAGTGGAGAATCAATTA
GGGTTTCGTTTTCAGAAACAATGAATGTCATGCGCCGTCTCAAGAGCATT
GCTTCTGGTCGCACTTCTATTTCTTCTGATCCGGGTGGAGATTCTGGCAT
AAAGAGGGCAAAGGTCGATAAAGAATTAGAGGTAAATGGGGAAGCAAATT
TGGTTGAAAGAAGTGCCTCCAGTCTAGAGCAGCATATGGCTTCTACATCT
CTGGAGCCTGTTGCAAGCACGTCCGAAGCAGCCACAGTTGCTAGAACTGA
AAGATCAGGTTTTGATCAACTGCCTAAGGAAATGAATGAGATGAGAATAA
GAGATGAAAAAATGTTAACCATGATGATAAGGATTTGGAACCCTCAATTG
TCAATGGCAATGGAACAGAAGCAGGTCAAGTCATTGCTACTACAGTAGGT
GGTCGAAATGGACAACCAAAGCAGACAATCTCCTATATGGCAGAACGTGT
GGTGGGGACTGGTTCCTTTGGTGTTGTCTTCCAAGCTAAGTGCCTTGAAA
CAGGGGACTCTGTTGCAATAAAGAAGGTGCTCCAGGATAAGAGATACAAG
AATAGGGAACTCCAAATTATGCGTTTACTTAACCATCCTAATGTTGTTTC
TCTGAAACATTGTTTCTTTTCAACTACTGAGAAAGATGAGCTTTNNNTTA
ACCTTGTCT
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