CK939393

Overview
NameCK939393
Unique NameCK939393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939393 vs. ExPASy Swiss-Prot
Match: PSAL_PROMA (Photosystem I reaction center subunit XI OS=Prochlorococcus marinus GN=psaL PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.198e-15
Identity = 52/155 (33.55%), Postives = 73/155 (47.10%), Query Frame = 1
Query:  262 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTG--RKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNL 720
            + P++ DP +G+L TP+ S      +L+NLP YR  +SP  RG+EVG A G+LL GP+   GPLRNT+             V IL+  L +Y         P  AP +  +       P  L T  GWA            G ++A+ L   L+L
Sbjct:   39 VTPVS-DPCVGNLSTPVNSGYFTKAFLNNLPFYRGGLSPNFRGLEVGAAFGYLLYGPYAMTGPLRNTDYALTAGLLGTIGAVHILTALLVLY-------NAPGKAPNIQPSDCTINNPPADLFTRSGWADFTSGFWLGGCGGAVFAWLLCGTLHL 185          
BLAST of CK939393 vs. ExPASy Swiss-Prot
Match: PSAL_PROMS (Photosystem I reaction center subunit XI OS=Prochlorococcus marinus (strain AS9601) GN=psaL PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.487e-15
Identity = 50/149 (33.56%), Postives = 68/149 (45.64%), Query Frame = 1
Query:  280 DPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGR--KKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNL 720
            DP +G+L TP+ S      +++NLP YR  +SP  RG+E G A G+LL GPF   GPLRN+E             V IL+  L +Y         P  AP +          P  L T  GWA            G ++A+ L+  L+L
Sbjct:   44 DPCVGNLATPVNSGYFTKAFINNLPFYREGISPNFRGLETGAAFGYLLYGPFTMTGPLRNSEFALTAGLLAAIGAVHILTALLVLY-------NAPGKAPNVQPPDATVNNPPKDLFTRAGWADFTSGFWLGGCGGSVFAWLLVGTLHL 185          
BLAST of CK939393 vs. ExPASy Swiss-Prot
Match: PSAL_PROM2 (Photosystem I reaction center subunit XI OS=Prochlorococcus marinus (strain MIT 9215) GN=psaL PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.487e-15
Identity = 49/149 (32.89%), Postives = 68/149 (45.64%), Query Frame = 1
Query:  280 DPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGR--KKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNL 720
            DP +G+L TP+ S      +++NLP YR  +SP  RG+E G A G+LL GPF   GPLRN+E             V I++  L +Y         P  AP +          P  L T  GWA            G ++A+ L+  L+L
Sbjct:   44 DPCVGNLATPVNSGYFTKAFINNLPFYREGISPNFRGLETGAAFGYLLYGPFTMTGPLRNSEFAVTAGLLSAIGAVHIMTALLVLY-------NAPGKAPNVQPPDATVNNPPKDLFTRAGWADFTSGFWLGGCGGAVFAWLLVGTLHL 185          
BLAST of CK939393 vs. ExPASy Swiss-Prot
Match: PSAL_PROM0 (Photosystem I reaction center subunit XI OS=Prochlorococcus marinus (strain MIT 9301) GN=psaL PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.947e-15
Identity = 49/149 (32.89%), Postives = 67/149 (44.97%), Query Frame = 1
Query:  280 DPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGR--KKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNL 720
            DP +G+L TP+ S      +++NLP YR  +SP  RG+E G A G+LL GPF   GPLRN+E             V IL+    +Y         P  AP +          P  L T  GWA            G ++A+ L+  L+L
Sbjct:   44 DPCVGNLATPVNSGYFTKAFINNLPFYREGISPNFRGLETGAAFGYLLYGPFTMTGPLRNSEFALTAGLLATIGAVHILTALFVLY-------NAPGKAPNVQPPDATVNNPPKDLFTRAGWADFTSGFWLGGCGGAVFAWLLVGTLHL 185          
BLAST of CK939393 vs. ExPASy Swiss-Prot
Match: PSAL_PROMP (Photosystem I reaction center subunit XI OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=psaL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.014e-14
Identity = 50/155 (32.26%), Postives = 73/155 (47.10%), Query Frame = 1
Query:  262 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRK--KEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNL 720
            ++P++ DP +G+L TP+ S      +++NLP YR  +SP  RG+E G A G+LL GPF   GPLRN++             V IL+  L +Y         P  AP +          P  L T  GWA            G ++A+ L+  L+L
Sbjct:   39 VKPVS-DPCVGNLATPVNSGYFTKAFINNLPFYREGISPNFRGLETGAAFGYLLYGPFSMTGPLRNSDFALTAGLLATIGAVHILTGLLVLY-------NAPGKAPNVQPPDATVYNPPADLFTRTGWADFTSGFWLGGCGGAVFAWLLVGTLHL 185          
BLAST of CK939393 vs. ExPASy Swiss-Prot
Match: PSAL_PROM5 (Photosystem I reaction center subunit XI OS=Prochlorococcus marinus (strain MIT 9515) GN=psaL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.014e-14
Identity = 48/149 (32.21%), Postives = 68/149 (45.64%), Query Frame = 1
Query:  280 DPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGR--KKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNL 720
            DP +G+L TP+ S      +++NLP YR  +SP  RG+E G A G+LL GPF   GPLRN++             V I++  L +Y         P  AP +          P  L T  GWA            G ++A+ L+  L+L
Sbjct:   44 DPCVGNLATPVNSGYFTKAFINNLPFYREGISPNFRGLETGAAFGYLLYGPFTMTGPLRNSDFAITAGLLAAIGAVHIMTALLVLY-------NAPGKAPNVQPPDATVNNPPADLFTRAGWADFTSGFWLGGCGGAVFAWLLVGTLHL 185          
BLAST of CK939393 vs. ExPASy Swiss-Prot
Match: PSAL_GLOVI (Photosystem I reaction center subunit XI OS=Gloeobacter violaceus GN=psaL PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.855e-14
Identity = 48/142 (33.80%), Postives = 70/142 (49.30%), Query Frame = 1
Query:  280 DPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLL 705
            DP  G+L TP+ +S  I W++ NLP  R  +    RG+E+G+AHG+ L+GPF   GPLRNTE+            ++I +I L+  G AS  E  P      T   RK          GW++         + G I+A+ +L
Sbjct:   11 DPQEGTLLTPVNNSTAIRWFIDNLPINRVGMDEFTRGLEIGMAHGYWLIGPFALLGPLRNTELGLVAGLVSTIGLLLISTIGLS--GYASLVEDVP------TEFDRK----------GWSRLAGGFLVGGVGGAIFAFAIL 134          
The following BLAST results are available for this feature:
BLAST of CK939393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PSAL_PROMA1.198e-1533.55Photosystem I reaction center subunit XI OS=Prochl... [more]
PSAL_PROMS3.487e-1533.56Photosystem I reaction center subunit XI OS=Prochl... [more]
PSAL_PROM23.487e-1532.89Photosystem I reaction center subunit XI OS=Prochl... [more]
PSAL_PROM05.947e-1532.89Photosystem I reaction center subunit XI OS=Prochl... [more]
PSAL_PROMP1.014e-1432.26Photosystem I reaction center subunit XI OS=Prochl... [more]
PSAL_PROM51.014e-1432.21Photosystem I reaction center subunit XI OS=Prochl... [more]
PSAL_GLOVI3.855e-1433.80Photosystem I reaction center subunit XI OS=Gloeob... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_C08 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939393 ID=CK939393; Name=CK939393; organism=Citrus sinensis; type=EST; length=850bp
GGGGGGGAGCTTTTACTTGCATATCTATACAAAGCAGAGCTCTTGGTAGA
AACAGAAGTCTTTTAACAAACACAATCTCAAATGGCTTCTGTTTCTTCTC
CAATGGCCAGCCAGCTCAAGAGTAGCTTTACTTCACCAGTTTCCAGGAGC
CTGCTTACTCCAAGGGGTATCTCTGGATCTCCATTCAGGGTTGTTCCCTC
CAAGAGAAGCCCTCGTTTCCTTGTCAAAGCTATCCAATCTGAAAAGCCAA
CTTACCAAGTTATTCAGCCAATCAATGGTGATCCATTCATTGGAAGCTTG
GAGACTCCAATTACATCAAGTCCATTGATTGCATGGTACCTCTCAAATCT
ACCAGCTTATCGGACGGCAGTCAGCCCACTACTGAGAGGAGTAGAGGTGG
GGTTGGCCCATGGATTCCTCCTTGTGGGTCCATTTGTTAAGGCAGGGCCA
TTGAGAAACACAGAAATAGCAGGACCAGCAGGGTCATTGGCAGCTGGTGG
CCTTGTTGTGATCCTCAGCATTTGCTTGACAATCTATGGAATTGCTTCAT
TCAGTGAAGGAGAGCCATCCACTGCTCCAGGCTTAACATTGACCGGAAGG
AAGAAGGAGCCTGATCAGTTGCAAACAGCTGATGGGTGGGCTAAGTTCAC
TGGAGGATTCTTCTTTGGTGGAATTTCTGGTGTCATTTGGGCTTATTTCC
TGCTTTACGTTCTTAACCTTCCCTACTTCGTTAAATAGAAATATGTAACA
TCTACTCTTTGGTTTTAAGATCCCATGTATCTCAATTTGCTACTCTGTAA
ATCTACCTGTTTGGGATGTTTAAAAAAAAAANNNNAAAAAAAAAAAAAAA
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