CK939384

Overview
NameCK939384
Unique NameCK939384
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939384 vs. ExPASy Swiss-Prot
Match: POTA_LEGPA (Spermidine/putrescine import ATP-binding protein potA OS=Legionella pneumophila (strain Paris) GN=potA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 30/63 (47.62%), Postives = 45/63 (71.43%), Query Frame = 1
Query:  433 LIECRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR 621
            LIE R +YKS+G   IL  VS  + HGE + ++GPSG GK+T+L++I+G   P +GE++I G+
Sbjct:    5 LIEIRQIYKSYGNTPILNNVSLNVNHGEFLTLLGPSGCGKTTLLRLISGFEQPTQGEIFINGQ 67          
BLAST of CK939384 vs. ExPASy Swiss-Prot
Match: POTA_HAEIN (Spermidine/putrescine import ATP-binding protein potA OS=Haemophilus influenzae GN=potA PE=3 SV=2)

HSP 1 Score: 57.7658 bits (138), Expect = 1.105e-11
Identity = 26/62 (41.94%), Postives = 41/62 (66.13%), Query Frame = 1
Query:  433 LIECRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 618
            +IE R++ KS+G   I+   +  I +GE V I+GPSG GK+T+L+++AGL   D G + + G
Sbjct:   10 IIELRSIKKSYGSNTIINDFNLTINNGEFVTILGPSGCGKTTVLRLLAGLEELDSGSIILDG 71          

HSP 2 Score: 33.113 bits (74), Expect = 1.105e-11
Identity = 19/45 (42.22%), Postives = 27/45 (60.00%), Query Frame = 2
Query:  656 LVFGLDWYENSKMPDEQISELVKENLAAVGLKGVEDRLPSELSGG 790
            + FGL      K+P+E+I   V E L  V L+ + DR P++LSGG
Sbjct:  103 VAFGL---RMQKVPNEEIKPRVLEALRMVQLEEMADRKPTQLSGG 144          
BLAST of CK939384 vs. ExPASy Swiss-Prot
Match: POTA_LISMO (Spermidine/putrescine import ATP-binding protein potA OS=Listeria monocytogenes GN=potA PE=3 SV=2)

HSP 1 Score: 55.8398 bits (133), Expect = 1.106e-11
Identity = 27/63 (42.86%), Postives = 41/63 (65.08%), Query Frame = 1
Query:  427 DVLIECRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 612
            + +I   NV K F  +  +L  VSF+I  G+   ++GPSG GK+TIL++IAG L   KG++Y+
Sbjct:    5 ETIIRFENVTKQFDNDPPVLDNVSFEIEKGKFYTLLGPSGCGKTTILRLIAGFLEASKGQIYL 67          

HSP 2 Score: 35.039 bits (79), Expect = 1.106e-11
Identity = 23/48 (47.92%), Postives = 26/48 (54.17%), Query Frame = 2
Query:  668 LDWYEN-------SKMPDEQISELVKENLAAVGLKGVEDRLPSELSGG 790
            L+ YEN        K+  E I E VKE L  V LKG E R  SE+SGG
Sbjct:   95 LNVYENVAFGLRIKKLKKEAIDEKVKEALRFVNLKGYEKREISEMSGG 142          
BLAST of CK939384 vs. ExPASy Swiss-Prot
Match: CYSA_LEPIN (Sulfate/thiosulfate import ATP-binding protein cysA OS=Leptospira interrogans GN=cysA PE=3 SV=2)

HSP 1 Score: 60.8474 bits (146), Expect = 1.107e-11
Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = 1
Query:  436 IECRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 624
            IE +N+ K FG    +  +S  +  GE V ++GPSG+GK+T+L+IIAGL   DKG+V   GR+
Sbjct:    3 IEVKNLVKRFGNFTAIDDLSLDVPSGELVALLGPSGSGKTTLLRIIAGLEDADKGQVIFEGRE 65          

HSP 2 Score: 30.0314 bits (66), Expect = 1.107e-11
Identity = 18/46 (39.13%), Postives = 26/46 (56.52%), Query Frame = 2
Query:  656 LVFGLDWYENSKMPDEQ-ISELVKENLAAVGLKGVEDRLPSELSGG 790
            + FGL+  + S+ P +  I + V   L  V L+   +R PSELSGG
Sbjct:   95 IAFGLEVRKRSERPSKDTIRDKVMSLLKLVQLENFYNRYPSELSGG 140          
BLAST of CK939384 vs. ExPASy Swiss-Prot
Match: CYSA_LEPIC (Sulfate/thiosulfate import ATP-binding protein cysA OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=cysA PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.107e-11
Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = 1
Query:  436 IECRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 624
            IE +N+ K FG    +  +S  +  GE V ++GPSG+GK+T+L+IIAGL   DKG+V   GR+
Sbjct:    3 IEVKNLVKRFGNFTAIDDLSLDVPSGELVALLGPSGSGKTTLLRIIAGLEDADKGQVIFEGRE 65          

HSP 2 Score: 30.0314 bits (66), Expect = 1.107e-11
Identity = 18/46 (39.13%), Postives = 26/46 (56.52%), Query Frame = 2
Query:  656 LVFGLDWYENSKMPDEQ-ISELVKENLAAVGLKGVEDRLPSELSGG 790
            + FGL+  + S+ P +  I + V   L  V L+   +R PSELSGG
Sbjct:   95 IAFGLEVRKRSERPSKDTIRDKVMSLLKLVQLENFYNRYPSELSGG 140          
BLAST of CK939384 vs. ExPASy Swiss-Prot
Match: CYSA_ACIAD (Sulfate/thiosulfate import ATP-binding protein cysA OS=Acinetobacter sp. (strain ADP1) GN=cysA PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 1.866e-11
Identity = 26/61 (42.62%), Postives = 42/61 (68.85%), Query Frame = 1
Query:  436 IECRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 618
            I+ +N+ K FG  H L+ +S     G+ V ++GPSG GK+T+L+IIAGL + D+G++ + G
Sbjct:    3 IQVKNIEKHFGAFHALKNISLDFPEGQLVALLGPSGCGKTTLLRIIAGLESADEGKILLEG 63          

HSP 2 Score: 28.4906 bits (62), Expect = 1.866e-11
Identity = 19/46 (41.30%), Postives = 24/46 (52.17%), Query Frame = 2
Query:  656 LVFGLDWYENSKMPDE-QISELVKENLAAVGLKGVEDRLPSELSGG 790
            + FGL     S  P E +I + V   L  V L  + DR PS+LSGG
Sbjct:   95 IAFGLRVRPRSTRPSEAEIKKRVTRLLDLVQLGFLADRYPSQLSGG 140          
BLAST of CK939384 vs. ExPASy Swiss-Prot
Match: SSUB1_NOCFA (Aliphatic sulfonates import ATP-binding protein ssuB 1 OS=Nocardia farcinica GN=ssuB1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.081e-11
Identity = 31/65 (47.69%), Postives = 45/65 (69.23%), Query Frame = 1
Query:  430 VLIECRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 624
            + +    + KSFG+K +L GV   IR GE V ++GPSGTGK+T+L+++ GL  PD GEV + GR+
Sbjct:    6 IAVSITGLRKSFGDKTVLDGVDLTIRRGEFVVLLGPSGTGKTTLLRLLTGLEVPDAGEVLVPGRR 70          
BLAST of CK939384 vs. ExPASy Swiss-Prot
Match: POTA_LEGPL (Spermidine/putrescine import ATP-binding protein potA OS=Legionella pneumophila (strain Lens) GN=potA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.081e-11
Identity = 30/63 (47.62%), Postives = 44/63 (69.84%), Query Frame = 1
Query:  433 LIECRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR 621
            LIE R +YKS+G   IL  VS  + HGE + ++GPSG GK+T+L++I+G   P  GE++I G+
Sbjct:    5 LIEIRQIYKSYGNTPILNNVSLNVNHGEFLTLLGPSGCGKTTLLRLISGFEQPTLGEIFINGQ 67          
BLAST of CK939384 vs. ExPASy Swiss-Prot
Match: POTA_MESFL (Spermidine/putrescine import ATP-binding protein potA OS=Mesoplasma florum GN=potA PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 2.423e-11
Identity = 25/63 (39.68%), Postives = 42/63 (66.67%), Query Frame = 1
Query:  433 LIECRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR 621
            ++E RNV K +  K +L+G+   I+ GE + ++GPSG GK+T L+I+AG   P+ G++   G+
Sbjct:    5 ILELRNVTKDYDGKVVLKGIDLNIKEGEFITLLGPSGCGKTTTLRIVAGFEKPNSGQIMFEGK 67          

HSP 2 Score: 27.7202 bits (60), Expect = 2.423e-11
Identity = 16/45 (35.56%), Postives = 24/45 (53.33%), Query Frame = 2
Query:  656 LVFGLDWYENSKMPDEQISELVKENLAAVGLKGVEDRLPSELSGG 790
            + FGL      K   + +   V + +  VGL+G EDR  ++LSGG
Sbjct:   98 IAFGL---RTKKTKKDILQREVLKQIRQVGLEGFEDRNINDLSGG 139          
BLAST of CK939384 vs. ExPASy Swiss-Prot
Match: POTA_ANASP (Spermidine/putrescine import ATP-binding protein potA OS=Anabaena sp. (strain PCC 7120) GN=potA PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 3.136e-11
Identity = 27/62 (43.55%), Postives = 41/62 (66.13%), Query Frame = 1
Query:  436 IECRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR 621
            +E RNV+K F ++  + GV   +R GE   I+GPSG GK+T L++IAG    D G++ I+G+
Sbjct:   22 VELRNVFKFFNQEPAVHGVDLDVRQGEFFSILGPSGCGKTTTLRLIAGFEQVDAGKLLIQGQ 83          

HSP 2 Score: 29.261 bits (64), Expect = 3.136e-11
Identity = 16/45 (35.56%), Postives = 25/45 (55.56%), Query Frame = 2
Query:  656 LVFGLDWYENSKMPDEQISELVKENLAAVGLKGVEDRLPSELSGG 790
            + FGL   ++ K    ++   VKE L  V ++ +  R PS+LSGG
Sbjct:  114 VAFGLRLKKSRK---SEVESRVKEALKLVKMESLRSRFPSQLSGG 155          
The following BLAST results are available for this feature:
BLAST of CK939384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
POTA_LEGPA9.343e-1247.62Spermidine/putrescine import ATP-binding protein p... [more]
POTA_HAEIN1.105e-1141.94Spermidine/putrescine import ATP-binding protein p... [more]
POTA_LISMO1.106e-1142.86Spermidine/putrescine import ATP-binding protein p... [more]
CYSA_LEPIN1.107e-1146.03Sulfate/thiosulfate import ATP-binding protein cys... [more]
CYSA_LEPIC1.107e-1146.03Sulfate/thiosulfate import ATP-binding protein cys... [more]
CYSA_ACIAD1.866e-1142.62Sulfate/thiosulfate import ATP-binding protein cys... [more]
SSUB1_NOCFA2.081e-1147.69Aliphatic sulfonates import ATP-binding protein ss... [more]
POTA_LEGPL2.081e-1147.62Spermidine/putrescine import ATP-binding protein p... [more]
POTA_MESFL2.423e-1139.68Spermidine/putrescine import ATP-binding protein p... [more]
POTA_ANASP3.136e-1143.55Spermidine/putrescine import ATP-binding protein p... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004751_D03 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939384 ID=CK939384; Name=CK939384; organism=Citrus sinensis; type=EST; length=791bp
GGGGAAATCACAAAATTATCAAAACCCAGTAGTTGAAATGCTTCGAAAAC
CACTTTTTATGTGAACTTCCATTGATTATTCTATTTTATTTTATTTTTTT
CATTTTGTGGTTTTTAGACCAAATATCAATCTGCGTCTGCTTTACAATTA
TAAACACCGAAAATGGTCTCTTTATCTTCATCTGGTTCACTGTTATTTCC
TCTCGCAACAAAAAGTGTTAGTTCTCGATTGTCTACACTTGCTAATTCGG
GCAAAAAGCCGATCAATTCGTTCTATTATAAGGCGAAAGAAGAACAGAGA
AAAGTCGTTTGTGCTTGTGTAGCGCCTCCAAGGGACTTGGGCACTGATGG
ATTCCCTGCCACCAAATTCAATGATTCATCTAAATCAGAGAATGTTAATA
CCTTATTCGAACCCGAGGATGATGGTGATGTTCTCATCGAGTGTCGGAAT
GTTTACAAGTCATTTGGGGAAAAGCATATATTGAGAGGTGTGAGCTTCAA
GATTAGACATGGTGAAGCTGTTGGTATAATAGGGCCTTCAGGCACTGGGA
AATCAACGATTTTAAAGATTATTGCTGGGCTTCTTGCTCCAGACAAGGGA
GAGGTTTACATTCGAGGTAGGAAGAGAGCTGGTTTGATTAGCGATGAGGA
GATATCTGGTCTTCGGATTGGATTGGTATGAAAATTCGAAGATGCCTGAT
GAACAAATTTCAGAGCTTGTGAAGGAAAATTTGGCTGCCGTTGGATTAAA
GGGAGTTGAGGATCGCTTACCATCTGAGTTGTCTGGTGGAA
back to top