CK939384

Overview
NameCK939384
Unique NameCK939384
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939384 vs. ExPASy Swiss-Prot
Match: POTA_MYCMS (Spermidine/putrescine import ATP-binding protein potA OS=Mycoplasma mycoides subsp. mycoides SC GN=potA PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 3.145e-11
Identity = 27/58 (46.55%), Postives = 42/58 (72.41%), Query Frame = 1
Query:  433 LIECRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 606
            ++E RNV K +  + +L+G+SF ++ GE + ++GPSG GK+TILKII G   P+ GE+
Sbjct:    5 ILELRNVTKEYDGQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEI 62          

HSP 2 Score: 25.409 bits (54), Expect = 3.145e-11
Identity = 16/45 (35.56%), Postives = 23/45 (51.11%), Query Frame = 2
Query:  656 LVFGLDWYENSKMPDEQISELVKENLAAVGLKGVEDRLPSELSGG 790
            + FGL   +  K   + I   V   +  VGL+G E++   ELSGG
Sbjct:   98 VAFGLTIKKTKK---DIIEREVMRQIRQVGLEGYENKKIDELSGG 139          
BLAST of CK939384 vs. ExPASy Swiss-Prot
Match: POTA_MYCCT (Spermidine/putrescine import ATP-binding protein potA OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=potA PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 3.145e-11
Identity = 27/58 (46.55%), Postives = 42/58 (72.41%), Query Frame = 1
Query:  433 LIECRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 606
            ++E RNV K +  + +L+G+SF ++ GE + ++GPSG GK+TILKII G   P+ GE+
Sbjct:    5 ILELRNVTKEYDGQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEI 62          

HSP 2 Score: 25.409 bits (54), Expect = 3.145e-11
Identity = 16/45 (35.56%), Postives = 23/45 (51.11%), Query Frame = 2
Query:  656 LVFGLDWYENSKMPDEQISELVKENLAAVGLKGVEDRLPSELSGG 790
            + FGL   +  K   + I   V   +  VGL+G E++   ELSGG
Sbjct:   98 VAFGLTIKKTKK---DIIEREVMRQIRQVGLEGYENKKIDELSGG 139          
BLAST of CK939384 vs. ExPASy Swiss-Prot
Match: FBPC_PHOPR (Fe(3+) ions import ATP-binding protein fbpC OS=Photobacterium profundum GN=fbpC PE=3 SV=2)

HSP 1 Score: 60.4622 bits (145), Expect = 3.145e-11
Identity = 24/66 (36.36%), Postives = 43/66 (65.15%), Query Frame = 1
Query:  421 DGDVLIECRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 618
            + D  +  +NV K FG+  ++  +  +I+ G  V ++GPSG GK+T+L+++AGL  P  G+++I G
Sbjct:    2 ENDNFVVLKNVCKRFGDNTVINNLDLEIKKGSLVTLLGPSGCGKTTVLRLVAGLEKPTSGQIFIDG 67          

HSP 2 Score: 28.8758 bits (63), Expect = 3.145e-11
Identity = 13/34 (38.24%), Postives = 20/34 (58.82%), Query Frame = 2
Query:  689 KMPDEQISELVKENLAAVGLKGVEDRLPSELSGG 790
            K+P  +I + V + L  V L G+ DR   ++SGG
Sbjct:  107 KLPAAEIKQRVDDALKLVDLSGMGDRFVDQISGG 140          
BLAST of CK939384 vs. ExPASy Swiss-Prot
Match: Y731_ARCFU (Putative ABC transporter ATP-binding protein AF_0731 OS=Archaeoglobus fulgidus GN=AF_0731 PE=3 SV=2)

HSP 1 Score: 56.225 bits (134), Expect = 3.165e-11
Identity = 25/64 (39.06%), Postives = 43/64 (67.19%), Query Frame = 1
Query:  433 LIECRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 624
            +IE  +++  +G+  +L+GV+FK   G+   ++G +G GK+T+LK + GLL P  G+V I GR+
Sbjct:    1 MIEAVDLHFCYGDAEVLKGVNFKAERGKVTVLMGRNGAGKTTLLKHLNGLLRPKSGKVIIDGRE 64          

HSP 2 Score: 33.113 bits (74), Expect = 3.165e-11
Identity = 17/36 (47.22%), Postives = 22/36 (61.11%), Query Frame = 2
Query:  683 NSKMPDEQISELVKENLAAVGLKGVEDRLPSELSGG 790
            N  +  E++  +V+  L AVGL G E RL S LSGG
Sbjct:  105 NLGLKGERLERVVRNALEAVGLSGYEKRLCSTLSGG 140          
BLAST of CK939384 vs. ExPASy Swiss-Prot
Match: POTA_HAEDU (Spermidine/putrescine import ATP-binding protein potA OS=Haemophilus ducreyi GN=potA PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 4.075e-11
Identity = 27/63 (42.86%), Postives = 43/63 (68.25%), Query Frame = 1
Query:  433 LIECRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR 621
            ++E RNV KS+G+K IL+ ++  I  GE + I+GPSG GK+T L++IAG     +G + + G+
Sbjct:    9 IVELRNVTKSYGDKTILKDLNLTINDGEFLTILGPSGCGKTTALRLIAGFEDLTEGSIILDGQ 71          

HSP 2 Score: 30.8018 bits (68), Expect = 4.075e-11
Identity = 18/45 (40.00%), Postives = 27/45 (60.00%), Query Frame = 2
Query:  656 LVFGLDWYENSKMPDEQISELVKENLAAVGLKGVEDRLPSELSGG 790
            + FGL      K+P+EQI+  V E L  V L+   ++ P++LSGG
Sbjct:  102 VAFGL---RMQKVPNEQITPRVMEALRMVRLEDRAEQKPAQLSGG 143          
BLAST of CK939384 vs. ExPASy Swiss-Prot
Match: POTA_ENTFA (Spermidine/putrescine import ATP-binding protein potA OS=Enterococcus faecalis GN=potA PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 4.079e-11
Identity = 28/64 (43.75%), Postives = 42/64 (65.62%), Query Frame = 1
Query:  433 LIECRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 624
            +I   NV K F ++ +L+ VSF+I  G+   ++GPSG GK+TIL+IIAG      G+VY  G++
Sbjct:    5 VISFENVVKQFDDEPVLKNVSFEIEEGKFYTLLGPSGCGKTTILRIIAGFNDVTSGDVYFDGKR 68          

HSP 2 Score: 29.261 bits (64), Expect = 4.079e-11
Identity = 19/45 (42.22%), Postives = 25/45 (55.56%), Query Frame = 2
Query:  656 LVFGLDWYENSKMPDEQISELVKENLAAVGLKGVEDRLPSELSGG 790
            + FGL   +  K+   +I + VKE L  V L G E R  SE+SGG
Sbjct:   98 VAFGL---KIKKLSKAEIEKKVKEALRLVQLPGYETREISEMSGG 139          
BLAST of CK939384 vs. ExPASy Swiss-Prot
Match: CYSA_NOCFA (Sulfate/thiosulfate import ATP-binding protein cysA OS=Nocardia farcinica GN=cysA PE=3 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 4.091e-11
Identity = 28/63 (44.44%), Postives = 39/63 (61.90%), Query Frame = 1
Query:  433 LIECRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR 621
            +I   N  K++G    L  V+ +I  GE   ++GPSG+GKST+L+ IAGL A D G V I G+
Sbjct:    1 MITVTNARKNYGNFAALDDVTIEIPSGELTALLGPSGSGKSTLLRSIAGLEALDDGVVVIAGK 63          

HSP 2 Score: 35.4242 bits (80), Expect = 4.091e-11
Identity = 20/51 (39.22%), Postives = 30/51 (58.82%), Query Frame = 2
Query:  638 LAMRRYLVFGLDWYENSKMPDEQISELVKENLAAVGLKGVEDRLPSELSGG 790
            + +R  + FGL   +  K P  +I++ V E L  VGL G + R P++LSGG
Sbjct:   88 MTVRDNVAFGL---KIRKRPKAEITKRVDELLGIVGLDGFQHRYPAQLSGG 135          
BLAST of CK939384 vs. ExPASy Swiss-Prot
Match: NODI1_RHIME (Nod factor export ATP-binding protein I OS=Rhizobium meliloti GN=nodI PE=3 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 4.637e-11
Identity = 33/88 (37.50%), Postives = 57/88 (64.77%), Query Frame = 1
Query:  430 VLIECRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLV*KFED 693
            V I+  +V KS+G+K ++ G+SF +  GE  G++GP+G GKSTI ++I G+  P  GE+ + G     + S   ++ +RIG+V +F++
Sbjct:   35 VAIDVASVTKSYGDKPVINGLSFTVAAGECFGLLGPNGAGKSTITRMILGMTTPGTGEITVLG---VPVPSRARLARMRIGVVPQFDN 119          
BLAST of CK939384 vs. ExPASy Swiss-Prot
Match: POTA_AGGAC (Spermidine/putrescine import ATP-binding protein potA OS=Aggregatibacter actinomycetemcomitans GN=potA PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 5.289e-11
Identity = 25/62 (40.32%), Postives = 42/62 (67.74%), Query Frame = 1
Query:  433 LIECRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 618
            +IE R++ KS+G   I++  +  I +GE + I+GPSG GK+T+L+++AGL   D G + + G
Sbjct:   10 IIELRSITKSYGSNTIIKDFNLTINNGEFLTILGPSGCGKTTVLRLLAGLEELDSGNIILDG 71          

HSP 2 Score: 31.187 bits (69), Expect = 5.289e-11
Identity = 18/45 (40.00%), Postives = 26/45 (57.78%), Query Frame = 2
Query:  656 LVFGLDWYENSKMPDEQISELVKENLAAVGLKGVEDRLPSELSGG 790
            + FGL      K+P+ +I   V E L  V L+ + DR P++LSGG
Sbjct:  103 VAFGL---RMQKVPEAEIKPRVLEALRMVQLEEMADRKPTQLSGG 144          
BLAST of CK939384 vs. ExPASy Swiss-Prot
Match: CBIO2_STRT2 (Cobalt import ATP-binding protein cbiO 2 OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=cbiO2 PE=3 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 5.347e-11
Identity = 30/87 (34.48%), Postives = 53/87 (60.92%), Query Frame = 1
Query:  433 LIECRNV---YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR--IGLV 678
            +IE +N+   Y      + L  VSF ++HGE + I+G +G+GKST  ++I GLL  D G++ + G++    +++E +  +R  IG+V
Sbjct:    1 MIEIKNLKFKYNQDQTSYTLNDVSFHVKHGEWLSIVGHNGSGKSTTARLIGGLLVADSGQIIVDGQE----LTEETVWDIRDKIGMV 83          

HSP 2 Score: 33.4982 bits (75), Expect = 5.347e-11
Identity = 18/45 (40.00%), Postives = 28/45 (62.22%), Query Frame = 2
Query:  656 LVFGLDWYENSKMPDEQISELVKENLAAVGLKGVEDRLPSELSGG 790
            + FGL   EN  +P +++   V+E L+ VG+   +DR P+ LSGG
Sbjct:  100 VAFGL---ENKGLPYKEMVSRVQEALSFVGMMDFKDREPARLSGG 141          
The following BLAST results are available for this feature:
BLAST of CK939384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
POTA_MYCMS3.145e-1146.55Spermidine/putrescine import ATP-binding protein p... [more]
POTA_MYCCT3.145e-1146.55Spermidine/putrescine import ATP-binding protein p... [more]
FBPC_PHOPR3.145e-1136.36Fe(3+) ions import ATP-binding protein fbpC OS=Pho... [more]
Y731_ARCFU3.165e-1139.06Putative ABC transporter ATP-binding protein AF_07... [more]
POTA_HAEDU4.075e-1142.86Spermidine/putrescine import ATP-binding protein p... [more]
POTA_ENTFA4.079e-1143.75Spermidine/putrescine import ATP-binding protein p... [more]
CYSA_NOCFA4.091e-1144.44Sulfate/thiosulfate import ATP-binding protein cys... [more]
NODI1_RHIME4.637e-1137.50Nod factor export ATP-binding protein I OS=Rhizobi... [more]
POTA_AGGAC5.289e-1140.32Spermidine/putrescine import ATP-binding protein p... [more]
CBIO2_STRT25.347e-1134.48Cobalt import ATP-binding protein cbiO 2 OS=Strept... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_D03 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939384 ID=CK939384; Name=CK939384; organism=Citrus sinensis; type=EST; length=791bp
GGGGAAATCACAAAATTATCAAAACCCAGTAGTTGAAATGCTTCGAAAAC
CACTTTTTATGTGAACTTCCATTGATTATTCTATTTTATTTTATTTTTTT
CATTTTGTGGTTTTTAGACCAAATATCAATCTGCGTCTGCTTTACAATTA
TAAACACCGAAAATGGTCTCTTTATCTTCATCTGGTTCACTGTTATTTCC
TCTCGCAACAAAAAGTGTTAGTTCTCGATTGTCTACACTTGCTAATTCGG
GCAAAAAGCCGATCAATTCGTTCTATTATAAGGCGAAAGAAGAACAGAGA
AAAGTCGTTTGTGCTTGTGTAGCGCCTCCAAGGGACTTGGGCACTGATGG
ATTCCCTGCCACCAAATTCAATGATTCATCTAAATCAGAGAATGTTAATA
CCTTATTCGAACCCGAGGATGATGGTGATGTTCTCATCGAGTGTCGGAAT
GTTTACAAGTCATTTGGGGAAAAGCATATATTGAGAGGTGTGAGCTTCAA
GATTAGACATGGTGAAGCTGTTGGTATAATAGGGCCTTCAGGCACTGGGA
AATCAACGATTTTAAAGATTATTGCTGGGCTTCTTGCTCCAGACAAGGGA
GAGGTTTACATTCGAGGTAGGAAGAGAGCTGGTTTGATTAGCGATGAGGA
GATATCTGGTCTTCGGATTGGATTGGTATGAAAATTCGAAGATGCCTGAT
GAACAAATTTCAGAGCTTGTGAAGGAAAATTTGGCTGCCGTTGGATTAAA
GGGAGTTGAGGATCGCTTACCATCTGAGTTGTCTGGTGGAA
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