CK939321

Overview
NameCK939321
Unique NameCK939321
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK939321_ssr568 microsatellite CK939321_ssr568:568..579. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10455 contig Csv1_Contig10455:360..1051. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER_BRANA (Ferredoxin OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.811e-35
Identity = 68/95 (71.58%), Postives = 77/95 (81.05%), Query Frame = 1
Query:  241 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            ATYKVK ITPEGEQE+EC DD Y+LDAAE+AGIDLPYSCRAGSCS+CAGK            FL+DDQI  G+VLTC AYPTSDVT+ETHK+EE+
Sbjct:    1 ATYKVKFITPEGEQEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGFVDQSDESFLDDDQIAEGFVLTCAAYPTSDVTIETHKEEEL 95          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER3_RAPSA (Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.262e-35
Identity = 67/95 (70.53%), Postives = 77/95 (81.05%), Query Frame = 1
Query:  241 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            ATYKVK ITPEGEQE+EC DD Y+LDAAE+AGIDLPYSCRAGSCS+CAGK            FL+DDQI  G+VLTC AYPTSDVT+ETH++E+M
Sbjct:    1 ATYKVKFITPEGEQEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDDQIAEGFVLTCAAYPTSDVTIETHREEDM 95          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER_WHEAT (Ferredoxin, chloroplastic OS=Triticum aestivum GN=PETF PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.395e-34
Identity = 68/108 (62.96%), Postives = 82/108 (75.93%), Query Frame = 1
Query:  205 ANNNRGGRVIAMATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 528
            A   RG R+ A ATYKVKL+TPEGE E+E PDD YILD AE+ GIDLPYSCRAGSCS+CAGK            FL+DDQ++AG+VLTC AYP SD+ +ETHK+EE++
Sbjct:   35 AKQVRGARLRAQATYKVKLVTPEGEVELEVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKLVSGEIDQSDQSFLDDDQMEAGWVLTCHAYPKSDIVIETHKEEELT 142          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER1_PHYES (Ferredoxin-1 OS=Phytolacca esculenta PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.301e-34
Identity = 64/96 (66.67%), Postives = 78/96 (81.25%), Query Frame = 1
Query:  241 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 528
            ATYKV L+TP G Q I+CPDDTY+LDAAE+AG+DLPYSCRAGSCS+CAGK            FL+DDQI+AG+VLTCVAYP  DVT+ETHK+E+++
Sbjct:    1 ATYKVTLVTPSGTQTIDCPDDTYVLDAAEEAGLDLPYSCRAGSCSSCAGKVTAGTVDQEDQSFLDDDQIEAGFVLTCVAYPKGDVTIETHKEEDIA 96          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER1_MAIZE (Ferredoxin-1, chloroplastic OS=Zea mays GN=FDX1 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.542e-33
Identity = 74/136 (54.41%), Postives = 94/136 (69.12%), Query Frame = 1
Query:  121 STSFIRNKPTVTSLKAMPNMGQALFGLKANNNRGGRVIAMATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 528
            S+S +R  P  T++ A+P     + G  A++ R  R+ A ATY VKLITPEGE E++ PDD YILD AE+ GIDLPYSCRAGSCS+CAGK            +L+D QI  G+VLTC AYPTSDV +ETHK+EE++
Sbjct:   16 SSSSLRAAPAPTAV-ALPAAKVGIMGRSASSRR--RLRAQATYNVKLITPEGEVELQVPDDVYILDQAEEDGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSYLDDGQIADGWVLTCHAYPTSDVVIETHKEEELT 148          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER1_APHFL (Ferredoxin-1 OS=Aphanizomenon flos-aquae PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.631e-33
Identity = 67/97 (69.07%), Postives = 78/97 (80.41%), Query Frame = 1
Query:  238 MATYKVKLITPEGEQE-IECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            MATYKV LI  EG    I+CPDDTYILDAAE+AG+DLPYSCRAG+CSTCAGK            FL+DDQ++AGYVLTCVAYPTSDVT+ETHK+E++
Sbjct:    1 MATYKVTLIDAEGTTTTIDCPDDTYILDAAEEAGLDLPYSCRAGACSTCAGKLVTGTIDQSDQSFLDDDQVEAGYVLTCVAYPTSDVTIETHKEEDL 97          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FERA_ALOMA (Ferredoxin-A OS=Alocasia macrorrhiza PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.436e-33
Identity = 62/96 (64.58%), Postives = 78/96 (81.25%), Query Frame = 1
Query:  241 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 528
            ATYKVKL+TP+G+QE +CPDD YILD AE+ GIDLPYSCRAGSCS+CAGK            FL+D+Q++ G+VLTCVA+PTSDV +ETHK+EE++
Sbjct:    1 ATYKVKLVTPQGQQEFDCPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVKQGEVDQSDGSFLDDEQMEQGWVLTCVAFPTSDVVIETHKEEELT 96          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER1_PHYAM (Ferredoxin-1 OS=Phytolacca americana PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.861e-33
Identity = 62/95 (65.26%), Postives = 76/95 (80.00%), Query Frame = 1
Query:  241 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            ATYKV L+TP G Q I+CPDDTY+LDAAE+AG+DLPYSCRAGSCS+C GK            FL+DDQI+AG+VLTCVA+P  DVT+ETHK+E++
Sbjct:    1 ATYKVTLVTPSGTQTIDCPDDTYVLDAAEEAGLDLPYSCRAGSCSSCTGKVTAGTVDQEDQSFLDDDQIEAGFVLTCVAFPKGDVTIETHKEEDI 95          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER_SAMNI (Ferredoxin OS=Sambucus nigra PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.997e-33
Identity = 63/96 (65.62%), Postives = 77/96 (80.21%), Query Frame = 1
Query:  241 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 528
            A+YKVKLITP+G QE ECPDD YIL+ AE+ GID+PYSCRAGSCS+CAGK            FL+D+QI+ G+VLTCVAYP SDVT+ETHK+EE++
Sbjct:    1 ASYKVKLITPDGPQEFECPDDVYILEHAEELGIDIPYSCRAGSCSSCAGKLVAGSVDQSDQSFLDDEQIEEGWVLTCVAYPKSDVTIETHKEEELT 96          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER_COLES (Ferredoxin OS=Colocasia esculenta PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.997e-33
Identity = 63/96 (65.62%), Postives = 75/96 (78.12%), Query Frame = 1
Query:  241 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 528
            ATYKVKL+TP G+QE +CPDD YILD AE+ GIDLPYSCRAGSCS+CAGK            FL+D+QI  G+VLTCVAYP SD T+ETHK+EE++
Sbjct:    1 ATYKVKLVTPSGQQEFQCPDDVYILDQAEEVGIDLPYSCRAGSCSSCAGKVKVGDVDQSDGSFLDDEQIGEGWVLTCVAYPVSDGTIETHKEEELT 96          
The following BLAST results are available for this feature:
BLAST of CK939321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_BRANA2.811e-3571.58Ferredoxin OS=Brassica napus PE=1 SV=1[more]
FER3_RAPSA6.262e-3570.53Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1[more]
FER_WHEAT1.395e-3462.96Ferredoxin, chloroplastic OS=Triticum aestivum GN=... [more]
FER1_PHYES5.301e-3466.67Ferredoxin-1 OS=Phytolacca esculenta PE=1 SV=1[more]
FER1_MAIZE1.542e-3354.41Ferredoxin-1, chloroplastic OS=Zea mays GN=FDX1 PE... [more]
FER1_APHFL2.631e-3369.07Ferredoxin-1 OS=Aphanizomenon flos-aquae PE=1 SV=2[more]
FERA_ALOMA3.436e-3364.58Ferredoxin-A OS=Alocasia macrorrhiza PE=1 SV=1[more]
FER1_PHYAM5.861e-3365.26Ferredoxin-1 OS=Phytolacca americana PE=1 SV=1[more]
FER_SAMNI9.997e-3365.63Ferredoxin OS=Sambucus nigra PE=1 SV=1[more]
FER_COLES9.997e-3365.63Ferredoxin OS=Colocasia esculenta PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_C08 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939321 ID=CK939321; Name=CK939321; organism=Citrus sinensis; type=EST; length=692bp
GGGGACCCAATTATCAACACAACCCTTCGCACCGGTCACCAAAACTCTCT
CTAGCTTCACATTCAGACACTCAGAAAGCAACAGAAAATAACAATGGCCG
CGCTCTCAAGCGCCATGGTCAGCACCTCATTCATCAGAAACAAGCCAACA
GTGACAAGCCTCAAGGCCATGCCCAACATGGGTCAGGCTTTGTTTGGCCT
TAAAGCCAACAACAACAGAGGTGGACGTGTAATAGCCATGGCTACATACA
AAGTCAAGCTCATTACACCCGAGGGAGAGCAAGAAATTGAGTGTCCTGAT
GACACATATATTCTTGATGCAGCTGAAGATGCTGGAATTGATCTCCCATA
TTCATGCAGGGCTGGTTCTTGCTCTACTTGTGCTGGGAAAGTTGTCTCTG
GTAGTGTTGACCAGTCAGATGGAAGCTTTCTTGAGGATGATCAAATAGAT
GCAGGTTATGTTCTCACTTGTGTTGCTTATCCTACAAGTGATGTTACTGT
TGAGACACACAAGGATGAAGAAATGTCTTAATTATGCGGCGCTTTAATAT
AACATGGAGAATTTTGATATTATTATTATTAATATTGTGTATGGTTTGGT
AATTTAGTGCCTTGTAAGGGGAATGTTGAAATATTGACGTGCTTTCTTGA
ATGAGTAATATGAAAAGGGGGATTTTGCTCTGTAAAAAAAAA
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