CK939321

Overview
NameCK939321
Unique NameCK939321
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK939321_ssr568 microsatellite CK939321_ssr568:568..579. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10455 contig Csv1_Contig10455:360..1051. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER_CAPAA (Ferredoxin OS=Capsicum annuum var. annuum PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.885e-31
Identity = 62/95 (65.26%), Postives = 74/95 (77.89%), Query Frame = 1
Query:  241 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            A+YKVKLITP+G  E +CPDD YILD AE+AG DLPYSCRAGSCS+CAGK            FL+DDQ++ G+VLTCVAYP SDVT+ETHK+ E+
Sbjct:    1 ASYKVKLITPDGPIEFDCPDDVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAEL 95          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER_DATME (Ferredoxin OS=Datura metel PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.462e-31
Identity = 61/96 (63.54%), Postives = 74/96 (77.08%), Query Frame = 1
Query:  241 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 528
            ATYKVKL+TP+G  E +CPDD YILD AE+ G DLPYSCRAGSCS+CAGK            +L+DDQ+  G+VLTCVAYP SDVT+ETHK+EE++
Sbjct:    1 ATYKVKLVTPDGPVEFDCPDDVYILDRAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMAEGFVLTCVAYPQSDVTIETHKEEELT 96          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER_DATIN (Ferredoxin OS=Datura inoxia PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.462e-31
Identity = 61/96 (63.54%), Postives = 74/96 (77.08%), Query Frame = 1
Query:  241 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 528
            ATYKVKL+TP+G  E +CPDD YILD AE+ G DLPYSCRAGSCS+CAGK            +L+DDQ+  G+VLTCVAYP SDVT+ETHK+EE++
Sbjct:    1 ATYKVKLVTPDGPVEFDCPDDVYILDRAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMAEGFVLTCVAYPQSDVTIETHKEEELT 96          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER_ARCLA (Ferredoxin OS=Arctium lappa PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.216e-31
Identity = 66/97 (68.04%), Postives = 78/97 (80.41%), Query Frame = 1
Query:  241 ATYKVKLITPEGEQEIECPDDTYILD-AAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 528
            ATYKV LITPEG+QE E PDD YILD AAE+ G DLPYSCRAGSCS+CAGK            +L+DDQ++AG+VLTCVAYPTSDVT+ETHK+EE++
Sbjct:    1 ATYKVTLITPEGKQEFEVPDDVYILDHAAEEVG-DLPYSCRAGSCSSCAGKVTAGSVDQSDGSYLDDDQMEAGWVLTCVAYPTSDVTIETHKEEELT 96          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER2_SPIOL (Ferredoxin-2 OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.216e-31
Identity = 61/96 (63.54%), Postives = 74/96 (77.08%), Query Frame = 1
Query:  241 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 528
            ATYKV L+TP G Q IEC DD YILDAAE+ G+DLPYSCRAG+CS+CAGK            FLED Q++ G+VLTC+AYPT DVT+ETHK+EE++
Sbjct:    1 ATYKVTLVTPSGSQVIECGDDEYILDAAEEKGMDLPYSCRAGACSSCAGKVTSGSVDQSDQSFLEDGQMEEGWVLTCIAYPTGDVTIETHKEEELT 96          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER2_PHYES (Ferredoxin-2 OS=Phytolacca esculenta PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.216e-31
Identity = 59/96 (61.46%), Postives = 76/96 (79.17%), Query Frame = 1
Query:  241 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 528
            A+YKV  +TP G + I CP DTY+LDAAED G+DLPYSCRAG+CS+CAGK            FL+++Q++AG+VLTCVAYPTSDVT+ETHK+E++S
Sbjct:    2 ASYKVTFVTPSGTKTITCPADTYVLDAAEDTGLDLPYSCRAGACSSCAGKVTAGSVNQEDGSFLDEEQMEAGWVLTCVAYPTSDVTIETHKEEDLS 97          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER_DATAR (Ferredoxin OS=Datura arborea PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.200e-31
Identity = 61/96 (63.54%), Postives = 74/96 (77.08%), Query Frame = 1
Query:  241 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 528
            ATYKVKL+TP+G  E +CPDD YILD AE+ G +LPYSCRAGSCS+CAGK            FL+DDQ+  G+VLTCVAYP SDVT+ETHK+EE++
Sbjct:    1 ATYKVKLVTPDGPVEFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVTAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEELT 96          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER_ATRBE (Ferredoxin OS=Atropa belladonna PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.200e-31
Identity = 61/96 (63.54%), Postives = 74/96 (77.08%), Query Frame = 1
Query:  241 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 528
            ATYKVKL+TP+G  E +CPDD YILD AE+ G +LPYSCRAGSCS+CAGK            FL+DDQ+  G+VLTCVAYP SDVT+ETHK+EE++
Sbjct:    1 ATYKVKLVTPDGPVEFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEELT 96          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER1_SYNP2 (Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=petF PE=3 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 4.200e-31
Identity = 63/96 (65.62%), Postives = 74/96 (77.08%), Query Frame = 1
Query:  238 MATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            MATYKV LITP+GE   + PDD YILD+A DAG DLP SCRAG+CSTCAGK            FL+DDQI+AGYVLTC+AYP SDVT+ET+K+EE+
Sbjct:    1 MATYKVTLITPDGEVSYDAPDDEYILDSAGDAGYDLPASCRAGACSTCAGKIVSGTVDQSEQSFLDDDQIEAGYVLTCIAYPQSDVTIETNKEEEL 96          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER_PHYAF (Ferredoxin OS=Physalis alkekengi var. francheti PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.486e-31
Identity = 62/96 (64.58%), Postives = 74/96 (77.08%), Query Frame = 1
Query:  241 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 528
            ATYKVKLITP+G    +CPD+ YILDAAE+ G DLPYSCRAGSCS+CAGK            FL+DDQ+  G+VLTCVAYP SDVT+ETHK+EE++
Sbjct:    1 ATYKVKLITPDGPVVFDCPDNEYILDAAEEQGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNFLDDDQVADGFVLTCVAYPQSDVTIETHKEEELT 96          
The following BLAST results are available for this feature:
BLAST of CK939321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_CAPAA1.885e-3165.26Ferredoxin OS=Capsicum annuum var. annuum PE=1 SV=... [more]
FER_DATME2.462e-3163.54Ferredoxin OS=Datura metel PE=1 SV=1[more]
FER_DATIN2.462e-3163.54Ferredoxin OS=Datura inoxia PE=1 SV=1[more]
FER_ARCLA3.216e-3168.04Ferredoxin OS=Arctium lappa PE=1 SV=1[more]
FER2_SPIOL3.216e-3163.54Ferredoxin-2 OS=Spinacia oleracea PE=1 SV=1[more]
FER2_PHYES3.216e-3161.46Ferredoxin-2 OS=Phytolacca esculenta PE=1 SV=1[more]
FER_DATAR4.200e-3163.54Ferredoxin OS=Datura arborea PE=1 SV=1[more]
FER_ATRBE4.200e-3163.54Ferredoxin OS=Atropa belladonna PE=1 SV=1[more]
FER1_SYNP24.200e-3165.63Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 272... [more]
FER_PHYAF5.486e-3164.58Ferredoxin OS=Physalis alkekengi var. francheti PE... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_C08 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939321 ID=CK939321; Name=CK939321; organism=Citrus sinensis; type=EST; length=692bp
GGGGACCCAATTATCAACACAACCCTTCGCACCGGTCACCAAAACTCTCT
CTAGCTTCACATTCAGACACTCAGAAAGCAACAGAAAATAACAATGGCCG
CGCTCTCAAGCGCCATGGTCAGCACCTCATTCATCAGAAACAAGCCAACA
GTGACAAGCCTCAAGGCCATGCCCAACATGGGTCAGGCTTTGTTTGGCCT
TAAAGCCAACAACAACAGAGGTGGACGTGTAATAGCCATGGCTACATACA
AAGTCAAGCTCATTACACCCGAGGGAGAGCAAGAAATTGAGTGTCCTGAT
GACACATATATTCTTGATGCAGCTGAAGATGCTGGAATTGATCTCCCATA
TTCATGCAGGGCTGGTTCTTGCTCTACTTGTGCTGGGAAAGTTGTCTCTG
GTAGTGTTGACCAGTCAGATGGAAGCTTTCTTGAGGATGATCAAATAGAT
GCAGGTTATGTTCTCACTTGTGTTGCTTATCCTACAAGTGATGTTACTGT
TGAGACACACAAGGATGAAGAAATGTCTTAATTATGCGGCGCTTTAATAT
AACATGGAGAATTTTGATATTATTATTATTAATATTGTGTATGGTTTGGT
AATTTAGTGCCTTGTAAGGGGAATGTTGAAATATTGACGTGCTTTCTTGA
ATGAGTAATATGAAAAGGGGGATTTTGCTCTGTAAAAAAAAA
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