CK939321

Overview
NameCK939321
Unique NameCK939321
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK939321_ssr568 microsatellite CK939321_ssr568:568..579. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10455 contig Csv1_Contig10455:360..1051. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER_SCOJA (Ferredoxin OS=Scopolia japonica PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.085e-30
Identity = 60/96 (62.50%), Postives = 73/96 (76.04%), Query Frame = 1
Query:  241 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 528
            ATYKVKL+TP+G  E +CPDD YILD AE+ G +LPYSCRAGSCS+CAGK            FL+DDQ+  G+VLTCVAYP SDV +ETHK+EE++
Sbjct:    1 ATYKVKLVTPDGPVEFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVIIETHKEEELT 96          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER_MASLA (Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.085e-30
Identity = 67/98 (68.37%), Postives = 75/98 (76.53%), Query Frame = 1
Query:  238 MATYKVKLITP-EG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            MATYKV LI   EG  + IE PDD YILDAAE+AGIDLPYSCRAG+CSTCAGK            FL+DDQI+AGYVLTCVAYPTSD  +ETHK+EE+
Sbjct:    1 MATYKVTLINEAEGLNKTIEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEEL 98          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER_LEUGL (Ferredoxin OS=Leucaena glauca PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.722e-30
Identity = 58/94 (61.70%), Postives = 73/94 (77.66%), Query Frame = 1
Query:  247 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 528
            +KVKL+TP+G +E ECPDD YILD AE+ GI+LPYSCRAGSCS+CAGK            FL+D+QI+ G+VLTC AYP SDV +ETHK+EE++
Sbjct:    2 FKVKLLTPDGPKEFECPDDVYILDQAEELGIELPYSCRAGSCSSCAGKLVEGDLDQSDQSFLDDEQIEEGWVLTCAAYPRSDVVIETHKEEELT 95          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER_SPIMA (Ferredoxin OS=Spirulina maxima PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 4.644e-30
Identity = 65/96 (67.71%), Postives = 76/96 (79.17%), Query Frame = 1
Query:  238 MATYKVKLITP-EGEQE-IECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDE 519
            MATYKV LI+  EG  E I+C DDTYILDAAE+AG+DLPYSCRAG+CSTCAGK            FL+DDQI+AGYVLTCVAYPTSD T++TH++E
Sbjct:    1 MATYKVTLISEAEGINETIDCDDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITSGSIDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIQTHQEE 96          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER_SOLLS (Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.921e-30
Identity = 60/95 (63.16%), Postives = 71/95 (74.74%), Query Frame = 1
Query:  241 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            A+YKVKLITP+G  E  CPDD YILD AE+ G DLPYSCRAG+CS+CAGK            FL+DDQI  G+VLTCVAYP S+VT+ETHK+E +
Sbjct:    1 ASYKVKLITPDGPIEFNCPDDVYILDRAEEEGHDLPYSCRAGACSSCAGKIVDGSVDQSDNSFLDDDQIGGGFVLTCVAYPKSNVTIETHKEEAL 95          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER_APHSA (Ferredoxin-1 OS=Aphanothece sacrum PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.351e-29
Identity = 59/96 (61.46%), Postives = 70/96 (72.92%), Query Frame = 1
Query:  238 MATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            MA+YKV L TP+G+  I  PDD YILD AE+ G+DLPYSCRAG+CSTCAGK            FL+DDQI AGY+LTCVAYPT D  +ETHK+E +
Sbjct:    1 MASYKVTLKTPDGDNVITVPDDEYILDVAEEEGLDLPYSCRAGACSTCAGKLVSGPAPDEDQSFLDDDQIQAGYILTCVAYPTGDCVIETHKEEAL 96          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER_SPIPL (Ferredoxin OS=Spirulina platensis PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.931e-29
Identity = 64/96 (66.67%), Postives = 74/96 (77.08%), Query Frame = 1
Query:  238 MATYKVKLITP-EGEQE-IECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDE 519
            MATYKV LI   EG  E I+C DDTYILDAAE+AG+DLPYSCRAG+CSTCAG             FL+DDQI+AGYVLTCVAYPTSD T++TH++E
Sbjct:    1 MATYKVTLINEAEGINETIDCDDDTYILDAAEEAGLDLPYSCRAGACSTCAGTITSGTIDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIKTHQEE 96          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER_NOSMU (Ferredoxin OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 6.706e-29
Identity = 63/98 (64.29%), Postives = 75/98 (76.53%), Query Frame = 1
Query:  238 MATYKVKLITP-EG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            MAT+KV LI   EG + EIE PDD YILDAAE+ G DLP+SCRAG+CSTCAGK            FL+DDQI+AGYVLTCVAYPTSDV ++THK+E++
Sbjct:    1 MATFKVTLINEAEGTKHEIEVPDDEYILDAAEEEGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER1_ANASP (Ferredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=petF PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 6.706e-29
Identity = 63/98 (64.29%), Postives = 75/98 (76.53%), Query Frame = 1
Query:  238 MATYKVKLITP-EG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            MAT+KV LI   EG + EIE PDD YILDAAE+ G DLP+SCRAG+CSTCAGK            FL+DDQI+AGYVLTCVAYPTSDV ++THK+E++
Sbjct:    1 MATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER1_ANASO (Ferredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=petF PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 6.706e-29
Identity = 63/98 (64.29%), Postives = 75/98 (76.53%), Query Frame = 1
Query:  238 MATYKVKLITP-EG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            MAT+KV LI   EG + EIE PDD YILDAAE+ G DLP+SCRAG+CSTCAGK            FL+DDQI+AGYVLTCVAYPTSDV ++THK+E++
Sbjct:    1 MATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98          
The following BLAST results are available for this feature:
BLAST of CK939321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_SCOJA2.085e-3062.50Ferredoxin OS=Scopolia japonica PE=1 SV=1[more]
FER_MASLA2.085e-3068.37Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1... [more]
FER_LEUGL2.722e-3061.70Ferredoxin OS=Leucaena glauca PE=1 SV=1[more]
FER_SPIMA4.644e-3067.71Ferredoxin OS=Spirulina maxima PE=1 SV=2[more]
FER_SOLLS7.921e-3063.16Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1[more]
FER_APHSA1.351e-2961.46Ferredoxin-1 OS=Aphanothece sacrum PE=1 SV=2[more]
FER_SPIPL3.931e-2966.67Ferredoxin OS=Spirulina platensis PE=1 SV=2[more]
FER_NOSMU6.706e-2964.29Ferredoxin OS=Nostoc muscorum PE=1 SV=2[more]
FER1_ANASP6.706e-2964.29Ferredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=... [more]
FER1_ANASO6.706e-2964.29Ferredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_C08 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939321 ID=CK939321; Name=CK939321; organism=Citrus sinensis; type=EST; length=692bp
GGGGACCCAATTATCAACACAACCCTTCGCACCGGTCACCAAAACTCTCT
CTAGCTTCACATTCAGACACTCAGAAAGCAACAGAAAATAACAATGGCCG
CGCTCTCAAGCGCCATGGTCAGCACCTCATTCATCAGAAACAAGCCAACA
GTGACAAGCCTCAAGGCCATGCCCAACATGGGTCAGGCTTTGTTTGGCCT
TAAAGCCAACAACAACAGAGGTGGACGTGTAATAGCCATGGCTACATACA
AAGTCAAGCTCATTACACCCGAGGGAGAGCAAGAAATTGAGTGTCCTGAT
GACACATATATTCTTGATGCAGCTGAAGATGCTGGAATTGATCTCCCATA
TTCATGCAGGGCTGGTTCTTGCTCTACTTGTGCTGGGAAAGTTGTCTCTG
GTAGTGTTGACCAGTCAGATGGAAGCTTTCTTGAGGATGATCAAATAGAT
GCAGGTTATGTTCTCACTTGTGTTGCTTATCCTACAAGTGATGTTACTGT
TGAGACACACAAGGATGAAGAAATGTCTTAATTATGCGGCGCTTTAATAT
AACATGGAGAATTTTGATATTATTATTATTAATATTGTGTATGGTTTGGT
AATTTAGTGCCTTGTAAGGGGAATGTTGAAATATTGACGTGCTTTCTTGA
ATGAGTAATATGAAAAGGGGGATTTTGCTCTGTAAAAAAAAA
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