CK939321

Overview
NameCK939321
Unique NameCK939321
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK939321_ssr568 microsatellite CK939321_ssr568:568..579. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10455 contig Csv1_Contig10455:360..1051. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER_CHLFU (Ferredoxin OS=Chlorella fusca PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.758e-29
Identity = 58/90 (64.44%), Postives = 70/90 (77.78%), Query Frame = 1
Query:  247 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKD 516
            YKV L TP GE+ IECP+DTYILDAAE+AG+DLPYSCRAG+CS+CAGK            FL+D Q+  G+VLTCVAYPTSDVT+ TH++
Sbjct:    1 YKVTLKTPSGEETIECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAYPTSDVTILTHQE 90          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER1_SYNP6 (Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF1 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 8.758e-29
Identity = 64/98 (65.31%), Postives = 74/98 (75.51%), Query Frame = 1
Query:  238 MATYKVKLITP-EG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            MATYKV L+   EG    I+  DDTYILDAAE+ GIDLPYSCRAG+CSTCAGK            FL+DDQI AG+VLTCVAYPTSDVT+ETHK+E++
Sbjct:    1 MATYKVTLVNAAEGLNTTIDVADDTYILDAAEEQGIDLPYSCRAGACSTCAGKVVSGTVDQSDQSFLDDDQIAAGFVLTCVAYPTSDVTIETHKEEDL 98          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER1_SYNE7 (Ferredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=petF PE=3 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 8.758e-29
Identity = 64/98 (65.31%), Postives = 74/98 (75.51%), Query Frame = 1
Query:  238 MATYKVKLITP-EG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            MATYKV L+   EG    I+  DDTYILDAAE+ GIDLPYSCRAG+CSTCAGK            FL+DDQI AG+VLTCVAYPTSDVT+ETHK+E++
Sbjct:    1 MATYKVTLVNAAEGLNTTIDVADDTYILDAAEEQGIDLPYSCRAGACSTCAGKVVSGTVDQSDQSFLDDDQIAAGFVLTCVAYPTSDVTIETHKEEDL 98          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER1_RAPSA (Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.758e-29
Identity = 60/96 (62.50%), Postives = 70/96 (72.92%), Query Frame = 1
Query:  241 ATYKVKLITPEG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            A YKVKLI P+G E E + PDD YILDAAE+AG+DLPYSCRAG+CSTCAGK            FLED   + GYVLTCVAYP SD+ + THK+EE+
Sbjct:    2 AVYKVKLIGPDGQENEFDVPDDQYILDAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQSDGSFLEDHHFEKGYVLTCVAYPQSDLVIHTHKEEEL 97          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER_CHLRE (Ferredoxin, chloroplastic OS=Chlamydomonas reinhardtii GN=PETF PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.494e-28
Identity = 60/100 (60.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query:  226 RVIAMATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            R+  MA YKV L TP G++ IECP DTYILDAAE+AG+DLPYSCRAG+CS+CAGK            FL+D Q+  G+VLTCVAYPTSD T++TH++E +
Sbjct:   27 RMSCMA-YKVTLKTPSGDKTIECPADTYILDAAEEAGLDLPYSCRAGACSSCAGKVAAGTVDQSDQSFLDDAQMGNGFVLTCVAYPTSDCTIQTHQEEAL 125          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER1_NOSMU (Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.951e-28
Identity = 62/98 (63.27%), Postives = 73/98 (74.49%), Query Frame = 1
Query:  238 MAT-YKVKLITPEG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            MAT YKV L+  EG E  I+ PDD YILD AED G+DLPYSCRAG+CSTCAGK            FL+DDQI+ GYVLTCVAYPTSD+ +ETHK+E++
Sbjct:    1 MATVYKVTLVDQEGTETTIDVPDDEYILDIAEDQGLDLPYSCRAGACSTCAGKIVSGTVDQSDQSFLDDDQIEKGYVLTCVAYPTSDLKIETHKEEDL 98          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER1_ANAVT (Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petF1 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.548e-28
Identity = 62/98 (63.27%), Postives = 74/98 (75.51%), Query Frame = 1
Query:  238 MATYKVKLITP-EGEQE-IECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            MAT+KV LI   EG    I+ PDD YILDAAE+ G DLP+SCRAG+CSTCAGK            FL+DDQI+AGYVLTCVAYPTSDVT++THK+E++
Sbjct:    1 MATFKVTLINEAEGTSNTIDVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVTIQTHKEEDL 98          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER_SYNLI (Ferredoxin OS=Synechococcus lividus PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.346e-28
Identity = 56/96 (58.33%), Postives = 71/96 (73.96%), Query Frame = 1
Query:  238 MATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            MATYKV L+ P+GE  I+ P+D YILD AE+ G+DLP+SCRAG+CSTCAGK            FL+DDQI+ G+VLTCVAYP SD  + TH++EE+
Sbjct:    1 MATYKVTLVRPDGETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTHQEEEL 96          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER_GLEJA (Ferredoxin OS=Gleichenia japonica PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.346e-28
Identity = 54/95 (56.84%), Postives = 71/95 (74.74%), Query Frame = 1
Query:  241 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            A +KVK +TP+GE+ IE PDD +ILDA E+AG+DLPYSCRAG+CS+C GK            FL+DDQ+  G+VLTCVAYP  D+T+ETH +E++
Sbjct:    1 AIFKVKFLTPDGERTIEVPDDKFILDAGEEAGLDLPYSCRAGACSSCTGKLLDGRVDQSEQSFLDDDQMAEGFVLTCVAYPAGDITIETHAEEKL 95          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER3_MAIZE (Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.346e-28
Identity = 59/100 (59.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query:  229 VIAMATYKVKLITPEGEQ-EIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            V AMA YKVKL+ PEGE+ E + PDD YILDAAE AG++LPYSCRAG+CSTCAGK            FL+D Q + GYVLTCV+YP SD  + THK+ ++
Sbjct:   52 VSAMAVYKVKLVGPEGEEHEFDAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFLDDGQQEEGYVLTCVSYPKSDCVIHTHKEGDL 151          
The following BLAST results are available for this feature:
BLAST of CK939321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_CHLFU8.758e-2964.44Ferredoxin OS=Chlorella fusca PE=1 SV=1[more]
FER1_SYNP68.758e-2965.31Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 271... [more]
FER1_SYNE78.758e-2965.31Ferredoxin-1 OS=Synechococcus elongatus (strain PC... [more]
FER1_RAPSA8.758e-2962.50Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=... [more]
FER_CHLRE1.494e-2860.00Ferredoxin, chloroplastic OS=Chlamydomonas reinhar... [more]
FER1_NOSMU1.951e-2863.27Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2[more]
FER1_ANAVT2.548e-2863.27Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 2... [more]
FER_SYNLI4.346e-2858.33Ferredoxin OS=Synechococcus lividus PE=1 SV=2[more]
FER_GLEJA4.346e-2856.84Ferredoxin OS=Gleichenia japonica PE=1 SV=1[more]
FER3_MAIZE4.346e-2859.00Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_C08 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939321 ID=CK939321; Name=CK939321; organism=Citrus sinensis; type=EST; length=692bp
GGGGACCCAATTATCAACACAACCCTTCGCACCGGTCACCAAAACTCTCT
CTAGCTTCACATTCAGACACTCAGAAAGCAACAGAAAATAACAATGGCCG
CGCTCTCAAGCGCCATGGTCAGCACCTCATTCATCAGAAACAAGCCAACA
GTGACAAGCCTCAAGGCCATGCCCAACATGGGTCAGGCTTTGTTTGGCCT
TAAAGCCAACAACAACAGAGGTGGACGTGTAATAGCCATGGCTACATACA
AAGTCAAGCTCATTACACCCGAGGGAGAGCAAGAAATTGAGTGTCCTGAT
GACACATATATTCTTGATGCAGCTGAAGATGCTGGAATTGATCTCCCATA
TTCATGCAGGGCTGGTTCTTGCTCTACTTGTGCTGGGAAAGTTGTCTCTG
GTAGTGTTGACCAGTCAGATGGAAGCTTTCTTGAGGATGATCAAATAGAT
GCAGGTTATGTTCTCACTTGTGTTGCTTATCCTACAAGTGATGTTACTGT
TGAGACACACAAGGATGAAGAAATGTCTTAATTATGCGGCGCTTTAATAT
AACATGGAGAATTTTGATATTATTATTATTAATATTGTGTATGGTTTGGT
AATTTAGTGCCTTGTAAGGGGAATGTTGAAATATTGACGTGCTTTCTTGA
ATGAGTAATATGAAAAGGGGGATTTTGCTCTGTAAAAAAAAA
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