CK939321

Overview
NameCK939321
Unique NameCK939321
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK939321_ssr568 microsatellite CK939321_ssr568:568..579. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10455 contig Csv1_Contig10455:360..1051. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER1_CYAPA (Ferredoxin-1 OS=Cyanophora paradoxa GN=petF PE=1 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 4.346e-28
Identity = 61/98 (62.24%), Postives = 72/98 (73.47%), Query Frame = 1
Query:  238 MATYKVKLITPEG--EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            MA YKV+LI  E   +  IECPDD YILDAAE+ GIDLPYSCRAG+CSTCAGK            FL+D Q+ AGYVLTCVAYP+SD TV+TH++E +
Sbjct:    1 MAVYKVRLICEEQGLDTTIECPDDEYILDAAEEQGIDLPYSCRAGACSTCAGKVVEGTVDQSDQSFLDDAQLAAGYVLTCVAYPSSDCTVKTHQEESL 98          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER_SYNP4 (Ferredoxin OS=Synechococcus sp. (strain PCC 7418) PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 7.414e-28
Identity = 61/98 (62.24%), Postives = 71/98 (72.45%), Query Frame = 1
Query:  238 MATYKVKLITPEG--EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            MA+YKV LI  E    + IE PDD YILD AE+ GIDLPYSCRAG+CSTCAGK            FL+DDQI+AGYVLTCVAYP SD T+ TH++EE+
Sbjct:    1 MASYKVTLINEEMGLNETIEVPDDEYILDVAEEEGIDLPYSCRAGACSTCAGKIKEGEIDQSDQSFLDDDQIEAGYVLTCVAYPASDCTIITHQEEEL 98          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER_MARPO (Ferredoxin OS=Marchantia polymorpha PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.683e-28
Identity = 55/94 (58.51%), Postives = 71/94 (75.53%), Query Frame = 1
Query:  244 TYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            T+KV L TP G+  I+  DD YILDAAE+AG+ LPYSCRAG+CS+CAGK            FL+DDQ+D GYVLTC+AYPTSD+T++TH++E +
Sbjct:    1 TFKVTLNTPTGQSVIDVEDDEYILDAAEEAGLSLPYSCRAGACSSCAGKVTAGEVDQSDESFLDDDQMDEGYVLTCIAYPTSDLTIDTHQEEAL 94          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER_GUITH (Ferredoxin OS=Guillardia theta GN=petF PE=3 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 9.683e-28
Identity = 59/94 (62.77%), Postives = 69/94 (73.40%), Query Frame = 1
Query:  238 MATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDE 519
            MATYKVKL     ++ I+CPDD YILDAAE+ GIDLPYSCRAG+CSTCAGK            FL+D QI  G+VLTCVAYPTSD T+ TH++E
Sbjct:    1 MATYKVKLSGEGVDKTIDCPDDQYILDAAEEQGIDLPYSCRAGACSTCAGKVAAGSVDQSDQSFLDDSQIGDGFVLTCVAYPTSDCTILTHQEE 94          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER_EUGVI (Ferredoxin OS=Euglena viridis PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.683e-28
Identity = 56/95 (58.95%), Postives = 69/95 (72.63%), Query Frame = 1
Query:  241 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            ATY VKLI P+GE  IEC +D YILDAAEDAGIDLPYSCRAG+CS+C G             FL+DDQ+  G+ LTC  YPTS+ T+ETHK++++
Sbjct:    1 ATYSVKLINPDGEVTIECGEDQYILDAAEDAGIDLPYSCRAGACSSCTGIVKEGTVDQSDQSFLDDDQMAKGFCLTCTTYPTSNCTIETHKEDDL 95          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER1_DUNSA (Ferredoxin-1 OS=Dunaliella salina PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.265e-27
Identity = 56/94 (59.57%), Postives = 71/94 (75.53%), Query Frame = 1
Query:  244 TYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            +Y V L TP GEQ++E   D+YILDAAE+AG+DLPYSCRAGSCS+CAGK            FL+DDQ+D+G+VLTCVAY TSD T+ TH++E +
Sbjct:    1 SYMVTLKTPSGEQKVEVSPDSYILDAAEEAGVDLPYSCRAGSCSSCAGKVESGTVDQSDQSFLDDDQMDSGFVLTCVAYATSDCTIVTHQEENL 94          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER2_RAPSA (Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.817e-27
Identity = 58/96 (60.42%), Postives = 69/96 (71.88%), Query Frame = 1
Query:  241 ATYKVKLITPEGEQ-EIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            A YKVKLI PEGE+ E E  DD +ILDAAE+AG+DLPYSCRAG+CSTCAG+            FLEDD  + G+VLTCVAYP SD  + THK+ E+
Sbjct:    2 AVYKVKLIGPEGEENEFEVQDDQFILDAAEEAGVDLPYSCRAGACSTCAGQIVKGQVDQSEGSFLEDDHFEKGFVLTCVAYPQSDCVIHTHKETEL 97          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER3_CYACA (Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.806e-27
Identity = 55/97 (56.70%), Postives = 72/97 (74.23%), Query Frame = 1
Query:  241 ATYKVKLITPEG--EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            A+YK+ L+  +   ++ IECPDD YILDAAE+ G+DLPYSCRAG+CSTCAGK            FL+DDQ+ AG+VLTCVAYPTS+ T+ TH++E +
Sbjct:    1 ASYKIHLVNKDQGIDETIECPDDQYILDAAEEQGLDLPYSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQVKAGFVLTCVAYPTSNATILTHQEESL 97          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER1_PLEBO (Ferredoxin-1 OS=Plectonema boryanum GN=petF1 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.071e-26
Identity = 61/98 (62.24%), Postives = 71/98 (72.45%), Query Frame = 1
Query:  238 MATYKVKLITP-EG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            M ++KV LI   EG    IE PDD YILDAAE+ GIDLPYSCRAG+CSTCAGK            FL+DDQI AGYVLTCVAYPTSD T+ TH++E++
Sbjct:    1 MPSFKVTLINETEGLNTTIEVPDDEYILDAAEEQGIDLPYSCRAGACSTCAGKITAGTVDQSDQSFLDDDQIQAGYVLTCVAYPTSDCTILTHQEEDL 98          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER_THAWE (Ferredoxin OS=Thalassiosira weissflogii GN=petF PE=3 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 1.826e-26
Identity = 56/98 (57.14%), Postives = 72/98 (73.47%), Query Frame = 1
Query:  238 MATYKVKLITPEGE--QEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            MATYKV LI+ E +    I+C DD ++LDAAE+AGIDLPYSCRAG+CSTCAGK            FL+DDQ+ AG+VLTC+AYP SD T+  H+++E+
Sbjct:    1 MATYKVTLISEEHDINTTIDCNDDVFVLDAAEEAGIDLPYSCRAGACSTCAGKVTEGTIDQSEQTFLDDDQMGAGFVLTCIAYPKSDCTILVHQEDEL 98          
The following BLAST results are available for this feature:
BLAST of CK939321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER1_CYAPA4.346e-2862.24Ferredoxin-1 OS=Cyanophora paradoxa GN=petF PE=1 S... [more]
FER_SYNP47.414e-2862.24Ferredoxin OS=Synechococcus sp. (strain PCC 7418) ... [more]
FER_MARPO9.683e-2858.51Ferredoxin OS=Marchantia polymorpha PE=1 SV=1[more]
FER_GUITH9.683e-2862.77Ferredoxin OS=Guillardia theta GN=petF PE=3 SV=3[more]
FER_EUGVI9.683e-2858.95Ferredoxin OS=Euglena viridis PE=1 SV=1[more]
FER1_DUNSA1.265e-2759.57Ferredoxin-1 OS=Dunaliella salina PE=1 SV=1[more]
FER2_RAPSA2.817e-2760.42Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=... [more]
FER3_CYACA4.806e-2756.70Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=... [more]
FER1_PLEBO1.071e-2662.24Ferredoxin-1 OS=Plectonema boryanum GN=petF1 PE=3 ... [more]
FER_THAWE1.826e-2657.14Ferredoxin OS=Thalassiosira weissflogii GN=petF PE... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_C08 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939321 ID=CK939321; Name=CK939321; organism=Citrus sinensis; type=EST; length=692bp
GGGGACCCAATTATCAACACAACCCTTCGCACCGGTCACCAAAACTCTCT
CTAGCTTCACATTCAGACACTCAGAAAGCAACAGAAAATAACAATGGCCG
CGCTCTCAAGCGCCATGGTCAGCACCTCATTCATCAGAAACAAGCCAACA
GTGACAAGCCTCAAGGCCATGCCCAACATGGGTCAGGCTTTGTTTGGCCT
TAAAGCCAACAACAACAGAGGTGGACGTGTAATAGCCATGGCTACATACA
AAGTCAAGCTCATTACACCCGAGGGAGAGCAAGAAATTGAGTGTCCTGAT
GACACATATATTCTTGATGCAGCTGAAGATGCTGGAATTGATCTCCCATA
TTCATGCAGGGCTGGTTCTTGCTCTACTTGTGCTGGGAAAGTTGTCTCTG
GTAGTGTTGACCAGTCAGATGGAAGCTTTCTTGAGGATGATCAAATAGAT
GCAGGTTATGTTCTCACTTGTGTTGCTTATCCTACAAGTGATGTTACTGT
TGAGACACACAAGGATGAAGAAATGTCTTAATTATGCGGCGCTTTAATAT
AACATGGAGAATTTTGATATTATTATTATTAATATTGTGTATGGTTTGGT
AATTTAGTGCCTTGTAAGGGGAATGTTGAAATATTGACGTGCTTTCTTGA
ATGAGTAATATGAAAAGGGGGATTTTGCTCTGTAAAAAAAAA
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