CK939321

Overview
NameCK939321
Unique NameCK939321
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK939321_ssr568 microsatellite CK939321_ssr568:568..579. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10455 contig Csv1_Contig10455:360..1051. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER_PERBI (Ferredoxin OS=Peridinium bipes PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.313e-26
Identity = 53/93 (56.99%), Postives = 67/93 (72.04%), Query Frame = 1
Query:  247 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            +KV L TP+G++  ECP D+YILD AE+ G++LPYSCRAGSCS+CAGK            FL+DDQ   GY LTCV YPTSDVT++TH + E+
Sbjct:    1 FKVTLDTPDGKKSFECPGDSYILDKAEEEGLELPYSCRAGSCSSCAGKVLTGSIDQSDQAFLDDDQGGDGYCLTCVTYPTSDVTIKTHCESEL 93          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER_THEVL (Ferredoxin-1 OS=Thermosynechococcus vulcanus GN=petF1 PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 6.939e-26
Identity = 55/97 (56.70%), Postives = 71/97 (73.20%), Query Frame = 1
Query:  238 MATYKVKLITPEG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            MATYKV L+ P+G E  I+ P+D YILD AE+ G+DLP+SCRAG+CSTCAGK            FL+DDQI+ G+VLTCVAYP SD  + T+++EE+
Sbjct:    1 MATYKVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 97          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER_THEEB (Ferredoxin-1 OS=Thermosynechococcus elongatus (strain BP-1) GN=petF1 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 6.939e-26
Identity = 55/97 (56.70%), Postives = 71/97 (73.20%), Query Frame = 1
Query:  238 MATYKVKLITPEG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            MATYKV L+ P+G E  I+ P+D YILD AE+ G+DLP+SCRAG+CSTCAGK            FL+DDQI+ G+VLTCVAYP SD  + T+++EE+
Sbjct:    1 MATYKVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 97          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER_SYNEN (Ferredoxin-1 OS=Synechococcus elongatus naegeli GN=petF1 PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 6.939e-26
Identity = 55/97 (56.70%), Postives = 71/97 (73.20%), Query Frame = 1
Query:  238 MATYKVKLITPEG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            MATYKV L+ P+G E  I+ P+D YILD AE+ G+DLP+SCRAG+CSTCAGK            FL+DDQI+ G+VLTCVAYP SD  + T+++EE+
Sbjct:    1 MATYKVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 97          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER_PHYPA (Ferredoxin, chloroplastic OS=Physcomitrella patens GN=PETF PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.939e-26
Identity = 65/145 (44.83%), Postives = 85/145 (58.62%), Query Frame = 1
Query:   97 AALSSAMVSTSFIRNKPTVTSLKAMPNMGQALFGLKANNNRGGRVIAMATYKVKLITPE--GEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            AA  +++V  + I     V +++         FGLK+ +   GR+  MATYKV  +  E   E   EC D+ Y LDAAE AG+DLPYSCRAG+CS+CAG             FL+D QID G+VLTCVAYP SD  + TH++E M
Sbjct:    3 AAAMTSIVPVASIAPVSKVANVRPSSVSVAKAFGLKSRSM--GRLTCMATYKVTFLDGETGAENVXECSDEEYXLDAAERAGMDLPYSCRAGACSSCAGIIKAGEVDQSDQSFLDDSQIDDGFVLTCVAYPASDCIIXTHQEENM 145          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER2_DUNSA (Ferredoxin-2 OS=Dunaliella salina PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.939e-26
Identity = 55/93 (59.14%), Postives = 66/93 (70.97%), Query Frame = 1
Query:  247 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            YKV L TP G+Q IE   D YILDAAE+AG+DLPYSCRAG+CS+CAGK            FL+DDQ   G+VLTCVAY TSD T+ TH++E +
Sbjct:    2 YKVTLKTPSGDQTIEVSPDAYILDAAEEAGLDLPYSCRAGACSSCAGKVEAGTIDQSDQSFLDDDQQGRGFVLTCVAYATSDCTISTHQEESL 94          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER_BRYMA (Ferredoxin OS=Bryopsis maxima PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.063e-26
Identity = 55/96 (57.29%), Postives = 71/96 (73.96%), Query Frame = 1
Query:  241 ATYKVKLITPEG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            A+YKV L   +G E  I+C +D++ILD AE+ GID+P+SCR+GSCSTCAGK            FL+DDQ++ GYVLTCVAYPTSD T+ TH++EEM
Sbjct:    1 ASYKVTLKLDDGSEAVIDCDEDSFILDVAEEEGIDIPFSCRSGSCSTCAGKIEGGTVDQSEQTFLDDDQMEEGYVLTCVAYPTSDCTILTHQEEEM 96          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER1_CYACA (Ferredoxin OS=Cyanidium caldarium GN=petF PE=3 SV=3)

HSP 1 Score: 116.701 bits (291), Expect = 1.184e-25
Identity = 58/98 (59.18%), Postives = 71/98 (72.45%), Query Frame = 1
Query:  238 MATYKVKLITP-EG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            M +YKVKL    EG + EI CP+D YILDAAE+ GIDLPYSCRAG+CSTCAGK            FL+D+QI  G+VLTCVAYPTS+ T+ TH++E +
Sbjct:    1 MTSYKVKLTNEKEGIDVEINCPNDQYILDAAEEQGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDEQIKEGFVLTCVAYPTSNCTILTHQEEAL 98          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER_ODOSI (Ferredoxin OS=Odontella sinensis GN=petF PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.546e-25
Identity = 54/98 (55.10%), Postives = 72/98 (73.47%), Query Frame = 1
Query:  238 MATYKVKLITPEGEQE--IECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            MATYKV L++ E + +  I+C DD ++LDAAE+ GI+LPYSCRAG+CSTCAGK            FL+DDQ+ AG+VLTC+AYP SD TV  H+++E+
Sbjct:    1 MATYKVTLLSEEHDIDATIDCNDDVFLLDAAEEQGIELPYSCRAGACSTCAGKVTEGDIDQSEQTFLDDDQVGAGFVLTCIAYPKSDCTVLVHQEDEL 98          
BLAST of CK939321 vs. ExPASy Swiss-Prot
Match: FER6_MAIZE (Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.019e-25
Identity = 52/98 (53.06%), Postives = 70/98 (71.43%), Query Frame = 1
Query:  235 AMATYKVKLITPEG-EQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 525
            A   +KVKL+ P+G E E E PDDTYIL+AAE AG++LP+SCRAGSCSTCAG+            FL+D Q+  GY+LTC++YP +D  + THK+E++
Sbjct:   57 AAVLHKVKLVGPDGTEHEFEAPDDTYILEAAETAGVELPFSCRAGSCSTCAGRMSAGEVDQSEGSFLDDGQMAEGYLLTCISYPKADCVIHTHKEEDL 154          
The following BLAST results are available for this feature:
BLAST of CK939321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_PERBI5.313e-2656.99Ferredoxin OS=Peridinium bipes PE=1 SV=1[more]
FER_THEVL6.939e-2656.70Ferredoxin-1 OS=Thermosynechococcus vulcanus GN=pe... [more]
FER_THEEB6.939e-2656.70Ferredoxin-1 OS=Thermosynechococcus elongatus (str... [more]
FER_SYNEN6.939e-2656.70Ferredoxin-1 OS=Synechococcus elongatus naegeli GN... [more]
FER_PHYPA6.939e-2644.83Ferredoxin, chloroplastic OS=Physcomitrella patens... [more]
FER2_DUNSA6.939e-2659.14Ferredoxin-2 OS=Dunaliella salina PE=1 SV=1[more]
FER_BRYMA9.063e-2657.29Ferredoxin OS=Bryopsis maxima PE=1 SV=1[more]
FER1_CYACA1.184e-2559.18Ferredoxin OS=Cyanidium caldarium GN=petF PE=3 SV=... [more]
FER_ODOSI1.546e-2555.10Ferredoxin OS=Odontella sinensis GN=petF PE=3 SV=2[more]
FER6_MAIZE2.019e-2553.06Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_C08 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939321 ID=CK939321; Name=CK939321; organism=Citrus sinensis; type=EST; length=692bp
GGGGACCCAATTATCAACACAACCCTTCGCACCGGTCACCAAAACTCTCT
CTAGCTTCACATTCAGACACTCAGAAAGCAACAGAAAATAACAATGGCCG
CGCTCTCAAGCGCCATGGTCAGCACCTCATTCATCAGAAACAAGCCAACA
GTGACAAGCCTCAAGGCCATGCCCAACATGGGTCAGGCTTTGTTTGGCCT
TAAAGCCAACAACAACAGAGGTGGACGTGTAATAGCCATGGCTACATACA
AAGTCAAGCTCATTACACCCGAGGGAGAGCAAGAAATTGAGTGTCCTGAT
GACACATATATTCTTGATGCAGCTGAAGATGCTGGAATTGATCTCCCATA
TTCATGCAGGGCTGGTTCTTGCTCTACTTGTGCTGGGAAAGTTGTCTCTG
GTAGTGTTGACCAGTCAGATGGAAGCTTTCTTGAGGATGATCAAATAGAT
GCAGGTTATGTTCTCACTTGTGTTGCTTATCCTACAAGTGATGTTACTGT
TGAGACACACAAGGATGAAGAAATGTCTTAATTATGCGGCGCTTTAATAT
AACATGGAGAATTTTGATATTATTATTATTAATATTGTGTATGGTTTGGT
AATTTAGTGCCTTGTAAGGGGAATGTTGAAATATTGACGTGCTTTCTTGA
ATGAGTAATATGAAAAGGGGGATTTTGCTCTGTAAAAAAAAA
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