CK939318

Overview
NameCK939318
Unique NameCK939318
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1192 contig Csv1_Contig1192:397..1159. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939318 vs. ExPASy Swiss-Prot
Match: ZDH1_STAAN (Zinc-type alcohol dehydrogenase-like protein SA1988 OS=Staphylococcus aureus (strain N315) GN=SA1988 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.788e-12
Identity = 53/190 (27.89%), Postives = 89/190 (46.84%), Query Frame = 2
Query:  182 KHVELSVPTPSKDEVLPKLEATALNPVDWKVQKGQLRPFLPRKFPCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNGGGLAEFAVAKESSTVTRPPEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGS-GQQKNILVTAASGGVGHYAVQLAK-LGNTHVTASCGARXXEFVKSLGADXVLDYK 745
            K  E   PTP  D++L K+ + ++NPVD K ++ ++      + P +   D             +F  GD  V F        G  A + +  E+     P  +SA E   LP+ G+TA++    +  +  + S    K++L+   +GGVG  A Q+AK  G T +T +      E+ + +GAD VL++K
Sbjct:   19 KVYEQRKPTPENDDILVKVNSISVNPVDTKQRQMKV-----TQAPRVLGFDAIGTVEAIGPDVTLFSPGD--VVFYAGSPNRQGSNATYQLVSEAIVAKAPHNISANEAVSLPLTGITAYETFFDTFKISHNPSENVGKSVLIINGAGGVGSIATQIAKRYGLTVITTASRQETTEWCEKMGADIVLNHK 201          
BLAST of CK939318 vs. ExPASy Swiss-Prot
Match: ZDH1_STAAM (Zinc-type alcohol dehydrogenase-like protein SAV2186 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV2186 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.788e-12
Identity = 53/190 (27.89%), Postives = 89/190 (46.84%), Query Frame = 2
Query:  182 KHVELSVPTPSKDEVLPKLEATALNPVDWKVQKGQLRPFLPRKFPCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNGGGLAEFAVAKESSTVTRPPEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGS-GQQKNILVTAASGGVGHYAVQLAK-LGNTHVTASCGARXXEFVKSLGADXVLDYK 745
            K  E   PTP  D++L K+ + ++NPVD K ++ ++      + P +   D             +F  GD  V F        G  A + +  E+     P  +SA E   LP+ G+TA++    +  +  + S    K++L+   +GGVG  A Q+AK  G T +T +      E+ + +GAD VL++K
Sbjct:   19 KVYEQRKPTPENDDILVKVNSISVNPVDTKQRQMKV-----TQAPRVLGFDAIGTVEAIGPDVTLFSPGD--VVFYAGSPNRQGSNATYQLVSEAIVAKAPHNISANEAVSLPLTGITAYETFFDTFKISHNPSENVGKSVLIINGAGGVGSIATQIAKRYGLTVITTASRQETTEWCEKMGADIVLNHK 201          
BLAST of CK939318 vs. ExPASy Swiss-Prot
Match: ZDH1_STAES (Zinc-type alcohol dehydrogenase-like protein SE_1777 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_1777 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.159e-11
Identity = 51/184 (27.72%), Postives = 88/184 (47.83%), Query Frame = 2
Query:  200 VPTPSKDEVLPKLEATALNPVDWKVQKGQLRPFLPRKFPCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNGGGLAEFAVAKESSTVTRPPEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGS-GQQKNILVTAASGGVGHYAVQLAKL-GNTHVTASCGARXXEFVKSLGADXVLDYK 745
            +P PS  E+L K+++ ++NPVD K      R     K P +   D             +F+ GD  V F +      G   E+ + +E      P  + + + + LP+ GLTA++ L    G+  + S  + K++L+   +GGVG  A Q+AK  G   +T +      ++  ++GAD VL++K
Sbjct:   25 IPHPSGHELLVKVQSISVNPVDTKQ-----RTMPVDKVPRVLGFDAVGVIEKIGDQVSMFQEGD--VVFYSGSPNQNGSNEEYQLIEEYLVAKAPTNLKSEQAASLPLTGLTAYETLFDVFGISKEPSENKGKSLLIINGAGGVGSIATQIAKFYGLKVITTASREDTIKWSVNMGADVVLNHK 201          
BLAST of CK939318 vs. ExPASy Swiss-Prot
Match: ZDH1_STAEQ (Zinc-type alcohol dehydrogenase-like protein SERP1785 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP1785 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.514e-11
Identity = 51/184 (27.72%), Postives = 88/184 (47.83%), Query Frame = 2
Query:  200 VPTPSKDEVLPKLEATALNPVDWKVQKGQLRPFLPRKFPCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNGGGLAEFAVAKESSTVTRPPEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGS-GQQKNILVTAASGGVGHYAVQLAKL-GNTHVTASCGARXXEFVKSLGADXVLDYK 745
            +P PS  E+L K+++ ++NPVD K      R     K P +   D             +F+ GD  V F +      G   E+ + +E      P  + + + + LP+ GLTA++ L    G+  + S  + K++L+   +GGVG  A Q+AK  G   +T +      ++  ++GAD VL++K
Sbjct:   25 IPHPSGHELLVKVQSISVNPVDTKQ-----RTMPVDKAPRVLGFDAVGVIEKIGDQVSMFQEGD--VVFYSGSPNQNGSNEEYQLIEEYLVAKAPTNLKSEQAASLPLTGLTAYETLFDVFGISKEPSENKGKSLLIINGAGGVGSIATQIAKFYGLKVITTASREDTIKWSVNMGADVVLNHK 201          
BLAST of CK939318 vs. ExPASy Swiss-Prot
Match: YGD6_SCHPO (Zinc-type alcohol dehydrogenase-like protein C1773.06c OS=Schizosaccharomyces pombe GN=SPBC1773.06c PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.405e-11
Identity = 71/218 (32.57%), Postives = 96/218 (44.04%), Query Frame = 2
Query:  167 GAADLKHVELSVPTP-SKDEVLPKLEATALNPVDWKVQKGQLRPFLPRKFPCIPATDXXXXXXXXXXXXKIFKAGDKVVA--FLNYLV--------------TNGGGLAEFAVAKESSTVTRPPEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RXXEFVKSLGADXVLDY-KTPDGAA 763
            G   LK  E  VP   +  EVL KL+A +LN  D  + KG L P LP + P +P +D            + F+ GD VV   F NYL               T  G   ++AV    + V  P  +S  E + LP A +TA   L    G K        N+LV   +GGV  +A+Q A     +VT +  +    EF K LGA   ++Y KTP  A+
Sbjct:   13 GFDQLKPEEYEVPQKLNPGEVLVKLKAASLNYRDLIITKG-LYP-LPLQLPVVPGSDGAGIIEKVGEDVEGFEKGDSVVCNFFTNYLDGTPTDFATHSALGGTRDGCFQKYAVLPAHALVHAPKNLSFEEIATLPCAAVTAWNGLF---GSKEHQVKPGNNVLVLG-TGGVSTFALQFALAAGANVTVTSSSDEKLEFAKKLGATHTINYKKTPQWAS 224          
The following BLAST results are available for this feature:
BLAST of CK939318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
ZDH1_STAAN1.788e-1227.89Zinc-type alcohol dehydrogenase-like protein SA198... [more]
ZDH1_STAAM1.788e-1227.89Zinc-type alcohol dehydrogenase-like protein SAV21... [more]
ZDH1_STAES1.159e-1127.72Zinc-type alcohol dehydrogenase-like protein SE_17... [more]
ZDH1_STAEQ1.514e-1127.72Zinc-type alcohol dehydrogenase-like protein SERP1... [more]
YGD6_SCHPO4.405e-1132.57Zinc-type alcohol dehydrogenase-like protein C1773... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_C04 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_C04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939318 ID=CK939318; Name=CK939318; organism=Citrus sinensis; type=EST; length=763bp
GGGGACGCTGTCACTGCGTTACATACATATTATAATCGTATGCAGAGTGG
TCTCTTTGATTCTATCGATAGCACACTCGAAATCCCAGAAACGGCATCGT
GTATTAGCTGTGAAAATGGCAGGAAAGCCTCTTATGCACGCGGTTCAGTA
TAATTCTTATGGTGGAGGAGCTGCTGATTTGAAGCATGTTGAACTGTCGG
TTCCTACCCCAAGCAAAGATGAGGTTTTGCCTAAACTTGAAGCAACCGCT
CTAAATCCGGTTGACTGGAAAGTCCAGAAGGGCCAGTTACGCCCTTTTTT
GCCTCGCAAGTTTCCTTGCATACCTGCAACTGATGTAGCAGGAGAGGTCG
TAGGGGTAGGATCAGAAGTTAAAATTTTCAAAGCTGGTGACAAAGTTGTA
GCTTTTCTTAACTACCTCGTAACTAATGGAGGTGGACTAGCTGAGTTTGC
TGTGGCTAAGGAGAGCTCGACAGTTACCAGGCCACCAGAGGTTTCAGCAG
CTGAAGGTTCTGGCTTACCTGTTGCTGGTCTCACTGCTCACCAGGCCCTT
ACTCAATCTGCAGGTGTCAAGCTTGATGGAAGTGGGCAACAGAAAAACAT
TCTAGTAACTGCCGCCTCAGGGGGTGTAGGTCACTATGCTGTTCAGTTGG
CGAAGCTTGGAAACACGCACGTGACTGCCTCTTGTGGGGCTCGCAANNNN
GAATTTGTCAAGAGTTTAGGGGCTGATGNGGTTCTTGATTACAAGACACC
TGACGGGGCAGCT
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