CK939315
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK939315 vs. ExPASy Swiss-Prot
Match: RS12_RAT (40S ribosomal protein S12 OS=Rattus norvegicus GN=Rps12 PE=1 SV=2) HSP 1 Score: 119.398 bits (298), Expect = 9.680e-27 Identity = 53/91 (58.24%), Postives = 70/91 (76.92%), Query Frame = 1 Query: 1 AKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCAVVKDFGEESDGLNVVQQHIK 273 AK ++K A LCVLA +C++P YVKLV+AL A+H ++L+ V K LGEW GLCKID EGK RKVVGCSC VVKD+G+ES +V++++ K Sbjct: 39 AKALDKRQAHLCVLASNCDEPMYVKLVEALLAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129
BLAST of CK939315 vs. ExPASy Swiss-Prot
Match: RS12_MOUSE (40S ribosomal protein S12 OS=Mus musculus GN=Rps12 PE=1 SV=2) HSP 1 Score: 119.398 bits (298), Expect = 9.680e-27 Identity = 53/91 (58.24%), Postives = 70/91 (76.92%), Query Frame = 1 Query: 1 AKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCAVVKDFGEESDGLNVVQQHIK 273 AK ++K A LCVLA +C++P YVKLV+AL A+H ++L+ V K LGEW GLCKID EGK RKVVGCSC VVKD+G+ES +V++++ K Sbjct: 39 AKALDKRQAHLCVLASNCDEPMYVKLVEALLAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129
BLAST of CK939315 vs. ExPASy Swiss-Prot
Match: RS12_DROME (40S ribosomal protein S12 OS=Drosophila melanogaster GN=RpS12 PE=2 SV=2) HSP 1 Score: 114.39 bits (285), Expect = 3.114e-25 Identity = 51/92 (55.43%), Postives = 68/92 (73.91%), Query Frame = 1 Query: 4 KVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCAVVKDFGEESDGLNVVQQHIKSH 279 K ++K A LC+LAE ++P+Y KLV ALC +H + L+ V S K LGEW+GLCKID EGK RKV GCS V+KDFGEE+ L+VV+ H++ + Sbjct: 47 KALDKRQAVLCILAESFDEPNYKKLVTALCNEHQIPLIRVDSHKKLGEWSGLCKIDKEGKPRKVCGCSVVVIKDFGEETPALDVVKDHLRQN 138
BLAST of CK939315 vs. ExPASy Swiss-Prot
Match: RS12_DICDI (40S ribosomal protein S12 OS=Dictyostelium discoideum GN=rps12 PE=1 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 2.232e-23 Identity = 47/89 (52.81%), Postives = 66/89 (74.16%), Query Frame = 1 Query: 4 KVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCAVVKDFGEESDGLNVVQQHI 270 K ++K A+LCVLA +C++P++V+LVKAL +HN+ L+ VP K LGEWAGLCK+D + ARKVV CS V+K FG+ESD + ++I Sbjct: 45 KALDKRTARLCVLASNCDEPNFVRLVKALATEHNIPLIEVPDNKALGEWAGLCKLDKDLAARKVVACSTLVIKTFGKESDDYKFLMEYI 133
BLAST of CK939315 vs. ExPASy Swiss-Prot
Match: RS12_CAEEL (40S ribosomal protein S12 OS=Caenorhabditis elegans GN=rps-12 PE=2 SV=2) HSP 1 Score: 105.531 bits (262), Expect = 1.447e-22 Identity = 47/91 (51.65%), Postives = 63/91 (69.23%), Query Frame = 1 Query: 4 KVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCAVVKDFGEESDGLNVVQQHIKS 276 K ++K A CVLAE+C++P YVKLV+ LCA+H + L+ V K +GE+ GLCK D EGKARKVVGCS AVV ++G E G ++ + S Sbjct: 48 KALDKREAHFCVLAENCDEPQYVKLVETLCAEHQIPLIKVADKKIIGEYCGLCKYDKEGKARKVVGCSSAVVTNWGNEEQGRAILTDYFAS 138
BLAST of CK939315 vs. ExPASy Swiss-Prot
Match: RS12A_SCHPO (40S ribosomal protein S12-A OS=Schizosaccharomyces pombe GN=rps12a PE=2 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.225e-21 Identity = 46/83 (55.42%), Postives = 58/83 (69.88%), Query Frame = 1 Query: 1 AKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCAVVKDFGEESDGL 249 +K +++ A LCVL E C+Q YVKLV+ALCA+ L+ V K LGEWAGLC +D +G ARKVVGCSC V D+GE+S L Sbjct: 54 SKALDRRQAHLCVLCESCDQEAYVKLVEALCAESETPLIKVADPKVLGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSAAL 136
BLAST of CK939315 vs. ExPASy Swiss-Prot
Match: RS12_ERYGR (40S ribosomal protein S12 OS=Erysiphe graminis subsp. hordei GN=RPS12 PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 2.089e-21 Identity = 44/80 (55.00%), Postives = 58/80 (72.50%), Query Frame = 1 Query: 1 AKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCAVVKDFGEES 240 +K +++ A +CVL E C + Y KL+ ALC++H + L+ VP K LGEWAGLC +D EG ARKVV CSC VVK++GEES Sbjct: 39 SKALDRREAHMCVLNEACEEEAYKKLIVALCSEHKIPLIKVPDGKQLGEWAGLCVLDREGNARKVVNCSCVVVKNWGEES 118
BLAST of CK939315 vs. ExPASy Swiss-Prot
Match: RS12B_SCHPO (40S ribosomal protein S12-B OS=Schizosaccharomyces pombe GN=rps12b PE=2 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 2.089e-21 Identity = 46/86 (53.49%), Postives = 59/86 (68.60%), Query Frame = 1 Query: 1 AKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCAVVKDFGEESDGLNVV 258 +K +++ A LCVL E C+Q YVKLV+ALCA+ L+ V K LGEWAGLC +D +G ARKVVGCSC V D+GE+S L + Sbjct: 57 SKALDRRQAHLCVLCESCDQEAYVKLVEALCAESQTPLVKVADPKILGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSVALQTL 142
BLAST of CK939315 vs. ExPASy Swiss-Prot
Match: RS12_PLAF7 (40S ribosomal protein S12 OS=Plasmodium falciparum (isolate 3D7) GN=RPS12 PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 4.507e-16 Identity = 39/80 (48.75%), Postives = 55/80 (68.75%), Query Frame = 1 Query: 4 KVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPS-AKTLGEWAGLCKIDSEGKARKVVGCSCAVVKDFGEES 240 K IE A++C L++ C++P Y KL+ LCA+ N+ L V + +K LG WAGL K+D+EG ARK++G S V DFGE+S Sbjct: 47 KSIESQEAKVCFLSDVCSEPAYKKLITTLCAEKNIPLFMVQNDSKDLGHWAGLFKLDNEGNARKIIGASSVAVVDFGEDS 126
BLAST of CK939315 vs. ExPASy Swiss-Prot
Match: RS12_TRYBB (40S ribosomal protein S12 OS=Trypanosoma brucei brucei GN=RPS12 PE=2 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 2.921e-15 Identity = 33/90 (36.67%), Postives = 57/90 (63.33%), Query Frame = 1 Query: 4 KVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCAVVKDFGEESDGLNVVQQHIK 273 + +++ A LCVLA+DC +Y KLV AL +N+ L+++ + L +WAGL ++ ++G RK + CSC V+DFGE + L+ + ++ Sbjct: 55 RALDRRTAHLCVLADDCEDEEYKKLVTALAKQNNIDLVSMDEREKLAQWAGLTRMAADGSVRKTLKCSCLAVRDFGERTKALDYLLSQLQ 144 The following BLAST results are available for this feature:
BLAST of CK939315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 21
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939315 ID=CK939315; Name=CK939315; organism=Citrus sinensis; type=EST; length=510bpback to top |