CK939315

Overview
NameCK939315
Unique NameCK939315
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length510
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9461 contig Csv1_Contig9461:252..761. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939315 vs. ExPASy Swiss-Prot
Match: RS12_RAT (40S ribosomal protein S12 OS=Rattus norvegicus GN=Rps12 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 9.680e-27
Identity = 53/91 (58.24%), Postives = 70/91 (76.92%), Query Frame = 1
Query:    1 AKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCAVVKDFGEESDGLNVVQQHIK 273
            AK ++K  A LCVLA +C++P YVKLV+AL A+H ++L+ V   K LGEW GLCKID EGK RKVVGCSC VVKD+G+ES   +V++++ K
Sbjct:   39 AKALDKRQAHLCVLASNCDEPMYVKLVEALLAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129          
BLAST of CK939315 vs. ExPASy Swiss-Prot
Match: RS12_MOUSE (40S ribosomal protein S12 OS=Mus musculus GN=Rps12 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 9.680e-27
Identity = 53/91 (58.24%), Postives = 70/91 (76.92%), Query Frame = 1
Query:    1 AKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCAVVKDFGEESDGLNVVQQHIK 273
            AK ++K  A LCVLA +C++P YVKLV+AL A+H ++L+ V   K LGEW GLCKID EGK RKVVGCSC VVKD+G+ES   +V++++ K
Sbjct:   39 AKALDKRQAHLCVLASNCDEPMYVKLVEALLAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129          
BLAST of CK939315 vs. ExPASy Swiss-Prot
Match: RS12_DROME (40S ribosomal protein S12 OS=Drosophila melanogaster GN=RpS12 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 3.114e-25
Identity = 51/92 (55.43%), Postives = 68/92 (73.91%), Query Frame = 1
Query:    4 KVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCAVVKDFGEESDGLNVVQQHIKSH 279
            K ++K  A LC+LAE  ++P+Y KLV ALC +H + L+ V S K LGEW+GLCKID EGK RKV GCS  V+KDFGEE+  L+VV+ H++ +
Sbjct:   47 KALDKRQAVLCILAESFDEPNYKKLVTALCNEHQIPLIRVDSHKKLGEWSGLCKIDKEGKPRKVCGCSVVVIKDFGEETPALDVVKDHLRQN 138          
BLAST of CK939315 vs. ExPASy Swiss-Prot
Match: RS12_DICDI (40S ribosomal protein S12 OS=Dictyostelium discoideum GN=rps12 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.232e-23
Identity = 47/89 (52.81%), Postives = 66/89 (74.16%), Query Frame = 1
Query:    4 KVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCAVVKDFGEESDGLNVVQQHI 270
            K ++K  A+LCVLA +C++P++V+LVKAL  +HN+ L+ VP  K LGEWAGLCK+D +  ARKVV CS  V+K FG+ESD    + ++I
Sbjct:   45 KALDKRTARLCVLASNCDEPNFVRLVKALATEHNIPLIEVPDNKALGEWAGLCKLDKDLAARKVVACSTLVIKTFGKESDDYKFLMEYI 133          
BLAST of CK939315 vs. ExPASy Swiss-Prot
Match: RS12_CAEEL (40S ribosomal protein S12 OS=Caenorhabditis elegans GN=rps-12 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 1.447e-22
Identity = 47/91 (51.65%), Postives = 63/91 (69.23%), Query Frame = 1
Query:    4 KVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCAVVKDFGEESDGLNVVQQHIKS 276
            K ++K  A  CVLAE+C++P YVKLV+ LCA+H + L+ V   K +GE+ GLCK D EGKARKVVGCS AVV ++G E  G  ++  +  S
Sbjct:   48 KALDKREAHFCVLAENCDEPQYVKLVETLCAEHQIPLIKVADKKIIGEYCGLCKYDKEGKARKVVGCSSAVVTNWGNEEQGRAILTDYFAS 138          
BLAST of CK939315 vs. ExPASy Swiss-Prot
Match: RS12A_SCHPO (40S ribosomal protein S12-A OS=Schizosaccharomyces pombe GN=rps12a PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.225e-21
Identity = 46/83 (55.42%), Postives = 58/83 (69.88%), Query Frame = 1
Query:    1 AKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCAVVKDFGEESDGL 249
            +K +++  A LCVL E C+Q  YVKLV+ALCA+    L+ V   K LGEWAGLC +D +G ARKVVGCSC  V D+GE+S  L
Sbjct:   54 SKALDRRQAHLCVLCESCDQEAYVKLVEALCAESETPLIKVADPKVLGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSAAL 136          
BLAST of CK939315 vs. ExPASy Swiss-Prot
Match: RS12_ERYGR (40S ribosomal protein S12 OS=Erysiphe graminis subsp. hordei GN=RPS12 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.089e-21
Identity = 44/80 (55.00%), Postives = 58/80 (72.50%), Query Frame = 1
Query:    1 AKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCAVVKDFGEES 240
            +K +++  A +CVL E C +  Y KL+ ALC++H + L+ VP  K LGEWAGLC +D EG ARKVV CSC VVK++GEES
Sbjct:   39 SKALDRREAHMCVLNEACEEEAYKKLIVALCSEHKIPLIKVPDGKQLGEWAGLCVLDREGNARKVVNCSCVVVKNWGEES 118          
BLAST of CK939315 vs. ExPASy Swiss-Prot
Match: RS12B_SCHPO (40S ribosomal protein S12-B OS=Schizosaccharomyces pombe GN=rps12b PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.089e-21
Identity = 46/86 (53.49%), Postives = 59/86 (68.60%), Query Frame = 1
Query:    1 AKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCAVVKDFGEESDGLNVV 258
            +K +++  A LCVL E C+Q  YVKLV+ALCA+    L+ V   K LGEWAGLC +D +G ARKVVGCSC  V D+GE+S  L  +
Sbjct:   57 SKALDRRQAHLCVLCESCDQEAYVKLVEALCAESQTPLVKVADPKILGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSVALQTL 142          
BLAST of CK939315 vs. ExPASy Swiss-Prot
Match: RS12_PLAF7 (40S ribosomal protein S12 OS=Plasmodium falciparum (isolate 3D7) GN=RPS12 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.507e-16
Identity = 39/80 (48.75%), Postives = 55/80 (68.75%), Query Frame = 1
Query:    4 KVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPS-AKTLGEWAGLCKIDSEGKARKVVGCSCAVVKDFGEES 240
            K IE   A++C L++ C++P Y KL+  LCA+ N+ L  V + +K LG WAGL K+D+EG ARK++G S   V DFGE+S
Sbjct:   47 KSIESQEAKVCFLSDVCSEPAYKKLITTLCAEKNIPLFMVQNDSKDLGHWAGLFKLDNEGNARKIIGASSVAVVDFGEDS 126          
BLAST of CK939315 vs. ExPASy Swiss-Prot
Match: RS12_TRYBB (40S ribosomal protein S12 OS=Trypanosoma brucei brucei GN=RPS12 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 2.921e-15
Identity = 33/90 (36.67%), Postives = 57/90 (63.33%), Query Frame = 1
Query:    4 KVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCAVVKDFGEESDGLNVVQQHIK 273
            + +++  A LCVLA+DC   +Y KLV AL   +N+ L+++   + L +WAGL ++ ++G  RK + CSC  V+DFGE +  L+ +   ++
Sbjct:   55 RALDRRTAHLCVLADDCEDEEYKKLVTALAKQNNIDLVSMDEREKLAQWAGLTRMAADGSVRKTLKCSCLAVRDFGERTKALDYLLSQLQ 144          
The following BLAST results are available for this feature:
BLAST of CK939315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RS12_RAT9.680e-2758.2440S ribosomal protein S12 OS=Rattus norvegicus GN=... [more]
RS12_MOUSE9.680e-2758.2440S ribosomal protein S12 OS=Mus musculus GN=Rps12... [more]
RS12_DROME3.114e-2555.4340S ribosomal protein S12 OS=Drosophila melanogast... [more]
RS12_DICDI2.232e-2352.8140S ribosomal protein S12 OS=Dictyostelium discoid... [more]
RS12_CAEEL1.447e-2251.6540S ribosomal protein S12 OS=Caenorhabditis elegan... [more]
RS12A_SCHPO1.225e-2155.4240S ribosomal protein S12-A OS=Schizosaccharomyces... [more]
RS12_ERYGR2.089e-2155.0040S ribosomal protein S12 OS=Erysiphe graminis sub... [more]
RS12B_SCHPO2.089e-2153.4940S ribosomal protein S12-B OS=Schizosaccharomyces... [more]
RS12_PLAF74.507e-1648.7540S ribosomal protein S12 OS=Plasmodium falciparum... [more]
RS12_TRYBB2.921e-1536.6740S ribosomal protein S12 OS=Trypanosoma brucei br... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_B02 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939315 ID=CK939315; Name=CK939315; organism=Citrus sinensis; type=EST; length=510bp
GCCAAAGTGATTGAAAAGCATGCTGCCCAGCTCTGTGTATTGGCTGAGGA
TTGTAACCAACCTGACTATGTGAAATTGGTCAAGGCACTCTGTGCTGACC
ATAACGTAAGCTTGTTGACGGTTCCCAGTGCCAAGACCCTCGGCGAGTGG
GCTGGTTTGTGCAAGATTGACTCAGAGGGAAAGGCCAGGAAGGTTGTGGG
TTGTTCCTGTGCTGTTGTGAAGGATTTCGGAGAGGAAAGCGATGGTCTTA
ACGTTGTTCAGCAGCACATCAAGTCTCACTGAGTAGCAGTGATGGATTCG
TAGTTCAACTTTTATATTTATAGAGAGGGCCTTGTCTTTTTTCTGTCAAA
TTGTGTTTGGTTGTCTCACTCCAAGGAGATTTTGTGTTCGTTAGTTGCTA
TTACTTTTAGTACTTTTGTNNNNCAATCCTTTATTGCAACTGAAAACATC
AATCCTTTTCTATATTTTTGCTGNNNTGAATCTTTTCAAAANNAAAAAAA
AAAAAAAAAA
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