CK939315

Overview
NameCK939315
Unique NameCK939315
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length510
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK939315 vs. ExPASy Swiss-Prot
Match: RS12_YEAST (40S ribosomal protein S12 OS=Saccharomyces cerevisiae GN=RPS12 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.894e-14
Identity = 42/90 (46.67%), Postives = 57/90 (63.33%), Query Frame = 1 
Query:    4 KVIEKHAAQLCVLAEDCNQPDYVKLVKALCAD--HNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCAVVKDFGEESDGLNVVQQH 267
            K + +  A L VL     + + +KLV+ L  D  + V L+ V  AK LGEWAGL KID EG ARKVVG S  VVK++G E+D L+++ +H
Sbjct:   50 KALTRGEALLVVLVSSVTEANIIKLVEGLANDPENKVPLIKVADAKQLGEWAGLGKIDREGNARKVVGASVVVVKNWGAETDELSMIMEH 139
The following BLAST results are available for this feature:
BLAST of CK939315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RS12_YEAST1.894e-1446.6740S ribosomal protein S12 OS=Saccharomyces cerevis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004752_B02 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939315 ID=CK939315; Name=CK939315; organism=Citrus sinensis; type=EST; length=510bp
GCCAAAGTGATTGAAAAGCATGCTGCCCAGCTCTGTGTATTGGCTGAGGA
TTGTAACCAACCTGACTATGTGAAATTGGTCAAGGCACTCTGTGCTGACC
ATAACGTAAGCTTGTTGACGGTTCCCAGTGCCAAGACCCTCGGCGAGTGG
GCTGGTTTGTGCAAGATTGACTCAGAGGGAAAGGCCAGGAAGGTTGTGGG
TTGTTCCTGTGCTGTTGTGAAGGATTTCGGAGAGGAAAGCGATGGTCTTA
ACGTTGTTCAGCAGCACATCAAGTCTCACTGAGTAGCAGTGATGGATTCG
TAGTTCAACTTTTATATTTATAGAGAGGGCCTTGTCTTTTTTCTGTCAAA
TTGTGTTTGGTTGTCTCACTCCAAGGAGATTTTGTGTTCGTTAGTTGCTA
TTACTTTTAGTACTTTTGTNNNNCAATCCTTTATTGCAACTGAAAACATC
AATCCTTTTCTATATTTTTGCTGNNNTGAATCTTTTCAAAANNAAAAAAA
AAAAAAAAAA
back to top