CK939312

Overview
NameCK939312
Unique NameCK939312
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1638 contig Csv1_Contig1638:1..461. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CK939312 vs. ExPASy Swiss-Prot
Match: RL39_CHICK (60S ribosomal protein L39 OS=Gallus gallus GN=RPL39 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.723e-17
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 2
Query:   74 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 223
            M SHKTF IK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHWRRTKLG
Sbjct:    1 MSSHKTFKIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 50          
BLAST of CK939312 vs. ExPASy Swiss-Prot
Match: RL39_CANAL (60S ribosomal protein L39 OS=Candida albicans GN=RPL39 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.723e-17
Identity = 38/50 (76.00%), Postives = 43/50 (86.00%), Query Frame = 2
Query:   74 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 223
            MPS K+F  K+KLAK  +QNRP+P WIR+RTDN IRYNAKRRHWRRTKLG
Sbjct:    1 MPSQKSFRTKQKLAKAQKQNRPLPQWIRLRTDNKIRYNAKRRHWRRTKLG 50          
BLAST of CK939312 vs. ExPASy Swiss-Prot
Match: RL39_BOVIN (60S ribosomal protein L39 OS=Bos taurus GN=RPL39 PE=3 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 2.723e-17
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 2
Query:   74 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 223
            M SHKTF IK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHWRRTKLG
Sbjct:    1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 50          
BLAST of CK939312 vs. ExPASy Swiss-Prot
Match: R39L5_HUMAN (Putative 60S ribosomal protein L39-like 5 OS=Homo sapiens GN=RPL39P5 PE=5 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 7.923e-17
Identity = 38/50 (76.00%), Postives = 43/50 (86.00%), Query Frame = 2
Query:   74 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 223
            M SHKTF IK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHW+RTKLG
Sbjct:    1 MSSHKTFKIKQFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWKRTKLG 50          
BLAST of CK939312 vs. ExPASy Swiss-Prot
Match: RL39_DROME (60S ribosomal protein L39 OS=Drosophila melanogaster GN=RpL39 PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.035e-16
Identity = 36/49 (73.47%), Postives = 44/49 (89.80%), Query Frame = 2
Query:   74 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 220
            M +HK+F IK+KLAKK++QNR +P W+R+RT NTIRYNAKRRHWRRTKL
Sbjct:    1 MAAHKSFRIKQKLAKKLKQNRSVPQWVRLRTGNTIRYNAKRRHWRRTKL 49          
BLAST of CK939312 vs. ExPASy Swiss-Prot
Match: RL39_SCHPO (60S ribosomal protein L39 OS=Schizosaccharomyces pombe GN=rpl39 PE=2 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 1.351e-16
Identity = 37/49 (75.51%), Postives = 41/49 (83.67%), Query Frame = 2
Query:   74 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 220
            MPSHK+F  K+KLAK  RQNRPIP WIR+RT NT+ YN KRRHWRRTKL
Sbjct:    1 MPSHKSFRTKQKLAKAARQNRPIPQWIRLRTGNTVHYNMKRRHWRRTKL 49          
BLAST of CK939312 vs. ExPASy Swiss-Prot
Match: RL39_DEBHA (60S ribosomal protein L39 OS=Debaryomyces hansenii GN=RPL39 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.136e-16
Identity = 36/49 (73.47%), Postives = 42/49 (85.71%), Query Frame = 2
Query:   74 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 220
            MPS K+F  K+KLAK  +QNRP+P WIR+R+ NTIRYNAKRRHWRRTKL
Sbjct:    1 MPSQKSFRTKQKLAKAQKQNRPLPQWIRLRSGNTIRYNAKRRHWRRTKL 49          
BLAST of CK939312 vs. ExPASy Swiss-Prot
Match: RL39L_HUMAN (60S ribosomal protein L39-like OS=Homo sapiens GN=RPL39L PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 1.494e-15
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = 2
Query:   74 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 223
            M SHKTF IK+ LAKK +QNRPIP WI+M+  + IRYN+KRRHWRRTKLG
Sbjct:    1 MSSHKTFTIKRFLAKKQKQNRPIPQWIQMKPGSKIRYNSKRRHWRRTKLG 50          
BLAST of CK939312 vs. ExPASy Swiss-Prot
Match: RL39_ASHGO (60S ribosomal protein L39 OS=Ashbya gossypii GN=RPL39 PE=3 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 3.329e-15
Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = 2
Query:   74 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 223
            M + K+F IK+KLAK   QNRP+P W R++T+NTIRYNAKRRHWRRTK+G
Sbjct:    1 MAAKKSFKIKQKLAKAKNQNRPLPQWFRLKTNNTIRYNAKRRHWRRTKMG 50          
BLAST of CK939312 vs. ExPASy Swiss-Prot
Match: RL39_KLUMA (60S ribosomal protein L39 OS=Kluyveromyces marxianus GN=RPL39 PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 5.678e-15
Identity = 34/49 (69.39%), Postives = 42/49 (85.71%), Query Frame = 2
Query:   74 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 220
            M + K+F+IK+KLAK   QNRP+P W R++T+NTIRYNAKRRHWRRTKL
Sbjct:    1 MAAKKSFIIKQKLAKAKNQNRPLPQWFRLKTNNTIRYNAKRRHWRRTKL 49          
The following BLAST results are available for this feature:
BLAST of CK939312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RL39_CHICK2.723e-1778.0060S ribosomal protein L39 OS=Gallus gallus GN=RPL3... [more]
RL39_CANAL2.723e-1776.0060S ribosomal protein L39 OS=Candida albicans GN=R... [more]
RL39_BOVIN2.723e-1778.0060S ribosomal protein L39 OS=Bos taurus GN=RPL39 P... [more]
R39L5_HUMAN7.923e-1776.00Putative 60S ribosomal protein L39-like 5 OS=Homo ... [more]
RL39_DROME1.035e-1673.4760S ribosomal protein L39 OS=Drosophila melanogast... [more]
RL39_SCHPO1.351e-1675.5160S ribosomal protein L39 OS=Schizosaccharomyces p... [more]
RL39_DEBHA5.136e-1673.4760S ribosomal protein L39 OS=Debaryomyces hansenii... [more]
RL39L_HUMAN1.494e-1572.0060S ribosomal protein L39-like OS=Homo sapiens GN=... [more]
RL39_ASHGO3.329e-1568.0060S ribosomal protein L39 OS=Ashbya gossypii GN=RP... [more]
RL39_KLUMA5.678e-1569.3960S ribosomal protein L39 OS=Kluyveromyces marxian... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004752_B04 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939312 ID=CK939312; Name=CK939312; organism=Citrus sinensis; type=EST; length=486bp
AGGGACACATCGTTCAATCTCAGGATTTTACAACTAGGGTTTTCGCTGCA
GCCGATCGAACTAAGAAGCGAAAATGCCGTCACACAAGACATTTATGATC
AAGAAGAAGCTTGCCAAGAAGATGAGGCAAAACAGGCCCATCCCTCACTG
GATCCGTATGCGCACCGACAACACCATCAGATACAACGCAAAGCGCAGGC
ACTGGCGCCGCACAAAGCTTGGATTCTAAGGTGTTTAGGATCAGATGGAT
TTGTTGTTGAGTTTGTTTTAAGCTTATGTTCGAGTAATTTAGACTATGAT
ACCTGGCCTTATGTTTTATATTTAGTTTTGAGAAACTCATTTGTATAAGG
AACTCATTGAGAGTCCTTATTTTATTTTGTGCCCTCTTGAGTTAATTTGG
ACTTATGAAATTTGACTTGTTTCGATCAAAAAAAAAAAAAAAAAAAAAAA
AAAAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top