CK939312

Overview
NameCK939312
Unique NameCK939312
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1638 contig Csv1_Contig1638:1..461. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of CK939312 vs. ExPASy Swiss-Prot
Match: RL39_KLULA (60S ribosomal protein L39 OS=Kluyveromyces lactis GN=RPL39 PE=3 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 7.416e-15
Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = 2 
Query:   74 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 223
            M + K+F+IK+KLAK   QNRP+P W R++T+N IRYNAKRRHWRRTKLG
Sbjct:    1 MAAKKSFIIKQKLAKAKNQNRPLPQWYRLKTNNKIRYNAKRRHWRRTKLG 50
[Close]
BLAST of CK939312 vs. ExPASy Swiss-Prot
Match: RL39_YEAST (60S ribosomal protein L39 OS=Saccharomyces cerevisiae GN=RPL39 PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 1.265e-14
Identity = 33/49 (67.35%), Postives = 43/49 (87.76%), Query Frame = 2 
Query:   74 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 220
            M + K+F IK+K+AK  +QNRP+P WIR+RT+NTIRYNAKRR+WRRTK+
Sbjct:    1 MAAQKSFRIKQKMAKAKKQNRPLPQWIRLRTNNTIRYNAKRRNWRRTKM 49
[Close]
BLAST of CK939312 vs. ExPASy Swiss-Prot
Match: RL39_CAEEL (60S ribosomal protein L39 OS=Caenorhabditis elegans GN=rpl-39 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.818e-14
Identity = 33/49 (67.35%), Postives = 41/49 (83.67%), Query Frame = 2 
Query:   74 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 220
            M + K   IK+KLAKK +QNRP+P W+RM+T NT++YNAKRRHWRRTKL
Sbjct:    1 MSALKKSFIKRKLAKKQKQNRPMPQWVRMKTGNTMKYNAKRRHWRRTKL 49
The following BLAST results are available for this feature:
BLAST of CK939312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RL39_KLULA7.416e-1568.0060S ribosomal protein L39 OS=Kluyveromyces lactis ... [more]
RL39_YEAST1.265e-1467.3560S ribosomal protein L39 OS=Saccharomyces cerevis... [more]
RL39_CAEEL2.818e-1467.3560S ribosomal protein L39 OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_B04 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939312 ID=CK939312; Name=CK939312; organism=Citrus sinensis; type=EST; length=486bp
AGGGACACATCGTTCAATCTCAGGATTTTACAACTAGGGTTTTCGCTGCA
GCCGATCGAACTAAGAAGCGAAAATGCCGTCACACAAGACATTTATGATC
AAGAAGAAGCTTGCCAAGAAGATGAGGCAAAACAGGCCCATCCCTCACTG
GATCCGTATGCGCACCGACAACACCATCAGATACAACGCAAAGCGCAGGC
ACTGGCGCCGCACAAAGCTTGGATTCTAAGGTGTTTAGGATCAGATGGAT
TTGTTGTTGAGTTTGTTTTAAGCTTATGTTCGAGTAATTTAGACTATGAT
ACCTGGCCTTATGTTTTATATTTAGTTTTGAGAAACTCATTTGTATAAGG
AACTCATTGAGAGTCCTTATTTTATTTTGTGCCCTCTTGAGTTAATTTGG
ACTTATGAAATTTGACTTGTTTCGATCAAAAAAAAAAAAAAAAAAAAAAA
AAAAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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