CK939311

Overview
NameCK939311
Unique NameCK939311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length255
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9788 contig Csv1_Contig9788:153..407. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939311 vs. ExPASy Swiss-Prot
Match: RS18_MOUSE (40S ribosomal protein S18 OS=Mus musculus GN=Rps18 PE=2 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 1.253e-26
Identity = 51/84 (60.71%), Postives = 72/84 (85.71%), Query Frame = 3
Query:    3 NTNVHGKQRIMCALTSIKGIGRRXANIVCKKADIDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS 254
            NTN+ G+++I  A+T+IKG+GRR A++V +KADID+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++
Sbjct:   17 NTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLA 100          
BLAST of CK939311 vs. ExPASy Swiss-Prot
Match: RS18_HUMAN (40S ribosomal protein S18 OS=Homo sapiens GN=RPS18 PE=1 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 1.253e-26
Identity = 51/84 (60.71%), Postives = 72/84 (85.71%), Query Frame = 3
Query:    3 NTNVHGKQRIMCALTSIKGIGRRXANIVCKKADIDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS 254
            NTN+ G+++I  A+T+IKG+GRR A++V +KADID+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++
Sbjct:   17 NTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLA 100          
BLAST of CK939311 vs. ExPASy Swiss-Prot
Match: RS18_CAPHI (40S ribosomal protein S18 OS=Capra hircus GN=RPS18 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.253e-26
Identity = 51/84 (60.71%), Postives = 72/84 (85.71%), Query Frame = 3
Query:    3 NTNVHGKQRIMCALTSIKGIGRRXANIVCKKADIDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS 254
            NTN+ G+++I  A+T+IKG+GRR A++V +KADID+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++
Sbjct:   17 NTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLA 100          
BLAST of CK939311 vs. ExPASy Swiss-Prot
Match: RS18_CANFA (40S ribosomal protein S18 OS=Canis familiaris GN=RPS18 PE=1 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 1.253e-26
Identity = 51/84 (60.71%), Postives = 72/84 (85.71%), Query Frame = 3
Query:    3 NTNVHGKQRIMCALTSIKGIGRRXANIVCKKADIDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS 254
            NTN+ G+++I  A+T+IKG+GRR A++V +KADID+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++
Sbjct:   17 NTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLA 100          
BLAST of CK939311 vs. ExPASy Swiss-Prot
Match: RS18_BOVIN (40S ribosomal protein S18 OS=Bos taurus GN=RPS18 PE=2 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 1.253e-26
Identity = 51/84 (60.71%), Postives = 72/84 (85.71%), Query Frame = 3
Query:    3 NTNVHGKQRIMCALTSIKGIGRRXANIVCKKADIDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS 254
            NTN+ G+++I  A+T+IKG+GRR A++V +KADID+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++
Sbjct:   17 NTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLA 100          
BLAST of CK939311 vs. ExPASy Swiss-Prot
Match: RS18_DICDI (40S ribosomal protein S18 OS=Dictyostelium discoideum GN=rps18 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.061e-25
Identity = 52/84 (61.90%), Postives = 67/84 (79.76%), Query Frame = 3
Query:    3 NTNVHGKQRIMCALTSIKGIGRRXANIVCKKADIDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS 254
            NTNV G+++I  ALT +KG+GRR AN+VCKKADID +KRAGELS  E++ L  ++ +PRQ+ IP WFLNRQKD KDGKYS  ++
Sbjct:   19 NTNVDGRRKIQYALTCVKGVGRRFANLVCKKADIDTSKRAGELSKDEVERLTTIMNHPRQYNIPTWFLNRQKDIKDGKYSHCLA 102          
BLAST of CK939311 vs. ExPASy Swiss-Prot
Match: RS18_DROME (40S ribosomal protein S18 OS=Drosophila melanogaster GN=RpS18 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.001e-24
Identity = 47/84 (55.95%), Postives = 68/84 (80.95%), Query Frame = 3
Query:    3 NTNVHGKQRIMCALTSIKGIGRRXANIVCKKADIDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS 254
            NTN+ GK+++  A+T+IKG+GRR +NIV KKAD+D+ KRAGE +  E+D ++ +++NP Q+K+P+WFLNRQKD  DGKY Q+ S
Sbjct:   17 NTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECTEEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTS 100          
BLAST of CK939311 vs. ExPASy Swiss-Prot
Match: RS18_YEAST (40S ribosomal protein S18 OS=Saccharomyces cerevisiae GN=RPS18A PE=1 SV=4)

HSP 1 Score: 104.375 bits (259), Expect = 1.873e-22
Identity = 46/78 (58.97%), Postives = 62/78 (79.49%), Query Frame = 3
Query:    3 NTNVHGKQRIMCALTSIKGIGRRXANIVCKKADIDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGK 236
            NTNV G  +I+ ALT+IKG+GRR +N+VCKKAD+D++KRAGEL+  EL+ ++ ++ NP  +KIP WFLNRQ D  DGK
Sbjct:   19 NTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNPTHYKIPAWFLNRQNDITDGK 96          
BLAST of CK939311 vs. ExPASy Swiss-Prot
Match: RS18_ENTHI (40S ribosomal protein S18 OS=Entamoeba histolytica GN=RPS18 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.289e-20
Identity = 44/84 (52.38%), Postives = 64/84 (76.19%), Query Frame = 3
Query:    3 NTNVHGKQRIMCALTSIKGIGRRXANIVCKKADIDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS 254
            NTN+ G++++  ALT IKG GRR A +VCK+A ID+NKRAG ++ AE++ ++ ++     +KIP WFLNRQKD KDGK SQ+++
Sbjct:   18 NTNLDGRRKVPYALTGIKGCGRRYAYLVCKRAGIDVNKRAGLMTPAEIEKIVDILTTQLNYKIPVWFLNRQKDNKDGKDSQLIA 101          
BLAST of CK939311 vs. ExPASy Swiss-Prot
Match: RS18_ENCCU (40S ribosomal protein S18 OS=Encephalitozoon cuniculi GN=RPS18 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.540e-13
Identity = 34/83 (40.96%), Postives = 51/83 (61.45%), Query Frame = 3
Query:    3 NTNVHGKQRIMCALTSIKGIGRRXANIVCKKADIDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVV 251
            NTN+ G +RI  ALT I+GIG R A  +CK+  ID+ KRAGE+   E+  +   + +P    IP+ ++N Q+D  DG  S ++
Sbjct:   18 NTNIDGTKRIPFALTKIRGIGIRIATAICKRLGIDLRKRAGEMGEDEMKRISDAILDPASVGIPESYMNHQRDIIDGTTSHLI 100          
The following BLAST results are available for this feature:
BLAST of CK939311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RS18_MOUSE1.253e-2660.7140S ribosomal protein S18 OS=Mus musculus GN=Rps18... [more]
RS18_HUMAN1.253e-2660.7140S ribosomal protein S18 OS=Homo sapiens GN=RPS18... [more]
RS18_CAPHI1.253e-2660.7140S ribosomal protein S18 OS=Capra hircus GN=RPS18... [more]
RS18_CANFA1.253e-2660.7140S ribosomal protein S18 OS=Canis familiaris GN=R... [more]
RS18_BOVIN1.253e-2660.7140S ribosomal protein S18 OS=Bos taurus GN=RPS18 P... [more]
RS18_DICDI1.061e-2561.9040S ribosomal protein S18 OS=Dictyostelium discoid... [more]
RS18_DROME2.001e-2455.9540S ribosomal protein S18 OS=Drosophila melanogast... [more]
RS18_YEAST1.873e-2258.9740S ribosomal protein S18 OS=Saccharomyces cerevis... [more]
RS18_ENTHI2.289e-2052.3840S ribosomal protein S18 OS=Entamoeba histolytica... [more]
RS18_ENCCU3.540e-1340.9640S ribosomal protein S18 OS=Encephalitozoon cunic... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_B03 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939311 ID=CK939311; Name=CK939311; organism=Citrus sinensis; type=EST; length=255bp
TGAACACTAACGTCCACGGGAAGCAGAGGATTATGTGTGCTCTTACTTCA
ATTAAGGGTATTGGAAGGCGNNNGGCTAATATCGTTTGCAAGAAAGCTGA
TATTGACATGAACAAGAGGGCCGGGGAACTATCTGCTGCTGAACTTGACA
ATCTCATGGTCGTTGTTGCAAATCCCCGACAGTTTAAAATCCCTGATTGG
TTCTTGAACAGACAGAAGGATTACAAGGATGGAAAGTATTCTCAGGTTGT
ATCCA
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