CK939311

Overview
NameCK939311
Unique NameCK939311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length255
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9788 contig Csv1_Contig9788:153..407. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939311 vs. ExPASy Swiss-Prot
Match: RS13_METST (30S ribosomal protein S13P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps13p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.111e-12
Identity = 30/81 (37.04%), Postives = 49/81 (60.49%), Query Frame = 3
Query:    9 NVHGKQRIMCALTSIKGIGRRXANIVCKKADIDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVV 251
            +V G   I  ALT I+GIG+  A  +CK  D+D + + G +    +  +  V+ NP++F IP+WFLNR+ DY+ G+   ++
Sbjct:   16 DVDGNSTIATALTEIRGIGKAFAIAICKVLDLDQDAQIGYIDDESVKQIEAVLENPQEFGIPEWFLNRRNDYETGETKHLI 96          
BLAST of CK939311 vs. ExPASy Swiss-Prot
Match: RS13_METTH (30S ribosomal protein S13P OS=Methanobacterium thermoautotrophicum GN=rps13p PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.327e-11
Identity = 28/81 (34.57%), Postives = 49/81 (60.49%), Query Frame = 3
Query:    9 NVHGKQRIMCALTSIKGIGRRXANIVCKKADIDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVV 251
            ++ G + +  ALTSIKG+G+  +  +   A  D+N+R G LS  E++ L   + NP ++ IP W +NR+ DY+ G+   ++
Sbjct:   15 DIDGNKTMENALTSIKGVGKALSRAIIMSAGYDLNQRIGYLSDEEIERLEEAIKNPAKYNIPSWMINRRNDYETGEDKHLI 95          
BLAST of CK939311 vs. ExPASy Swiss-Prot
Match: RS13_HYPBU (30S ribosomal protein S13P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps13p PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.381e-11
Identity = 32/77 (41.56%), Postives = 46/77 (59.74%), Query Frame = 3
Query:    6 TNVHGKQRIMCALTSIKGIGRRXANIVCKKADIDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGK 236
            T++ G  ++   L  +KGIG   A  +C+   ID NKR G L+ AE++ +   +ANP    IP W LNR+KDY+ GK
Sbjct:   16 TDIPGDLKVPYGLALVKGIGVNLAYALCRLLGIDPNKRIGFLTDAEIEKIEKAMANPLAIGIPVWMLNRRKDYETGK 92          
The following BLAST results are available for this feature:
BLAST of CK939311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RS13_METST5.111e-1237.0430S ribosomal protein S13P OS=Methanosphaera stadt... [more]
RS13_METTH4.327e-1134.5730S ribosomal protein S13P OS=Methanobacterium the... [more]
RS13_HYPBU7.381e-1141.5630S ribosomal protein S13P OS=Hyperthermus butylic... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_B03 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939311 ID=CK939311; Name=CK939311; organism=Citrus sinensis; type=EST; length=255bp
TGAACACTAACGTCCACGGGAAGCAGAGGATTATGTGTGCTCTTACTTCA
ATTAAGGGTATTGGAAGGCGNNNGGCTAATATCGTTTGCAAGAAAGCTGA
TATTGACATGAACAAGAGGGCCGGGGAACTATCTGCTGCTGAACTTGACA
ATCTCATGGTCGTTGTTGCAAATCCCCGACAGTTTAAAATCCCTGATTGG
TTCTTGAACAGACAGAAGGATTACAAGGATGGAAAGTATTCTCAGGTTGT
ATCCA
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