CK939309

Overview
NameCK939309
Unique NameCK939309
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length385
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9908 contig Csv1_Contig9908:222..606. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939309 vs. ExPASy Swiss-Prot
Match: NAC90_ARATH (NAC domain-containing protein 90 OS=Arabidopsis thaliana GN=NAC090 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.981e-19
Identity = 49/131 (37.40%), Postives = 76/131 (58.02%), Query Frame = 3
Query:   21 GFRFHPTDEELVRYYLKRK-------DCHRPLRFNPICVTDIYKSEPWDLPDKSSLKTRD--KEWYFFSMLDKKYGNGSRTNRATEKGYWKTTGKDRPV-HHNTRTVGMKKTLVYHMGRAPHGERTNWVMH 383
            GFRF+PT+EELV +YL+ +         HR      I V D+++ EP  LP+ + ++ R   ++W+FF    ++   G R +R T  GYWK TG   PV   + + +G KKT+V++ G+AP G +T W M+
Sbjct:    8 GFRFYPTEEELVSFYLRNQLEGRSDDSMHRV-----IPVLDVFEVEPSHLPNVAGVRCRGDAEQWFFFVPRQEREARGGRPSRTTGSGYWKATGSPGPVFSKDNKMIGAKKTMVFYTGKAPTGRKTKWKMN 133          
BLAST of CK939309 vs. ExPASy Swiss-Prot
Match: NAC3_ARATH (NAC domain-containing protein 3 OS=Arabidopsis thaliana GN=NAC003 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.832e-19
Identity = 46/125 (36.80%), Postives = 73/125 (58.40%), Query Frame = 3
Query:   21 GFRFHPTDEELVRYYLKRKDCHRPL----RFNPICVTDIYKSEPWDLPDKSSLKTRDKEWYFFSMLDKKYGNGSRTNRATEKGYWKTTGKDRPVHHNTRTVGMKKTLVYHMGRAPHGERTNWVMH 383
            G RF PTDEE+V  YL  K+  R      RF  I    + + +PW+LP +S +K +D  W FF   + KYG G +  R T+ G+WK+TG+ +P+  N + +G KK L+++  +     +++WV+H
Sbjct:    6 GLRFCPTDEEIVVDYLWPKNSDRDTSHVDRF--INTVPVCRLDPWELPCQSRIKLKDVAWCFFRPKENKYGRGDQQMRKTKSGFWKSTGRPKPIMRNRQQIGEKKILMFYTSKE---SKSDWVIH 125          
BLAST of CK939309 vs. ExPASy Swiss-Prot
Match: NAC61_ARATH (Putative NAC domain-containing protein 61 OS=Arabidopsis thaliana GN=NAC061 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.880e-18
Identity = 46/125 (36.80%), Postives = 72/125 (57.60%), Query Frame = 3
Query:   21 GFRFHPTDEELVRYYLK-RKDCHRPLRFNPICVTDIYKSEPWDLPDKSSLKTRD--KEWYFFSMLDKKYGNGSRTNRATEKGYWKTTGKDRPVHH-NTRTVGMKKTLVYHMGRAPHGERTNWVMH 383
            GFRF+PT+ EL+ YYL+ +         + I + D++  EP  LP+ +  + R   ++W FF    ++   G R +R T  GYWK TG   PV   + R +G+KKT+V++ G+AP G +T W M+
Sbjct:    8 GFRFYPTEVELLTYYLRIQLGGGNATIHSLIPILDVFSVEPTQLPNLAGERCRGDAEQWIFFVPRQEREARGGRPSRTTGSGYWKATGSPGPVFSPDNRVIGVKKTMVFYTGKAPTGRKTKWKMN 132          
BLAST of CK939309 vs. ExPASy Swiss-Prot
Match: NAC1_ARATH (NAC domain-containing protein 1 OS=Arabidopsis thaliana GN=NAC001 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.614e-15
Identity = 47/131 (35.88%), Postives = 67/131 (51.15%), Query Frame = 3
Query:   21 GFRFHPTDEELVRYYLKRKDCHRPLRFNPICVTD--IYKSEPWDLPDKSSLKTRDKEWYFFSMLDKKYGNGSRTNRATEKGYWKTTGKDRPVHHN--------TRTVGMKKTLVYHMGRAPHGERTNWVMH 383
            GF F P DEELV +YL+ K      R   + +++  I   +PW+L  +S  K+RD  WYFFS  +   GN  R +R T  G WK TG+   V              +G K+ LV+  GR P   +++WV+H
Sbjct:    6 GFGFRPNDEELVGHYLRNKIEGNTSRDVEVAISEVNICSYDPWNLRFQSKYKSRDAMWYFFSRRENNKGN--RQSRTTVSGKWKLTGESVEVKDQWGFCSEGFRGKIGHKRVLVFLDGRYPDKTKSDWVIH 134          
The following BLAST results are available for this feature:
BLAST of CK939309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
NAC90_ARATH1.981e-1937.40NAC domain-containing protein 90 OS=Arabidopsis th... [more]
NAC3_ARATH9.832e-1936.80NAC domain-containing protein 3 OS=Arabidopsis tha... [more]
NAC61_ARATH4.880e-1836.80Putative NAC domain-containing protein 61 OS=Arabi... [more]
NAC1_ARATH8.614e-1535.88NAC domain-containing protein 1 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_E02 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939309 ID=CK939309; Name=CK939309; organism=Citrus sinensis; type=EST; length=385bp
CATCGACGTCGTAAGCTCCGGGGTTCCGATTTCACCCCACCGATGAGGAA
CTCGTTCGGTATTATTTGAAACGGAAGGATTGCCATAGACCGCTCCGGTT
CAACCCAATCTGCGTCACCGATATTTACAAGTCCGAGCCTTGGGACCTAC
CCGATAAGTCGAGTTTGAAAACTAGGGACAAGGAGTGGTATTTTTTTAGT
ATGTTGGATAAGAAGTATGGCAATGGGTCGAGGACCAATAGGGCCACTGA
AAAAGGATACTGGAAGACCACTGGGAAGGATCGCCCTGTTCATCATAATA
CGCGGACTGTTGGGATGAAGAAGACCCTTGTCTATCACATGGGGAGGGCT
CCTCATGGTGAACGTACCAATTGGGTGATGCATGA
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