CK939299

Overview
NameCK939299
Unique NameCK939299
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length475
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK939299_ssr361 microsatellite CK939299_ssr361:361..375. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1871 contig Csv1_Contig1871:176..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939299 vs. ExPASy Swiss-Prot
Match: RL24_DICDI (60S ribosomal protein L24 OS=Dictyostelium discoideum GN=rpl24 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.765e-13
Identity = 38/82 (46.34%), Postives = 54/82 (65.85%), Query Frame = 2
Query:    2 KCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 247
            K +  F  ++ P  + W+ +YR+ +K      + KKK R TKK   R+IVGA+LEVIQ++R +KPEV+ AA E A REIKE+
Sbjct:   35 KVESLFFRKINPRDIRWSMVYRRIYKNTTTDVSAKKKARKTKK-VERNIVGASLEVIQQKRAQKPEVKQAAAEQAKREIKEK 115          
BLAST of CK939299 vs. ExPASy Swiss-Prot
Match: RL24_ASHGO (60S ribosomal protein L24 OS=Ashbya gossypii GN=RPL24 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.765e-13
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = 2
Query:    2 KCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 247
            K    FH R  P ++ WT +YR+ HKK I  E  KK+ R T K   R++VGA+LE+I++RR+ KPE+R A R+   +  KE+
Sbjct:   35 KSASLFHQRKNPRRIAWTVLYRRHHKKGITEEVAKKRSRKTVKA-QRAVVGASLELIKERRSLKPEIRKAKRDEKAKADKEK 115          
BLAST of CK939299 vs. ExPASy Swiss-Prot
Match: RL24_PLUXY (60S ribosomal protein L24 OS=Plutella xylostella GN=RpL24 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.144e-12
Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 2
Query:    2 KCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 247
            KC+     R  P K+TWT +YR++ KK    E  KK+ R T+K Y R+IVGA+L  I  +R  KPEVR A RE A+++ KE+
Sbjct:   35 KCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEQAKKRTRRTQK-YQRAIVGASLSDIMAKRNMKPEVRKAQREQAIKQAKEQ 115          
BLAST of CK939299 vs. ExPASy Swiss-Prot
Match: RL24_KLULA (60S ribosomal protein L24 OS=Kluyveromyces lactis GN=RPL24 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.144e-12
Identity = 35/82 (42.68%), Postives = 52/82 (63.41%), Query Frame = 2
Query:    2 KCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 247
            K    FH R  P ++ WT +YR+ HKK I  E  +K+ R + K   R++VGA+LE+I++RR+ KPEVR A R+   +  KE+
Sbjct:   35 KSASLFHQRKNPRRIAWTVLYRRHHKKGITEEVARKRTRKSVKA-QRAVVGASLELIKERRSLKPEVRKAQRDEKKKADKEK 115          
BLAST of CK939299 vs. ExPASy Swiss-Prot
Match: RL24_BRABE (60S ribosomal protein L24 OS=Branchiostoma belcheri GN=RPL24 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.494e-12
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = 2
Query:    2 KCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 247
            KC+  F  +  P ++TWT +YR++HKK    E  KK+ R T K + R+I GA+L  I  +R +KPEVR A RE A++  KE+
Sbjct:   35 KCEASFLMKRNPREITWTVLYRRKHKKGQQEEIQKKRSRRTAK-FQRAITGASLTEIMAKRNQKPEVRKAQREQAVKAAKEK 115          
BLAST of CK939299 vs. ExPASy Swiss-Prot
Match: RL24_CANGA (60S ribosomal protein L24 OS=Candida glabrata GN=RPL24 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.951e-12
Identity = 37/82 (45.12%), Postives = 51/82 (62.20%), Query Frame = 2
Query:    2 KCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 247
            K    F  R  P ++ WT +YR+ HKK I  E  KK+ R T K   R+IVGA+LE+I++RR+ KPEVR A R+   +  KE+
Sbjct:   35 KSASLFKQRKNPRRVAWTVLYRRHHKKGITEEVAKKRSRKTVKA-QRAIVGASLELIKERRSLKPEVRKAKRDDKAKADKEK 115          
BLAST of CK939299 vs. ExPASy Swiss-Prot
Match: RL24B_YEAST (60S ribosomal protein L24-B OS=Saccharomyces cerevisiae GN=RPL24B PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.548e-12
Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = 2
Query:    2 KCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 247
            K    F  R  P ++ WT ++RK HKK I  E  KK+ R T K   R I GA+L++I++RR+ KPEVR A RE  L+  KE+
Sbjct:   35 KSASLFKQRKNPRRIAWTVLFRKHHKKGITEEVAKKRSRKTVKA-QRPITGASLDLIKERRSLKPEVRKANREEKLKANKEK 115          
BLAST of CK939299 vs. ExPASy Swiss-Prot
Match: RL24A_YEAST (60S ribosomal protein L24-A OS=Saccharomyces cerevisiae GN=RPL24A PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.548e-12
Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = 2
Query:    2 KCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 247
            K    F  R  P ++ WT ++RK HKK I  E  KK+ R T K   R I GA+L++I++RR+ KPEVR A RE  L+  KE+
Sbjct:   35 KSASLFKQRKNPRRIAWTVLFRKHHKKGITEEVAKKRSRKTVKA-QRPITGASLDLIKERRSLKPEVRKANREEKLKANKEK 115          
BLAST of CK939299 vs. ExPASy Swiss-Prot
Match: RL24_PAGMA (60S ribosomal protein L24 OS=Pagrus major GN=rpl24 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.347e-12
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = 2
Query:    2 KCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKE 244
            KC+  F  +  P ++ WT +YR++HKK  + E  KK+ R   K + R+I GA+L  I  +R +KPEVR A RE A+R  KE
Sbjct:   35 KCESAFLAKRNPRQINWTVLYRRKHKKGQSEEVAKKRTRRAVK-FQRAITGASLAEIMAKRNQKPEVRKAQREQAIRAAKE 114          
BLAST of CK939299 vs. ExPASy Swiss-Prot
Match: RL24_ICTPU (60S ribosomal protein L24 OS=Ictalurus punctatus GN=rpl24 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.347e-12
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = 2
Query:    2 KCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKE 244
            KC+  F  +  P ++ WT +YR++HKK  + E  KK+ R   K + R+I GA+L  I  +R +KPEVR A RE A+R  KE
Sbjct:   35 KCESAFLTKRNPRQINWTVLYRRKHKKGQSEEVTKKRTRRAVK-FQRAITGASLAEILAKRNQKPEVRKAQREQAIRAAKE 114          
The following BLAST results are available for this feature:
BLAST of CK939299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RL24_DICDI1.765e-1346.3460S ribosomal protein L24 OS=Dictyostelium discoid... [more]
RL24_ASHGO1.765e-1343.9060S ribosomal protein L24 OS=Ashbya gossypii GN=RP... [more]
RL24_PLUXY1.144e-1246.3460S ribosomal protein L24 OS=Plutella xylostella G... [more]
RL24_KLULA1.144e-1242.6860S ribosomal protein L24 OS=Kluyveromyces lactis ... [more]
RL24_BRABE1.494e-1243.9060S ribosomal protein L24 OS=Branchiostoma belcher... [more]
RL24_CANGA1.951e-1245.1260S ribosomal protein L24 OS=Candida glabrata GN=R... [more]
RL24B_YEAST2.548e-1245.1260S ribosomal protein L24-B OS=Saccharomyces cerev... [more]
RL24A_YEAST2.548e-1245.1260S ribosomal protein L24-A OS=Saccharomyces cerev... [more]
RL24_PAGMA4.347e-1243.2160S ribosomal protein L24 OS=Pagrus major GN=rpl24... [more]
RL24_ICTPU4.347e-1243.2160S ribosomal protein L24 OS=Ictalurus punctatus G... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_F05 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_F05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939299 ID=CK939299; Name=CK939299; organism=Citrus sinensis; type=EST; length=475bp
AAAATGCAAGAGGTACTTCCACAACCGCTTGAAGCCATCAAAGCTTACAT
GGACTTCCATGTACAGGAAACAACACAAGAAGGATATTGCTGCTGAGGCT
GTAAAGAAGAAGCGCCGCTCCACAAAGAAGCCATATTCAAGGTCTATTGT
CGGTGCAACCTTGGAAGTCATACAGAAGAGGAGGACTGAAAAGCCTGAAG
TTCGAGATGCTGCTCGTGAGGCTGCACTTCGTGAAATTAAGGAGAGGATC
AAGAAGACCAAAGATGAAAAGAGGGCCAAGAAAGCTGAGGTGACATCCAA
GTCAAAGACTCAAAGCAAGGGTAGCATGCCCAAGGGTGCCGCTCCGAAGG
GCCCCAAGCTTGGTGGTGGTGGTGGAAAACGGTGAAGTGCTTCGTCTCTT
CATTTCTTCCTGACTACTATCTTAAACAATTAATATATTTATTCCATATT
TTNNGAATGGATTGGTCAATACTTG
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