CK939299

Overview
NameCK939299
Unique NameCK939299
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length475
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK939299_ssr361 microsatellite CK939299_ssr361:361..375. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1871 contig Csv1_Contig1871:176..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939299 vs. ExPASy Swiss-Prot
Match: RL24_GILMI (60S ribosomal protein L24 OS=Gillichthys mirabilis GN=rpl24 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 4.347e-12
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = 2
Query:    2 KCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKE 244
            KC+  F  +  P ++ WT +YR++HKK  + E  KK+ R   K + R+I GA+L  I  +R +KPEVR A RE A+R  KE
Sbjct:   35 KCESAFLAKRNPRQINWTVLYRRKHKKGQSEEVTKKRTRRAVK-FQRAITGASLAEIMAKRNQKPEVRKAQREQAIRAAKE 114          
BLAST of CK939299 vs. ExPASy Swiss-Prot
Match: RL24_SPOFR (60S ribosomal protein L24 OS=Spodoptera frugiperda GN=RpL24 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.677e-12
Identity = 37/82 (45.12%), Postives = 51/82 (62.20%), Query Frame = 2
Query:    2 KCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 247
            KC+     R  P K+TWT +YR++ KK    E  KK+ R T+K Y R+IVGA+L  I  +R  KPEVR A R+ A++  KE+
Sbjct:   35 KCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEQTKKRTRRTQK-YQRAIVGASLSDIMAKRNMKPEVRKAQRDQAIKAAKEQ 115          
BLAST of CK939299 vs. ExPASy Swiss-Prot
Match: RL24_RAT (60S ribosomal protein L24 OS=Rattus norvegicus GN=Rpl24 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.677e-12
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 2
Query:    2 KCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKE 244
            KC+  F ++  P ++ WT +YR++HKK  + E  KK+ R   K + R+I GA+L  I  +R +KPEVR A RE A+R  KE
Sbjct:   35 KCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK-FQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKE 114          
BLAST of CK939299 vs. ExPASy Swiss-Prot
Match: RL24_MOUSE (60S ribosomal protein L24 OS=Mus musculus GN=Rpl24 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 5.677e-12
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 2
Query:    2 KCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKE 244
            KC+  F ++  P ++ WT +YR++HKK  + E  KK+ R   K + R+I GA+L  I  +R +KPEVR A RE A+R  KE
Sbjct:   35 KCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK-FQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKE 114          
BLAST of CK939299 vs. ExPASy Swiss-Prot
Match: RL24_MACFA (60S ribosomal protein L24 OS=Macaca fascicularis GN=RPL24 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.677e-12
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 2
Query:    2 KCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKE 244
            KC+  F ++  P ++ WT +YR++HKK  + E  KK+ R   K + R+I GA+L  I  +R +KPEVR A RE A+R  KE
Sbjct:   35 KCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK-FQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKE 114          
BLAST of CK939299 vs. ExPASy Swiss-Prot
Match: RL24_HUMAN (60S ribosomal protein L24 OS=Homo sapiens GN=RPL24 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.677e-12
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 2
Query:    2 KCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKE 244
            KC+  F ++  P ++ WT +YR++HKK  + E  KK+ R   K + R+I GA+L  I  +R +KPEVR A RE A+R  KE
Sbjct:   35 KCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK-FQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKE 114          
BLAST of CK939299 vs. ExPASy Swiss-Prot
Match: RL24_FELCA (60S ribosomal protein L24 OS=Felis catus GN=RPL24 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.677e-12
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 2
Query:    2 KCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKE 244
            KC+  F ++  P ++ WT +YR++HKK  + E  KK+ R   K + R+I GA+L  I  +R +KPEVR A RE A+R  KE
Sbjct:   35 KCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK-FQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKE 114          
BLAST of CK939299 vs. ExPASy Swiss-Prot
Match: RL24_DANRE (60S ribosomal protein L24 OS=Danio rerio GN=rpl24 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.677e-12
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 2
Query:    2 KCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKE 244
            KC+  F ++  P ++ WT +YR++HKK  + E  KK+ R   K + R+I GA+L  I  +R +KPEVR A RE A+R  KE
Sbjct:   35 KCESAFLSKRNPRQINWTVLYRRKHKKGQSEEVSKKRTRRAVK-FQRAITGASLAEILAKRNQKPEVRKAQREQAIRAAKE 114          
BLAST of CK939299 vs. ExPASy Swiss-Prot
Match: RL24_BOVIN (60S ribosomal protein L24 OS=Bos taurus GN=RPL24 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 5.677e-12
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 2
Query:    2 KCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKE 244
            KC+  F ++  P ++ WT +YR++HKK  + E  KK+ R   K + R+I GA+L  I  +R +KPEVR A RE A+R  KE
Sbjct:   35 KCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK-FQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKE 114          
BLAST of CK939299 vs. ExPASy Swiss-Prot
Match: RL24_YARLI (60S ribosomal protein L24 OS=Yarrowia lipolytica GN=RPL24 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.806e-11
Identity = 34/82 (41.46%), Postives = 48/82 (58.54%), Query Frame = 2
Query:    2 KCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 247
            K    F  R  P ++ WT +YR++HKK I  E  KK+ R + K   R IVGA+L+VI+++R  +PE R+A R       KER
Sbjct:   35 KTASLFKQRKNPRRIAWTVLYRRKHKKGITEEVSKKRSRKSVKAV-RGIVGASLDVIKEKRNARPETRNATRAKHAEAAKER 115          
The following BLAST results are available for this feature:
BLAST of CK939299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RL24_GILMI4.347e-1243.2160S ribosomal protein L24 OS=Gillichthys mirabilis... [more]
RL24_SPOFR5.677e-1245.1260S ribosomal protein L24 OS=Spodoptera frugiperda... [more]
RL24_RAT5.677e-1243.2160S ribosomal protein L24 OS=Rattus norvegicus GN=... [more]
RL24_MOUSE5.677e-1243.2160S ribosomal protein L24 OS=Mus musculus GN=Rpl24... [more]
RL24_MACFA5.677e-1243.2160S ribosomal protein L24 OS=Macaca fascicularis G... [more]
RL24_HUMAN5.677e-1243.2160S ribosomal protein L24 OS=Homo sapiens GN=RPL24... [more]
RL24_FELCA5.677e-1243.2160S ribosomal protein L24 OS=Felis catus GN=RPL24 ... [more]
RL24_DANRE5.677e-1243.2160S ribosomal protein L24 OS=Danio rerio GN=rpl24 ... [more]
RL24_BOVIN5.677e-1243.2160S ribosomal protein L24 OS=Bos taurus GN=RPL24 P... [more]
RL24_YARLI4.806e-1141.4660S ribosomal protein L24 OS=Yarrowia lipolytica G... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_F05 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_F05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939299 ID=CK939299; Name=CK939299; organism=Citrus sinensis; type=EST; length=475bp
AAAATGCAAGAGGTACTTCCACAACCGCTTGAAGCCATCAAAGCTTACAT
GGACTTCCATGTACAGGAAACAACACAAGAAGGATATTGCTGCTGAGGCT
GTAAAGAAGAAGCGCCGCTCCACAAAGAAGCCATATTCAAGGTCTATTGT
CGGTGCAACCTTGGAAGTCATACAGAAGAGGAGGACTGAAAAGCCTGAAG
TTCGAGATGCTGCTCGTGAGGCTGCACTTCGTGAAATTAAGGAGAGGATC
AAGAAGACCAAAGATGAAAAGAGGGCCAAGAAAGCTGAGGTGACATCCAA
GTCAAAGACTCAAAGCAAGGGTAGCATGCCCAAGGGTGCCGCTCCGAAGG
GCCCCAAGCTTGGTGGTGGTGGTGGAAAACGGTGAAGTGCTTCGTCTCTT
CATTTCTTCCTGACTACTATCTTAAACAATTAATATATTTATTCCATATT
TTNNGAATGGATTGGTCAATACTTG
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