CK939288

Overview
NameCK939288
Unique NameCK939288
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_YERP3 (Fatty acid oxidation complex subunit alpha OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=fadJ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.444e-11
Identity = 43/125 (34.40%), Postives = 63/125 (50.40%), Query Frame = 2
Query:  197 VMIRSSVPKVFSAGADLKERRQMSPS-EIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICG--EAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            ++I S  P  F AGAD+        + +        +S  + + A  +P +A I              C  RIC   +  +LGLPE  L ++PG+GGTQRLPRLVG S A D+I TG+++  + A
Sbjct:   62 LVIVSGKPDSFIAGADITMIAACRTAHDARVLAQKGQSILAQIAAFPVPVVAAIHGACLGGGLELALACHSRICSLDDKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSKALDMILTGKQIRPRQA 186          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_SHEHH (Fatty acid oxidation complex subunit alpha OS=Shewanella halifaxensis (strain HAW-EB4) GN=fadJ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.444e-11
Identity = 45/137 (32.85%), Postives = 67/137 (48.91%), Query Frame = 2
Query:  170 ISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPSEIHFYVNTLRS----TFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICG--EAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            I  D+S   +++ S     F AGAD+     +   E       L       F+ LE+L IP +A I+             C  R+C      ++G+PE  L ++PG GGTQRLPRLVG + A D++ TG+++  K A
Sbjct:   46 IKADTSIKGLVLVSGKKDSFVAGADIS---MLDACETATDAKQLSQQGHVVFNELESLPIPVVAAINGACLGGGLELALACHKRVCSLNPKTMMGVPEVQLGLLPGGGGTQRLPRLVGVTTALDMMLTGKQLRPKQA 179          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_SHEPW (Fatty acid oxidation complex subunit alpha OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=fadB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.444e-11
Identity = 48/144 (33.33%), Postives = 71/144 (49.31%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPSEIHFYVNTLRST---FSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGR 541
            N    + +  L  A ++I +++S   +M+ S+ P  F  GAD+ E   +   E    ++ L      F+ LE L  PTI+ I+              D R+    A +GLPET L IIPG GGT RLPR+VG   A + I +G+
Sbjct:   29 NKFDRETIDSLNAALDSIKQNNSIKGLMLTSAKP-AFIVGADITEFLGLFAEEDAVLLSWLEEANVVFNKLEDLPFPTISAINGFALGAGCETILATDFRVADTTARIGLPETKLGIIPGFGGTVRLPRVVGTDNALEWITSGK 171          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_SALTY (Fatty acid oxidation complex subunit alpha OS=Salmonella typhimurium GN=fadB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.444e-11
Identity = 45/151 (29.80%), Postives = 73/151 (48.34%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            N L T  +  L  A E + +      +++RS+    F  GAD+ E   +      ++  +++   S F+ LE L +PT+A ++              D R+      +GLPET L I+PG GG+ RLPR++G   A +II  G+ V  + A
Sbjct:   29 NKLDTATVASLGQALEVLEKQHDLKGLLLRSN-KAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTLAAVNGYALGGGCECVLATDYRLATPDLRIGLPETKLGIMPGFGGSVRLPRMLGADSALEIIAAGKDVGAEHA 178          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_SALTI (Fatty acid oxidation complex subunit alpha OS=Salmonella typhi GN=fadB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.444e-11
Identity = 45/151 (29.80%), Postives = 73/151 (48.34%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            N L T  +  L  A E + +      +++RS+    F  GAD+ E   +      ++  +++   S F+ LE L +PT+A ++              D R+      +GLPET L I+PG GG+ RLPR++G   A +II  G+ V  + A
Sbjct:   29 NKLDTATVASLGQALEVLEKQHDLKGLLLRSN-KAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTLAAVNGYALGGGCECVLATDYRLATPDLRIGLPETKLGIMPGFGGSVRLPRMLGADSALEIIAAGKDVGAEHA 178          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_SALPK (Fatty acid oxidation complex subunit alpha OS=Salmonella paratyphi A (strain AKU_12601) GN=fadB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.444e-11
Identity = 45/151 (29.80%), Postives = 73/151 (48.34%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            N L T  +  L  A E + +      +++RS+    F  GAD+ E   +      ++  +++   S F+ LE L +PT+A ++              D R+      +GLPET L I+PG GG+ RLPR++G   A +II  G+ V  + A
Sbjct:   29 NKLDTATVASLGQALEVLEKQHDLKGLLLRSN-KAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTLAAVNGYALGGGCECVLATDYRLATPDLRIGLPETKLGIMPGFGGSVRLPRMLGADSALEIIAAGKDVGAEHA 178          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_SALPB (Fatty acid oxidation complex subunit alpha OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=fadB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.444e-11
Identity = 45/151 (29.80%), Postives = 73/151 (48.34%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            N L T  +  L  A E + +      +++RS+    F  GAD+ E   +      ++  +++   S F+ LE L +PT+A ++              D R+      +GLPET L I+PG GG+ RLPR++G   A +II  G+ V  + A
Sbjct:   29 NKLDTATVASLGQALEVLEKQHDLKGLLLRSN-KAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTLAAVNGYALGGGCECVLATDYRLATPDLRIGLPETKLGIMPGFGGSVRLPRMLGADSALEIIAAGKDVGAEHA 178          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_SALPA (Fatty acid oxidation complex subunit alpha OS=Salmonella paratyphi A GN=fadB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.444e-11
Identity = 45/151 (29.80%), Postives = 73/151 (48.34%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            N L T  +  L  A E + +      +++RS+    F  GAD+ E   +      ++  +++   S F+ LE L +PT+A ++              D R+      +GLPET L I+PG GG+ RLPR++G   A +II  G+ V  + A
Sbjct:   29 NKLDTATVASLGQALEVLEKQHDLKGLLLRSN-KAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTLAAVNGYALGGGCECVLATDYRLATPDLRIGLPETKLGIMPGFGGSVRLPRMLGADSALEIIAAGKDVGAEHA 178          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_SALNS (Fatty acid oxidation complex subunit alpha OS=Salmonella newport (strain SL254) GN=fadB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.444e-11
Identity = 45/151 (29.80%), Postives = 73/151 (48.34%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            N L T  +  L  A E + +      +++RS+    F  GAD+ E   +      ++  +++   S F+ LE L +PT+A ++              D R+      +GLPET L I+PG GG+ RLPR++G   A +II  G+ V  + A
Sbjct:   29 NKLDTATVASLGQALEVLEKQHDLKGLLLRSN-KAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTLAAVNGYALGGGCECVLATDYRLATPDLRIGLPETKLGIMPGFGGSVRLPRMLGADSALEIIAAGKDVGAEHA 178          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_SALG2 (Fatty acid oxidation complex subunit alpha OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=fadB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.444e-11
Identity = 45/151 (29.80%), Postives = 73/151 (48.34%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            N L T  +  L  A E + +      +++RS+    F  GAD+ E   +      ++  +++   S F+ LE L +PT+A ++              D R+      +GLPET L I+PG GG+ RLPR++G   A +II  G+ V  + A
Sbjct:   29 NKLDTATVASLGQALEVLEKQHDLKGLLLRSN-KAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTLAAVNGYALGGGCECVLATDYRLATPDLRIGLPETKLGIMPGFGGSVRLPRMLGADSALEIIAAGKDVGAEHA 178          
The following BLAST results are available for this feature:
BLAST of CK939288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
FADJ_YERP31.444e-1134.40Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADJ_SHEHH1.444e-1132.85Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_SHEPW1.444e-1133.33Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_SALTY1.444e-1129.80Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADB_SALTI1.444e-1129.80Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADB_SALPK1.444e-1129.80Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADB_SALPB1.444e-1129.80Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADB_SALPA1.444e-1129.80Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADB_SALNS1.444e-1129.80Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADB_SALG21.444e-1129.80Fatty acid oxidation complex subunit alpha OS=Salm... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_F11 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939288 ID=CK939288; Name=CK939288; organism=Citrus sinensis; type=EST; length=563bp
TGCCCTCCCAAATAACGAAAAAACCCATTGGGGCAAACCTTCCCAGCCAC
TTTTAAATTTATTAATCTCTGAAAATATTGTNNNNATCAACACTTCTCAG
TTTCATGAGTACCAAAAAAATGCGCTTGGAACGGATATGTTGAGAGGCTT
ATAGCATGCATTTGAAACTATCAGTGAGGATTCCTCTGCTAATGTTGTCA
TGATACGTAGCTCGGTTCCTAAAGTGTTCAGTGCTGGAGCTGATTTGAAG
GAACGCAGGCAAATGAGTCCATCTGAGATTCATTTTTATGTCAACACATT
GCGATCTACATTCTCCTTCTTAGAGGCACTTCGTATTCCAACCATTGCTG
TTATTGATGGAGCAGCATTGGGTGGTGGACTTGAAATGGCACTAGCATGT
GATCTTCGCATCTGTGGAGAAGCAGCACTATTGGGCTTGCCTGAAACAGG
ACTTGCTATAATTCCTGGGGCGGGTGGGACACAGCGGCTTCCAAGATTAG
TTGGAAAATCAGTAGCAAAAGATATTATATTTACTGGCCGCAAAGTTAGT
GGCAAAGATGCAA
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