CK939288
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_SHEWM (Fatty acid oxidation complex subunit alpha OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=fadB PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 7.167e-11 Identity = 47/144 (32.64%), Postives = 68/144 (47.22%), Query Frame = 2 Query: 119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPSEIHF---YVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGR 541 N L + + L A + I +D++ +++ S F GAD+ E + E ++ F+ +E L PTI+ I+ D RI A LGLPET L +IPG GGT RLPRL+G A + I TG+ Sbjct: 29 NKLDRETIDSLNAALDAIKQDTNIQGLVLTSG-KGAFIVGADITEFLGLFAQEESVLLPWIAEANVVFNKIEDLPFPTISAINGFALGGGFETVLATDFRIADTTAKLGLPETKLGLIPGFGGTVRLPRLIGADNALEWITTGK 171
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_PSEA7 (Fatty acid oxidation complex subunit alpha OS=Pseudomonas aeruginosa (strain PA7) GN=fadB PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 7.167e-11 Identity = 46/138 (33.33%), Postives = 65/138 (47.10%), Query Frame = 2 Query: 158 AFETISEDSSANVVMIRSSVPKVFSAGADLKE---RRQMSPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562 A + I D++ V++ S VF GAD+ E Q+ E+ FS E L +PT+A I+ D R+ A +GLPE L I PG GGT RLPRL+G A + I +G++ +DA Sbjct: 43 AVDAIKADAAVKGVIVTSG-KDVFIVGADITEFVDNFQLPDEELMAGNLEANKIFSDFEDLDVPTVAAINGIALGGGLEMCLAADFRVMSATAKVGLPEVKLGIYPGFGGTVRLPRLIGCDNAVEWIASGKENKAEDA 179
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_ECOSE (Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain SE11) GN=fadB PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 7.167e-11 Identity = 45/151 (29.80%), Postives = 71/151 (47.02%), Query Frame = 2 Query: 119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562 N L T + L A + + S +++RS+ F GAD+ E + ++ +++ S F+ LE L +PTIA + D R+ +GLPET L I+PG GG+ R+PR++G A +II G+ V A Sbjct: 29 NKLDTATVASLGEAIGVLEQQSDLKGLLLRSN-KAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTIAAANGYALGGGCECVLATDYRLATPDLRIGLPETKLGIMPGFGGSVRMPRMLGADSALEIIAAGKDVGADQA 178
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_CITK8 (Fatty acid oxidation complex subunit alpha OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=fadB PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 7.167e-11 Identity = 42/151 (27.81%), Postives = 74/151 (49.01%), Query Frame = 2 Query: 119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562 N L T + L A + + + + +++RS+ F GAD+ E + ++ +++ S F+ LE L +PT++ I+ D R+ +GLPET L I+PG GG+ R+PR++G A +II G+ + + A Sbjct: 29 NKLDTATVASLGQALDVLEKQTDLKGLLLRSN-KAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTLSAINGYALGGGCECVLATDYRLVTPDLRIGLPETKLGIMPGFGGSVRMPRMLGADSALEIIAAGKDIGAEQA 178
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_SHEAM (Fatty acid oxidation complex subunit alpha OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=fadB PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 9.361e-11 Identity = 44/134 (32.84%), Postives = 64/134 (47.76%), Query Frame = 2 Query: 170 ISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPSE---IHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562 + +DS A ++ S F GAD+ E + E + ++ F+ LE L PT++ I D R+ +A +GLPET L +IPG GGT RLPRL+G A + I TG+ +DA Sbjct: 45 VLKDSDAKAAVLTSG-KDTFIVGADITEFLALFAEEDAKLMEWIAQANVVFNKLEDLPFPTVSAIKGFALGGGCEAILATDFRVADTSAKIGLPETKLGLIPGFGGTVRLPRLIGADNALEWITTGKDQRPEDA 177 The following BLAST results are available for this feature:
BLAST of CK939288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 205
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK939288 ID=CK939288; Name=CK939288; organism=Citrus sinensis; type=EST; length=563bpback to top |