CK939288

Overview
NameCK939288
Unique NameCK939288
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_SHEWM (Fatty acid oxidation complex subunit alpha OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=fadB PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.167e-11
Identity = 47/144 (32.64%), Postives = 68/144 (47.22%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPSEIHF---YVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGR 541
            N L  + +  L  A + I +D++   +++ S     F  GAD+ E   +   E      ++      F+ +E L  PTI+ I+              D RI    A LGLPET L +IPG GGT RLPRL+G   A + I TG+
Sbjct:   29 NKLDRETIDSLNAALDAIKQDTNIQGLVLTSG-KGAFIVGADITEFLGLFAQEESVLLPWIAEANVVFNKIEDLPFPTISAINGFALGGGFETVLATDFRIADTTAKLGLPETKLGLIPGFGGTVRLPRLIGADNALEWITTGK 171          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_PSEA7 (Fatty acid oxidation complex subunit alpha OS=Pseudomonas aeruginosa (strain PA7) GN=fadB PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.167e-11
Identity = 46/138 (33.33%), Postives = 65/138 (47.10%), Query Frame = 2
Query:  158 AFETISEDSSANVVMIRSSVPKVFSAGADLKE---RRQMSPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            A + I  D++   V++ S    VF  GAD+ E     Q+   E+          FS  E L +PT+A I+              D R+    A +GLPE  L I PG GGT RLPRL+G   A + I +G++   +DA
Sbjct:   43 AVDAIKADAAVKGVIVTSG-KDVFIVGADITEFVDNFQLPDEELMAGNLEANKIFSDFEDLDVPTVAAINGIALGGGLEMCLAADFRVMSATAKVGLPEVKLGIYPGFGGTVRLPRLIGCDNAVEWIASGKENKAEDA 179          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_ECOSE (Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain SE11) GN=fadB PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.167e-11
Identity = 45/151 (29.80%), Postives = 71/151 (47.02%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            N L T  +  L  A   + + S    +++RS+    F  GAD+ E   +      ++  +++   S F+ LE L +PTIA  +              D R+      +GLPET L I+PG GG+ R+PR++G   A +II  G+ V    A
Sbjct:   29 NKLDTATVASLGEAIGVLEQQSDLKGLLLRSN-KAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTIAAANGYALGGGCECVLATDYRLATPDLRIGLPETKLGIMPGFGGSVRMPRMLGADSALEIIAAGKDVGADQA 178          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_CITK8 (Fatty acid oxidation complex subunit alpha OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=fadB PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.167e-11
Identity = 42/151 (27.81%), Postives = 74/151 (49.01%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            N L T  +  L  A + + + +    +++RS+    F  GAD+ E   +      ++  +++   S F+ LE L +PT++ I+              D R+      +GLPET L I+PG GG+ R+PR++G   A +II  G+ +  + A
Sbjct:   29 NKLDTATVASLGQALDVLEKQTDLKGLLLRSN-KAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTLSAINGYALGGGCECVLATDYRLVTPDLRIGLPETKLGIMPGFGGSVRMPRMLGADSALEIIAAGKDIGAEQA 178          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_SHEAM (Fatty acid oxidation complex subunit alpha OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=fadB PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.361e-11
Identity = 44/134 (32.84%), Postives = 64/134 (47.76%), Query Frame = 2
Query:  170 ISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPSE---IHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            + +DS A   ++ S     F  GAD+ E   +   E   +  ++      F+ LE L  PT++ I               D R+   +A +GLPET L +IPG GGT RLPRL+G   A + I TG+    +DA
Sbjct:   45 VLKDSDAKAAVLTSG-KDTFIVGADITEFLALFAEEDAKLMEWIAQANVVFNKLEDLPFPTVSAIKGFALGGGCEAILATDFRVADTSAKIGLPETKLGLIPGFGGTVRLPRLIGADNALEWITTGKDQRPEDA 177          
The following BLAST results are available for this feature:
BLAST of CK939288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
FADB_SHEWM7.167e-1132.64Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_PSEA77.167e-1133.33Fatty acid oxidation complex subunit alpha OS=Pseu... [more]
FADB_ECOSE7.167e-1129.80Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADB_CITK87.167e-1127.81Fatty acid oxidation complex subunit alpha OS=Citr... [more]
FADB_SHEAM9.361e-1132.84Fatty acid oxidation complex subunit alpha OS=Shew... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_F11 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939288 ID=CK939288; Name=CK939288; organism=Citrus sinensis; type=EST; length=563bp
TGCCCTCCCAAATAACGAAAAAACCCATTGGGGCAAACCTTCCCAGCCAC
TTTTAAATTTATTAATCTCTGAAAATATTGTNNNNATCAACACTTCTCAG
TTTCATGAGTACCAAAAAAATGCGCTTGGAACGGATATGTTGAGAGGCTT
ATAGCATGCATTTGAAACTATCAGTGAGGATTCCTCTGCTAATGTTGTCA
TGATACGTAGCTCGGTTCCTAAAGTGTTCAGTGCTGGAGCTGATTTGAAG
GAACGCAGGCAAATGAGTCCATCTGAGATTCATTTTTATGTCAACACATT
GCGATCTACATTCTCCTTCTTAGAGGCACTTCGTATTCCAACCATTGCTG
TTATTGATGGAGCAGCATTGGGTGGTGGACTTGAAATGGCACTAGCATGT
GATCTTCGCATCTGTGGAGAAGCAGCACTATTGGGCTTGCCTGAAACAGG
ACTTGCTATAATTCCTGGGGCGGGTGGGACACAGCGGCTTCCAAGATTAG
TTGGAAAATCAGTAGCAAAAGATATTATATTTACTGGCCGCAAAGTTAGT
GGCAAAGATGCAA
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