CK939288

Overview
NameCK939288
Unique NameCK939288
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_YERPA (Fatty acid oxidation complex subunit alpha OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=fadB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.264e-15
Identity = 51/151 (33.77%), Postives = 77/151 (50.99%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            N L T  +  L  A   + + S    +++RS+   +   GAD+ E   +    P ++H ++    + F+ LE L +PTI+ I+              D RI    A +GLPET L I+PG GG+ RLPRL+G   A +II TG+ V+  DA
Sbjct:   29 NKLDTKTVANLGEALNVLEKQSELKGLLLRSAKTALI-VGADITEFLSLFNAPPEKLHQWLVFANTIFNRLEDLPVPTISAINGYALGGGCECILATDFRIASPEARIGLPETKLGIMPGFGGSVRLPRLLGADSALEIIATGKDVTANDA 178          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_YERP3 (Fatty acid oxidation complex subunit alpha OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=fadB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.264e-15
Identity = 51/151 (33.77%), Postives = 77/151 (50.99%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            N L T  +  L  A   + + S    +++RS+   +   GAD+ E   +    P ++H ++    + F+ LE L +PTI+ I+              D RI    A +GLPET L I+PG GG+ RLPRL+G   A +II TG+ V+  DA
Sbjct:   29 NKLDTKTVANLGEALNVLEKQSELKGLLLRSAKTALI-VGADITEFLSLFNAPPEKLHQWLVFANTIFNRLEDLPVPTISAINGYALGGGCECILATDFRIASPEARIGLPETKLGIMPGFGGSVRLPRLLGADSALEIIATGKDVTANDA 178          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_SERP5 (Fatty acid oxidation complex subunit alpha OS=Serratia proteamaculans (strain 568) GN=fadB PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.181e-15
Identity = 52/151 (34.44%), Postives = 79/151 (52.32%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQM--SPSE-IHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            N L T  +  L  A   + + +    +++RS+    F  GAD+ E   +  +P+E +  ++N   + F+ LE L +PTI+ I+              D R+    A +GLPET L I+PG GG+ RLPRL+G   A +II  G+ VS KDA
Sbjct:   29 NKLDTRTVASLGEALAVLEKQTELKGLLLRST-KAAFIVGADITEFLSLFAAPAEKLQEWLNFANAIFNRLEDLPVPTISAINGYALGGGCECILATDFRVASPDARIGLPETKLGIMPGFGGSVRLPRLLGNDSALEIIAAGKDVSAKDA 178          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: ECHM_CAEEL (Probable enoyl-CoA hydratase, mitochondrial OS=Caenorhabditis elegans GN=ech-6 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.380e-14
Identity = 49/149 (32.89%), Postives = 75/149 (50.34%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPSEIHF-YVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            NAL   ++  L  A E +  D S   ++I  S  + F+AGAD+KE   M+ +E    +  +  S ++ +  ++ P IA ++             CD+   GE A  G PE  +  IPGAGGTQR  R  GKS A ++  TG  V+ ++A
Sbjct:   57 NALCAQLMTELADALEVLDTDKSVGAIVITGS-ERAFAAGADIKE---MTNNEFATTFSGSFLSNWTAVSDVKKPVIAAVNGFALGGGNELAMMCDIIYAGEKARFGQPEINIGTIPGAGGTQRWARAAGKSFAMEVCLTGNHVTAQEA 201          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: ECHH_RHIME (Probable enoyl-CoA hydratase OS=Rhizobium meliloti GN=fadB1 PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.380e-14
Identity = 49/148 (33.11%), Postives = 71/148 (47.97%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            NAL   ++R L  A +    D +   +++  S  K F+AGAD+KE + +    +  Y+      +  +   R P IA +              CD  I  E A  G PE  L +IPG GG+QRL R VGK+ A D+I TGR +   +A
Sbjct:   26 NALNAVLMRELDAALKAFDADRAVGAIVLAGS-EKAFAAGADIKEMQGLD--FVDGYLADFLGGWEHVANARKPMIAAVSGFALGGGCELAMMCDFIIASETAKFGQPEITLGVIPGMGGSQRLTRAVGKAKAMDLILTGRMMDAAEA 170          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_CITK8 (Fatty acid oxidation complex subunit alpha OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=fadJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.926e-14
Identity = 49/134 (36.57%), Postives = 69/134 (51.49%), Query Frame = 2
Query:  170 ISEDSSANVVMIRSSVPKVFSAGADLKERRQM-SPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAA--LLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            I E+ +   V+  S+ P  F AGAD+       S  E        +   + ++AL +P +A I              C  RIC + A  +LGLPE  L ++PG+GGTQRLPRLVG S A D+I TG+++  K A
Sbjct:   46 IRENKALRGVVFISAKPDNFIAGADINMIGNCKSAQEAETLARQGQQIMAEIQALSVPVVAAIHGACLGGGLEMALACHRRICTDDAKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRPKQA 179          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_VIBVY (Fatty acid oxidation complex subunit alpha OS=Vibrio vulnificus (strain YJ016) GN=fadJ PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.046e-14
Identity = 57/178 (32.02%), Postives = 83/178 (46.63%), Query Frame = 2
Query:   44 QPLLNLLISE-NIVXINTSQFHEYQKNALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLK--ERRQMSPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            Q   NL I E NI  +     +E + N L       +   F  + + S    +++ S  P  F AGAD++  E  + +P E        +  F  L  L  P +A I              CD R+C +  A  LGLPE  L ++PG+GGTQRLPRL+G   + D+I TG+++  K A
Sbjct:    4 QKAFNLKIDEQNIAWLGIDVPNE-KMNTLQAAFADEMKAIFAQLKDSSGLKGLIVHSLKPDNFVAGADVRMLEACKTAP-EAEALARQGQELFQQLSDLPYPVVAAIHGPCLGGGLELALACDFRVCSDDDATRLGLPEVQLGLLPGSGGTQRLPRLIGLLPSLDLILTGKQLRAKKA 179          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_SHEFN (Fatty acid oxidation complex subunit alpha OS=Shewanella frigidimarina (strain NCIMB 400) GN=fadJ PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.046e-14
Identity = 49/137 (35.77%), Postives = 68/137 (49.64%), Query Frame = 2
Query:  170 ISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPSEIHFYVNTLRS----TFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            I  DSS   +++ S     F AGAD+         E      TL       F+ LE L IP +A I+             C LR+C +    +LG+PE  L ++PG GGTQRLPRLVG + A D++ TG+++  K A
Sbjct:   46 IKADSSIKGLVVISGKADSFVAGADITMLAACKNEE---QAKTLSQQGHVVFAELEGLSIPVVAAINGACLGGGLELALACHLRVCSDDKKTMLGVPEVQLGLLPGGGGTQRLPRLVGITTALDMMLTGKQIRPKQA 179          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_PHOLL (Fatty acid oxidation complex subunit alpha OS=Photorhabdus luminescens subsp. laumondii GN=fadB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.181e-13
Identity = 50/151 (33.11%), Postives = 76/151 (50.33%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQM--SPSE-IHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            N L T  +  L  A  ++ + +    V++RS     F  GAD+ E   +  SP E +  ++N   S F+ +E L +PTI+ I+              D R+      +GLPET L I+PG GG+ RLPRL+G   A DII  G+ +  ++A
Sbjct:   29 NKLDTKTVASLDKAIASLEQQTGLKGVLLRSE-KTAFIVGADITEFLSLFDSPVEKLQEWLNFSNSIFNRIEDLPVPTISAINGYALGGGCECVLSTDFRVASPDIRIGLPETKLGIMPGFGGSVRLPRLIGTDNALDIIAAGKDIGAEEA 178          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_ALISL (Fatty acid oxidation complex subunit alpha OS=Aliivibrio salmonicida (strain LFI1238) GN=fadB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.543e-13
Identity = 49/151 (32.45%), Postives = 74/151 (49.01%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPS---EIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            N L    LR L  A + + +      +++ SS    F  GAD+ E   +  +   E+  +++     FS LE L +PT++ I               D R+  + A +GLPET L I+PG GG+ RLPRL+G   A ++I TG+    KDA
Sbjct:   29 NKLNIATLRSLGEAIDVLYKQKDLQALLL-SSGKSAFIVGADITEFLGLFDTPEEELSDWLHQANVIFSRLEDLPVPTLSAITGFALGGGCECVLATDFRLADDTASIGLPETQLGIMPGWGGSVRLPRLIGADPAMEVITTGKPKRAKDA 178          
The following BLAST results are available for this feature:
BLAST of CK939288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
FADB_YERPA6.264e-1533.77Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADB_YERP36.264e-1533.77Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADB_SERP58.181e-1534.44Fatty acid oxidation complex subunit alpha OS=Serr... [more]
ECHM_CAEEL2.380e-1432.89Probable enoyl-CoA hydratase, mitochondrial OS=Cae... [more]
ECHH_RHIME2.380e-1433.11Probable enoyl-CoA hydratase OS=Rhizobium meliloti... [more]
FADJ_CITK86.926e-1436.57Fatty acid oxidation complex subunit alpha OS=Citr... [more]
FADJ_VIBVY9.046e-1432.02Fatty acid oxidation complex subunit alpha OS=Vibr... [more]
FADJ_SHEFN9.046e-1435.77Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_PHOLL1.181e-1333.11Fatty acid oxidation complex subunit alpha OS=Phot... [more]
FADB_ALISL1.543e-1332.45Fatty acid oxidation complex subunit alpha OS=Alii... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_F11 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939288 ID=CK939288; Name=CK939288; organism=Citrus sinensis; type=EST; length=563bp
TGCCCTCCCAAATAACGAAAAAACCCATTGGGGCAAACCTTCCCAGCCAC
TTTTAAATTTATTAATCTCTGAAAATATTGTNNNNATCAACACTTCTCAG
TTTCATGAGTACCAAAAAAATGCGCTTGGAACGGATATGTTGAGAGGCTT
ATAGCATGCATTTGAAACTATCAGTGAGGATTCCTCTGCTAATGTTGTCA
TGATACGTAGCTCGGTTCCTAAAGTGTTCAGTGCTGGAGCTGATTTGAAG
GAACGCAGGCAAATGAGTCCATCTGAGATTCATTTTTATGTCAACACATT
GCGATCTACATTCTCCTTCTTAGAGGCACTTCGTATTCCAACCATTGCTG
TTATTGATGGAGCAGCATTGGGTGGTGGACTTGAAATGGCACTAGCATGT
GATCTTCGCATCTGTGGAGAAGCAGCACTATTGGGCTTGCCTGAAACAGG
ACTTGCTATAATTCCTGGGGCGGGTGGGACACAGCGGCTTCCAAGATTAG
TTGGAAAATCAGTAGCAAAAGATATTATATTTACTGGCCGCAAAGTTAGT
GGCAAAGATGCAA
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