CK939288

Overview
NameCK939288
Unique NameCK939288
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: MFPA_CUCSA (Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Cucumis sativus PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.658e-13
Identity = 51/154 (33.12%), Postives = 73/154 (47.40%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGAD------LKERRQMSPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            N+L  D+L  L  ++E          +++  +  K FS G D      L+  +   P+  +  +  +   F   EA R P +A ID             C  RI    A LGLPE  L IIPG GGTQRLPRLVG S A +++ T + + G++A
Sbjct:   29 NSLSFDVLFSLRDSYEQALRRDDVKAIVVTGAKGK-FSGGFDITAFGVLQGGKGEQPNVRNISIEMITDIF---EAARKPAVAAIDGLALGGGLEVAMACHARISTPTAQLGLPELQLGIIPGFGGTQRLPRLVGLSKALEMMLTSKPIKGQEA 178          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_VIBCH (Fatty acid oxidation complex subunit alpha OS=Vibrio cholerae GN=fadJ PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 7.658e-13
Identity = 49/138 (35.51%), Postives = 67/138 (48.55%), Query Frame = 2
Query:  161 FETISED-SSANVVMIRSSVPKVFSAGADLKERRQ-MSPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRIC--GEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            F T++E       ++I S  P  F AGAD++      S  E     +  +  F  L  L  P +A I              CD R+C   E   LGLPE  L ++PG+GGTQRLPRL+G   A D+I TG+++  K A
Sbjct:   43 FATLNEKRGQIKGLIIHSLKPDNFIAGADVRMLEACQSVHEAQALASQGQQMFQQLADLPFPVVAAIHGPCLGGGLELALACDYRVCTEDEVTRLGLPEVMLGLLPGSGGTQRLPRLIGLLPALDLILTGKQLRAKKA 180          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_VIBC3 (Fatty acid oxidation complex subunit alpha OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=fadJ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.658e-13
Identity = 49/138 (35.51%), Postives = 67/138 (48.55%), Query Frame = 2
Query:  161 FETISED-SSANVVMIRSSVPKVFSAGADLKERRQ-MSPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRIC--GEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            F T++E       ++I S  P  F AGAD++      S  E     +  +  F  L  L  P +A I              CD R+C   E   LGLPE  L ++PG+GGTQRLPRL+G   A D+I TG+++  K A
Sbjct:   43 FATLNEKRGQIKGLIIHSLKPDNFIAGADVRMLEACQSVHEAQALASQGQQMFQQLADLPFPVVAAIHGPCLGGGLELALACDYRVCTEDEVTRLGLPEVMLGLLPGSGGTQRLPRLIGLLPALDLILTGKQLRAKKA 180          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_VIBF1 (Fatty acid oxidation complex subunit alpha OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=fadJ PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.000e-12
Identity = 47/134 (35.07%), Postives = 68/134 (50.75%), Query Frame = 2
Query:  176 EDSSANV--VMIRSSVPKVFSAGADLKERRQ-MSPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            E+  A++  ++I+S  P  F AGAD+       + SE        +  F  +E L   T+A I              CD R+C +     LGLPE  L ++PG+GGTQRLPRL+G   + DII TG+++  K A
Sbjct:   47 EEQQAHIKGLVIQSGKPDNFIAGADINMIANCQNASEAQALAEKGQHLFQRIEDLPFATVAAIHGPCLGGGLELALACDYRVCSDDNKTKLGLPEVQLGLLPGSGGTQRLPRLIGLLPSLDIILTGKQLRPKTA 180          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_SHEB5 (Fatty acid oxidation complex subunit alpha OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=fadJ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.000e-12
Identity = 46/134 (34.33%), Postives = 66/134 (49.25%), Query Frame = 2
Query:  170 ISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPS-EIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            I  DSS   +++ S     F AGAD+        + +           F+ LEAL IP +A I              C  R+C +    +LG+PE  L ++PG GGTQRLPRLVG + A D++ TG+++  K A
Sbjct:   44 IKSDSSIRGLVLISGKKDSFVAGADISMLDACKTAGDAKALSQQGHVVFNELEALTIPVVAAIHGACLGGGLELALACHQRVCSDDGKTMLGVPEVQLGLLPGGGGTQRLPRLVGITTALDMMLTGKQIRPKQA 177          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_ENTS8 (Fatty acid oxidation complex subunit alpha OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=fadJ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.000e-12
Identity = 53/177 (29.94%), Postives = 81/177 (45.76%), Query Frame = 2
Query:   41 SQPLLNLLISENIVXINTSQFHEYQKNALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQ-MSPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            S    NL +  + V + T      + N L  +  R +    +T+ E+     V+  S+ P  F AGAD+       S  E     +  +   + + AL +  +A I              C  RIC +    LLGLPE  L ++PG+GGTQRLPRLVG S A ++I  G+++  + A
Sbjct:    3 STSAFNLQMRPDNVAVVTIDVPGEKMNTLKAEFARDVRAIVKTLRENRDLAGVVFISAKPDNFIAGADINMIAHCQSAQEAEALASQGQQIMAEIRALPVHVVAAIHGACLGGGLELALACHSRICTDDVKTLLGLPEVQLGLLPGSGGTQRLPRLVGVSTALEMILAGKQLRPRQA 179          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_SHEPA (Fatty acid oxidation complex subunit alpha OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=fadB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.000e-12
Identity = 49/144 (34.03%), Postives = 70/144 (48.61%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPSE---IHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGR 541
            N    + +  L  A ++I +DSS   +M+ SS    F  GAD+ E   +   E   +  ++      F+ LE L  PTI+ I+              D RI    A +GLPET L IIPG GGT RLPR++G   A + I +G+
Sbjct:   29 NKFDRETIDSLNAALDSIKQDSSIKALML-SSAKDAFVVGADITEFLGLFAEEDTVLQSWLEQANVVFNKLEDLPFPTISAINGFALGAGCETILATDFRIADTTARIGLPETKLGIIPGFGGTVRLPRVIGADNALEWITSGK 171          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_YERE8 (Fatty acid oxidation complex subunit alpha OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=fadJ PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.306e-12
Identity = 52/178 (29.21%), Postives = 78/178 (43.82%), Query Frame = 2
Query:   38 PSQPLLNLLISENIVXINTSQFHEYQKNALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQM-SPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            P+  +  L +  + + I T      + N L       +    +     S    ++I S  P  F AGAD+       +  +        +S  + + A  +P +A I              C  RIC +    +LGLPE  L ++PG+GGTQRLPRLVG S A D+I TGR+V  + A
Sbjct:   21 PAHAVFTLSVRPDNIGIITVDVVGDKVNTLKAKFAEQIAEILQQAQALSQLQGLVIISGKPDSFIAGADITMIAACHTAQDARILAQKGQSILAQIAAFPVPVVAAIHGACLGGGLELALACHSRICSQDDKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSKALDMILTGRQVRARQA 198          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_VIBPA (Fatty acid oxidation complex subunit alpha OS=Vibrio parahaemolyticus GN=fadJ PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.306e-12
Identity = 45/137 (32.85%), Postives = 66/137 (48.18%), Query Frame = 2
Query:  161 FETISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPS-EIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            F  + + S    ++I S  P  F AGAD++     + + E        +  F  L  L  P +A I              CD R+C +     LGLPE  L ++PG+GGTQRLPRL+G   + D+I TG+++  K A
Sbjct:   43 FAQLKDSSGIKGMIIHSLKPDNFVAGADVRMLEACTTANEAQALAKQGQELFQQLSDLPYPVVAAIHGPCLGGGLELALACDYRVCTDFDKTRLGLPEVQLGLLPGSGGTQRLPRLIGLLPSLDLILTGKQLRAKKA 179          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_SHELP (Fatty acid oxidation complex subunit alpha OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=fadJ PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.306e-12
Identity = 46/134 (34.33%), Postives = 69/134 (51.49%), Query Frame = 2
Query:  170 ISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPSEIHFYVNTL-RSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEA--ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            I  D+    V+I S     F AGAD+      + +E    ++      F  LE+L IP +A I+             C  R+C ++   +LGLPE  L ++PG GGTQRLPRLVG + + D++ TG+++  K A
Sbjct:   44 IKADAGIRGVVIISGKKDSFVAGADISMLDACATAEDARELSKQGHEVFFALESLSIPVVAAINGACLGGGLELALACHQRVCTDSNKTMLGLPEVQLGLLPGGGGTQRLPRLVGIAKSLDMMLTGKQLRAKQA 177          
The following BLAST results are available for this feature:
BLAST of CK939288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
MFPA_CUCSA7.658e-1333.12Glyoxysomal fatty acid beta-oxidation multifunctio... [more]
FADJ_VIBCH7.658e-1335.51Fatty acid oxidation complex subunit alpha OS=Vibr... [more]
FADJ_VIBC37.658e-1335.51Fatty acid oxidation complex subunit alpha OS=Vibr... [more]
FADJ_VIBF11.000e-1235.07Fatty acid oxidation complex subunit alpha OS=Vibr... [more]
FADJ_SHEB51.000e-1234.33Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_ENTS81.000e-1229.94Fatty acid oxidation complex subunit alpha OS=Ente... [more]
FADB_SHEPA1.000e-1234.03Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_YERE81.306e-1229.21Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADJ_VIBPA1.306e-1232.85Fatty acid oxidation complex subunit alpha OS=Vibr... [more]
FADJ_SHELP1.306e-1234.33Fatty acid oxidation complex subunit alpha OS=Shew... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_F11 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939288 ID=CK939288; Name=CK939288; organism=Citrus sinensis; type=EST; length=563bp
TGCCCTCCCAAATAACGAAAAAACCCATTGGGGCAAACCTTCCCAGCCAC
TTTTAAATTTATTAATCTCTGAAAATATTGTNNNNATCAACACTTCTCAG
TTTCATGAGTACCAAAAAAATGCGCTTGGAACGGATATGTTGAGAGGCTT
ATAGCATGCATTTGAAACTATCAGTGAGGATTCCTCTGCTAATGTTGTCA
TGATACGTAGCTCGGTTCCTAAAGTGTTCAGTGCTGGAGCTGATTTGAAG
GAACGCAGGCAAATGAGTCCATCTGAGATTCATTTTTATGTCAACACATT
GCGATCTACATTCTCCTTCTTAGAGGCACTTCGTATTCCAACCATTGCTG
TTATTGATGGAGCAGCATTGGGTGGTGGACTTGAAATGGCACTAGCATGT
GATCTTCGCATCTGTGGAGAAGCAGCACTATTGGGCTTGCCTGAAACAGG
ACTTGCTATAATTCCTGGGGCGGGTGGGACACAGCGGCTTCCAAGATTAG
TTGGAAAATCAGTAGCAAAAGATATTATATTTACTGGCCGCAAAGTTAGT
GGCAAAGATGCAA
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