CK939288

Overview
NameCK939288
Unique NameCK939288
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_KLEP7 (Fatty acid oxidation complex subunit alpha OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=fadJ PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.306e-12
Identity = 50/144 (34.72%), Postives = 69/144 (47.92%), Query Frame = 2
Query:  140 LRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKE-RRQMSPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICG--EAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            +RGL      + +D S   V+  S+    F AGAD+    R  S  E        +   + +  L IP IA I              C  RIC   E   LGLPE  L ++PG+GGTQRLPRL+G S A D++ TG+++  + A
Sbjct:   39 VRGL---IRQLRDDKSVRGVVFISAKADNFIAGADINMIARCRSAQEAEALARQGQQIMAEIHGLSIPVIAAIHGACLGGGLELALACHGRICSDDEKTRLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMMLTGKQLRPRQA 179          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_SHEB8 (Fatty acid oxidation complex subunit alpha OS=Shewanella baltica (strain OS185) GN=fadB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.306e-12
Identity = 50/151 (33.11%), Postives = 72/151 (47.68%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPSE---IHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            N    + L  L  A ++I +DS+   +++ SS    F  GAD+ E   +   +   +  +V    + F+ LE L  PT + I               D RI    A +GLPET L IIPG GGT RLPR++G   A + I TG+    +DA
Sbjct:   29 NKFDRETLASLDAALDSIKQDSNIKALVLTSS-KDTFIVGADITEFLGLFAQDDAVLLSWVEQANAVFNKLEDLPFPTASAIKGFALGGGCETILATDFRIADTTAKIGLPETKLGIIPGFGGTVRLPRVIGADNALEWITTGKDQRAEDA 178          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_SHEB5 (Fatty acid oxidation complex subunit alpha OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=fadB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.306e-12
Identity = 50/151 (33.11%), Postives = 72/151 (47.68%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPSE---IHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            N    + L  L  A ++I +DS+   +++ SS    F  GAD+ E   +   +   +  +V    + F+ LE L  PT + I               D RI    A +GLPET L IIPG GGT RLPR++G   A + I TG+    +DA
Sbjct:   29 NKFDRETLTSLDAALDSIKQDSNIKALVLTSS-KDTFIVGADITEFLGLFAQDDAVLLSWVEQANAVFNKLEDLPFPTASAIKGFALGGGCETILATDFRIADTTAKIGLPETKLGIIPGFGGTVRLPRVIGADNALEWITTGKDQRAEDA 178          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_SHEB2 (Fatty acid oxidation complex subunit alpha OS=Shewanella baltica (strain OS223) GN=fadB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.306e-12
Identity = 50/151 (33.11%), Postives = 72/151 (47.68%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPSE---IHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            N    + L  L  A ++I +DS+   +++ SS    F  GAD+ E   +   +   +  +V    + F+ LE L  PT + I               D RI    A +GLPET L IIPG GGT RLPR++G   A + I TG+    +DA
Sbjct:   29 NKFDRETLASLDAALDSIKQDSNIKALVLTSS-KDTFIVGADITEFLGLFAQDDAVLLSWVEQANAVFNKLEDLPFPTASAIKGFALGGGCETILTTDFRIADTTAKIGLPETKLGIIPGFGGTVRLPRVIGADNALEWITTGKDQRAEDA 178          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_KLEP7 (Fatty acid oxidation complex subunit alpha OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=fadB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.306e-12
Identity = 47/151 (31.13%), Postives = 73/151 (48.34%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            N L T  +  L HA + + + S    +++RS     F  GAD+ E   +      ++  +++   S F+ LE L +PTI+ ++              D R+      +GLPET L I+PG GG+ RLPRL+G   A +II  G+ V    A
Sbjct:   29 NKLDTATVASLGHALDVLEKQSDLKGLLLRSE-KAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTISAVNGYALGGGCECVLATDYRLATPDLRIGLPETKLGIMPGFGGSVRLPRLLGADSALEIIAAGKDVGADQA 178          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_ENT38 (Fatty acid oxidation complex subunit alpha OS=Enterobacter sp. (strain 638) GN=fadB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.306e-12
Identity = 46/151 (30.46%), Postives = 74/151 (49.01%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERR---QMSPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            N L T  +  L HA + + + S    +++RS     F  GAD+ E     Q+   ++  +++   S F+ LE L +PTI+ ++              D R+      +GLPET L I+PG GG+ R+PR++G   A +II  G+ V    A
Sbjct:   29 NKLDTATVASLGHALDVLEKQSDLKGLLLRSE-KAAFIVGADITEFLSLFQVPEEQLSQWLHFANSVFNRLEDLPVPTISAVNGYALGGGCECVLATDYRLATPDLRIGLPETKLGIMPGFGGSVRMPRMLGADSALEIIAAGKDVGADQA 178          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_SHESW (Fatty acid oxidation complex subunit alpha OS=Shewanella sp. (strain W3-18-1) GN=fadJ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.706e-12
Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 2
Query:  311 FSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            F+ LEAL+IP +A I              C  R+C +    +LG+PE  L ++PG GGTQRLPRLVG + A D++ TG+++  K A
Sbjct:   92 FNELEALKIPVVAAIHGACLGGGLELALACHQRVCSDDGKTMLGVPEVQLGLLPGGGGTQRLPRLVGITTALDMMLTGKQIRSKQA 177          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_SERP5 (Fatty acid oxidation complex subunit alpha OS=Serratia proteamaculans (strain 568) GN=fadJ PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.706e-12
Identity = 43/125 (34.40%), Postives = 64/125 (51.20%), Query Frame = 2
Query:  197 VMIRSSVPKVFSAGADLKERRQMSPS-EIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICG--EAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            ++I S  P  F AGAD+      + + E        +ST + + A ++P +A I              C  R+C   +   LGLPE  L ++PG+GGTQRLPRL+G S A D+I TG+ +  + A
Sbjct:   59 LVIVSGKPDSFIAGADITMIAACTTAKEAETLAKKGQSTLAQIAAFQVPVVAAIHGACLGGGLELALACHGRVCSLDDKTALGLPEVQLGLLPGSGGTQRLPRLIGASKALDMILTGKHIRARQA 183          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_VIBFM (Fatty acid oxidation complex subunit alpha OS=Vibrio fischeri (strain MJ11) GN=fadB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.706e-12
Identity = 42/124 (33.87%), Postives = 64/124 (51.61%), Query Frame = 2
Query:  200 MIRSSVPKVFSAGADLKERR---QMSPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            ++ SS    F  GAD+ E      +   E+  +++   + F+ LE + +PT++ I               D R+  E A +GLPET L I+PG GG+ RLPRL+G   A ++I TG+    KDA
Sbjct:   55 LLLSSDKSAFIVGADITEFLGLFDIPTEELSDWLHQANAIFNRLEDIPVPTLSAITGFALGGGCECVLATDFRLADETASIGLPETQLGIMPGWGGSVRLPRLIGADPAMEVITTGKPKRAKDA 178          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_VIBF1 (Fatty acid oxidation complex subunit alpha OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=fadB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.706e-12
Identity = 42/124 (33.87%), Postives = 64/124 (51.61%), Query Frame = 2
Query:  200 MIRSSVPKVFSAGADLKERR---QMSPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            ++ SS    F  GAD+ E      +   E+  +++   + F+ LE + +PT++ I               D R+  E A +GLPET L I+PG GG+ RLPRL+G   A ++I TG+    KDA
Sbjct:   55 LLLSSDKSAFIVGADITEFLGLFDIPTEELSDWLHQANAIFNRLEDIPVPTLSAITGFALGGGCECVLATDFRLADETASIGLPETQLGIMPGWGGSVRLPRLIGADPAMEVITTGKPKRAKDA 178          
The following BLAST results are available for this feature:
BLAST of CK939288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
FADJ_KLEP71.306e-1234.72Fatty acid oxidation complex subunit alpha OS=Kleb... [more]
FADB_SHEB81.306e-1233.11Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_SHEB51.306e-1233.11Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_SHEB21.306e-1233.11Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_KLEP71.306e-1231.13Fatty acid oxidation complex subunit alpha OS=Kleb... [more]
FADB_ENT381.306e-1230.46Fatty acid oxidation complex subunit alpha OS=Ente... [more]
FADJ_SHESW1.706e-1241.86Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_SERP51.706e-1234.40Fatty acid oxidation complex subunit alpha OS=Serr... [more]
FADB_VIBFM1.706e-1233.87Fatty acid oxidation complex subunit alpha OS=Vibr... [more]
FADB_VIBF11.706e-1233.87Fatty acid oxidation complex subunit alpha OS=Vibr... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_F11 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939288 ID=CK939288; Name=CK939288; organism=Citrus sinensis; type=EST; length=563bp
TGCCCTCCCAAATAACGAAAAAACCCATTGGGGCAAACCTTCCCAGCCAC
TTTTAAATTTATTAATCTCTGAAAATATTGTNNNNATCAACACTTCTCAG
TTTCATGAGTACCAAAAAAATGCGCTTGGAACGGATATGTTGAGAGGCTT
ATAGCATGCATTTGAAACTATCAGTGAGGATTCCTCTGCTAATGTTGTCA
TGATACGTAGCTCGGTTCCTAAAGTGTTCAGTGCTGGAGCTGATTTGAAG
GAACGCAGGCAAATGAGTCCATCTGAGATTCATTTTTATGTCAACACATT
GCGATCTACATTCTCCTTCTTAGAGGCACTTCGTATTCCAACCATTGCTG
TTATTGATGGAGCAGCATTGGGTGGTGGACTTGAAATGGCACTAGCATGT
GATCTTCGCATCTGTGGAGAAGCAGCACTATTGGGCTTGCCTGAAACAGG
ACTTGCTATAATTCCTGGGGCGGGTGGGACACAGCGGCTTCCAAGATTAG
TTGGAAAATCAGTAGCAAAAGATATTATATTTACTGGCCGCAAAGTTAGT
GGCAAAGATGCAA
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