CK939288

Overview
NameCK939288
Unique NameCK939288
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_ECOHS (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O9:H4 (strain HS) GN=fadJ PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.228e-12
Identity = 49/164 (29.88%), Postives = 76/164 (46.34%), Query Frame = 2
Query:   80 VXINTSQFHEYQKNALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPS-EIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            + I T    + + N L  +    +    + + E+     V+  S+ P  F AGAD+        + E        +   + + AL IP IA I              C  R+C +    +LGLPE  L ++PG+GGTQRLPRL+G S A ++I TG+++  K A
Sbjct:   16 IAIITIDVPDEKMNTLKAEFASQVRAIIKQLRENKELRGVVFISAKPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAEIHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQA 179          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_ECO7I (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=fadJ PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.228e-12
Identity = 45/134 (33.58%), Postives = 67/134 (50.00%), Query Frame = 2
Query:  170 ISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPS-EIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAA--LLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            + E+     V+  S+ P  F AGAD+        + E        +   + + AL +P IA I              C  R+C + A  +LGLPE  L ++PG+GGTQRLPRL+G S A ++I TG+++  K A
Sbjct:   46 LRENKELRGVVFISAKPDNFIAGADINMIGNCKTAQEAEVLARQGQQLMAEIHALPVPVIAAIHGACLGGGLELALACHGRVCTDDAKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQA 179          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_ECO45 (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=fadJ PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.228e-12
Identity = 46/134 (34.33%), Postives = 66/134 (49.25%), Query Frame = 2
Query:  170 ISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPS-EIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            I E+     V+  S+ P  F AGAD+        + E        +   + + AL IP IA I              C  R+C +    +LGLPE  L ++PG+GGTQRLPRL+G S A ++I TG+++  K A
Sbjct:   46 IRENKELRGVVFVSAKPDNFIAGADINMIGNCKTAQEAEVLARQGQQLMAEIHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQA 179          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_ECO27 (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=fadJ PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.228e-12
Identity = 46/134 (34.33%), Postives = 66/134 (49.25%), Query Frame = 2
Query:  170 ISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPS-EIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            I E+     V+  S+ P  F AGAD+        + E        +   + + AL IP IA I              C  R+C +    +LGLPE  L ++PG+GGTQRLPRL+G S A ++I TG+++  K A
Sbjct:   46 IRENKELRGVVFVSAKPDNFIAGADINMIGNCKTAQEAEVLARQGQQLMAEIHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQA 179          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_SHEPC (Fatty acid oxidation complex subunit alpha OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=fadJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.910e-12
Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 2
Query:  311 FSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            F+ LEAL+IP +A I              C  R+C +    +LG+PE  L ++PG GGTQRLPRLVG + A D++ TG+++  K A
Sbjct:   92 FNELEALKIPVVAAIHGACLGGGLELALACHQRVCSDDGKTMLGVPEVQLGLLPGGGGTQRLPRLVGITTALDMMLTGKQIRPKQA 177          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_SALTY (Fatty acid oxidation complex subunit alpha OS=Salmonella typhimurium GN=fadJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.910e-12
Identity = 46/134 (34.33%), Postives = 67/134 (50.00%), Query Frame = 2
Query:  170 ISEDSSANVVMIRSSVPKVFSAGADLKERRQ-MSPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            I E+ +   V+  S+    F AGAD+       +  E        +   + ++AL +P IA I              C  RIC +    +LGLPE  L ++PG+GGTQRLPRLVG S A D+I TG+++  + A
Sbjct:   46 IRENKALQGVVFISAKADNFIAGADINMIGHCQNAQEAETLARQGQQLMAEIQALPVPVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRARQA 179          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_SALTI (Fatty acid oxidation complex subunit alpha OS=Salmonella typhi GN=fadJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.910e-12
Identity = 46/134 (34.33%), Postives = 67/134 (50.00%), Query Frame = 2
Query:  170 ISEDSSANVVMIRSSVPKVFSAGADLKERRQ-MSPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            I E+ +   V+  S+    F AGAD+       +  E        +   + ++AL +P IA I              C  RIC +    +LGLPE  L ++PG+GGTQRLPRLVG S A D+I TG+++  + A
Sbjct:   46 IRENKALQGVVFISAKADNFIAGADINMIGHCQNAQEAETLARQGQQLMAEIQALPVPVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRARQA 179          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_SALSV (Fatty acid oxidation complex subunit alpha OS=Salmonella schwarzengrund (strain CVM19633) GN=fadJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.910e-12
Identity = 46/134 (34.33%), Postives = 67/134 (50.00%), Query Frame = 2
Query:  170 ISEDSSANVVMIRSSVPKVFSAGADLKERRQ-MSPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            I E+ +   V+  S+    F AGAD+       +  E        +   + ++AL +P IA I              C  RIC +    +LGLPE  L ++PG+GGTQRLPRLVG S A D+I TG+++  + A
Sbjct:   46 IRENKALQGVVFISAKADNFIAGADINMIGHCQNAQEAETLARQGQQLMAEIQALPVPVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRARQA 179          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_SALPB (Fatty acid oxidation complex subunit alpha OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=fadJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.910e-12
Identity = 46/134 (34.33%), Postives = 67/134 (50.00%), Query Frame = 2
Query:  170 ISEDSSANVVMIRSSVPKVFSAGADLKERRQ-MSPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            I E+ +   V+  S+    F AGAD+       +  E        +   + ++AL +P IA I              C  RIC +    +LGLPE  L ++PG+GGTQRLPRLVG S A D+I TG+++  + A
Sbjct:   46 IRENKALQGVVFISAKADNFIAGADINMIGHCQNAQEAETLARQGQQLMAEIQALPVPVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRARQA 179          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_SALNS (Fatty acid oxidation complex subunit alpha OS=Salmonella newport (strain SL254) GN=fadJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.910e-12
Identity = 46/134 (34.33%), Postives = 67/134 (50.00%), Query Frame = 2
Query:  170 ISEDSSANVVMIRSSVPKVFSAGADLKERRQ-MSPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            I E+ +   V+  S+    F AGAD+       +  E        +   + ++AL +P IA I              C  RIC +    +LGLPE  L ++PG+GGTQRLPRLVG S A D+I TG+++  + A
Sbjct:   46 IRENKALQGVVFISAKADNFIAGADINMIGHCQNAQEAETLARQGQQLMAEIQALPVPVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRARQA 179          
The following BLAST results are available for this feature:
BLAST of CK939288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
FADJ_ECOHS2.228e-1229.88Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ECO7I2.228e-1233.58Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ECO452.228e-1234.33Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ECO272.228e-1234.33Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_SHEPC2.910e-1241.86Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_SALTY2.910e-1234.33Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALTI2.910e-1234.33Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALSV2.910e-1234.33Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALPB2.910e-1234.33Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALNS2.910e-1234.33Fatty acid oxidation complex subunit alpha OS=Salm... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_F11 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939288 ID=CK939288; Name=CK939288; organism=Citrus sinensis; type=EST; length=563bp
TGCCCTCCCAAATAACGAAAAAACCCATTGGGGCAAACCTTCCCAGCCAC
TTTTAAATTTATTAATCTCTGAAAATATTGTNNNNATCAACACTTCTCAG
TTTCATGAGTACCAAAAAAATGCGCTTGGAACGGATATGTTGAGAGGCTT
ATAGCATGCATTTGAAACTATCAGTGAGGATTCCTCTGCTAATGTTGTCA
TGATACGTAGCTCGGTTCCTAAAGTGTTCAGTGCTGGAGCTGATTTGAAG
GAACGCAGGCAAATGAGTCCATCTGAGATTCATTTTTATGTCAACACATT
GCGATCTACATTCTCCTTCTTAGAGGCACTTCGTATTCCAACCATTGCTG
TTATTGATGGAGCAGCATTGGGTGGTGGACTTGAAATGGCACTAGCATGT
GATCTTCGCATCTGTGGAGAAGCAGCACTATTGGGCTTGCCTGAAACAGG
ACTTGCTATAATTCCTGGGGCGGGTGGGACACAGCGGCTTCCAAGATTAG
TTGGAAAATCAGTAGCAAAAGATATTATATTTACTGGCCGCAAAGTTAGT
GGCAAAGATGCAA
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