CK939288

Overview
NameCK939288
Unique NameCK939288
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_SALHS (Fatty acid oxidation complex subunit alpha OS=Salmonella heidelberg (strain SL476) GN=fadJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.910e-12
Identity = 46/134 (34.33%), Postives = 67/134 (50.00%), Query Frame = 2
Query:  170 ISEDSSANVVMIRSSVPKVFSAGADLKERRQ-MSPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            I E+ +   V+  S+    F AGAD+       +  E        +   + ++AL +P IA I              C  RIC +    +LGLPE  L ++PG+GGTQRLPRLVG S A D+I TG+++  + A
Sbjct:   46 IRENKALQGVVFISAKADNFIAGADINMIGHCQNAQEAETLARQGQQLMAEIQALPVPVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRARQA 179          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_SALG2 (Fatty acid oxidation complex subunit alpha OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=fadJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.910e-12
Identity = 46/134 (34.33%), Postives = 67/134 (50.00%), Query Frame = 2
Query:  170 ISEDSSANVVMIRSSVPKVFSAGADLKERRQ-MSPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            I E+ +   V+  S+    F AGAD+       +  E        +   + ++AL +P IA I              C  RIC +    +LGLPE  L ++PG+GGTQRLPRLVG S A D+I TG+++  + A
Sbjct:   46 IRENKALQGVVFISAKADNFIAGADINMIGHCQNAQEAETLARQGQQLMAEIQALPVPVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRARQA 179          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_SALEP (Fatty acid oxidation complex subunit alpha OS=Salmonella enteritidis PT4 (strain P125109) GN=fadJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.910e-12
Identity = 46/134 (34.33%), Postives = 67/134 (50.00%), Query Frame = 2
Query:  170 ISEDSSANVVMIRSSVPKVFSAGADLKERRQ-MSPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            I E+ +   V+  S+    F AGAD+       +  E        +   + ++AL +P IA I              C  RIC +    +LGLPE  L ++PG+GGTQRLPRLVG S A D+I TG+++  + A
Sbjct:   46 IRENKALQGVVFISAKADNFIAGADINMIGHCQNAQEAETLARQGQQLMAEIQALPVPVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRARQA 179          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_SALDC (Fatty acid oxidation complex subunit alpha OS=Salmonella dublin (strain CT_02021853) GN=fadJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.910e-12
Identity = 46/134 (34.33%), Postives = 67/134 (50.00%), Query Frame = 2
Query:  170 ISEDSSANVVMIRSSVPKVFSAGADLKERRQ-MSPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            I E+ +   V+  S+    F AGAD+       +  E        +   + ++AL +P IA I              C  RIC +    +LGLPE  L ++PG+GGTQRLPRLVG S A D+I TG+++  + A
Sbjct:   46 IRENKALQGVVFISAKADNFIAGADINMIGHCQNAQEAETLARQGQQLMAEIQALPVPVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRARQA 179          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_SALCH (Fatty acid oxidation complex subunit alpha OS=Salmonella choleraesuis GN=fadJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.910e-12
Identity = 46/134 (34.33%), Postives = 67/134 (50.00%), Query Frame = 2
Query:  170 ISEDSSANVVMIRSSVPKVFSAGADLKERRQ-MSPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            I E+ +   V+  S+    F AGAD+       +  E        +   + ++AL +P IA I              C  RIC +    +LGLPE  L ++PG+GGTQRLPRLVG S A D+I TG+++  + A
Sbjct:   46 IRENKALQGVVFISAKADNFIAGADINMIGHCQNAQEAETLARQGQQLMAEIQALPVPVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRARQA 179          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_SALA4 (Fatty acid oxidation complex subunit alpha OS=Salmonella agona (strain SL483) GN=fadJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.910e-12
Identity = 46/134 (34.33%), Postives = 67/134 (50.00%), Query Frame = 2
Query:  170 ISEDSSANVVMIRSSVPKVFSAGADLKERRQ-MSPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            I E+ +   V+  S+    F AGAD+       +  E        +   + ++AL +P IA I              C  RIC +    +LGLPE  L ++PG+GGTQRLPRLVG S A D+I TG+++  + A
Sbjct:   46 IRENKALQGVVFISAKADNFIAGADINMIGHCQNAQEAETLARQGQQLMAEIQALPVPVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRARQA 179          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_KLEP3 (Fatty acid oxidation complex subunit alpha OS=Klebsiella pneumoniae (strain 342) GN=fadB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.910e-12
Identity = 46/151 (30.46%), Postives = 73/151 (48.34%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            N L T  +  L HA + + + +    +++RS     F  GAD+ E   +      ++  +++   S F+ LE L +PTI+ ++              D R+      +GLPET L I+PG GG+ RLPRL+G   A +II  G+ V    A
Sbjct:   29 NKLDTATVASLGHALDVLEKQNDLKGLLLRSE-KAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTISAVNGYALGGGCECVLATDYRLATPDLRIGLPETKLGIMPGFGGSVRLPRLLGADSALEIIAAGKDVGADQA 178          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_ECOL5 (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=fadJ PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.800e-12
Identity = 45/134 (33.58%), Postives = 66/134 (49.25%), Query Frame = 2
Query:  170 ISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPS-EIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            + E+     V+  S+ P  F AGAD+        + E        +   + + AL IP IA I              C  R+C +    +LGLPE  L ++PG+GGTQRLPRL+G S A ++I TG+++  K A
Sbjct:   46 LRENKELRGVVFVSAKPDNFIAGADINMIGNCKTAQEAEVLARQGQQLMAEIHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQA 179          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_ECO81 (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O81 (strain ED1a) GN=fadJ PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.800e-12
Identity = 45/134 (33.58%), Postives = 66/134 (49.25%), Query Frame = 2
Query:  170 ISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPS-EIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            + E+     V+  S+ P  F AGAD+        + E        +   + + AL IP IA I              C  R+C +    +LGLPE  L ++PG+GGTQRLPRL+G S A ++I TG+++  K A
Sbjct:   46 LRENKELRGVVFVSAKPDNFIAGADINMIGNCKTAQEAEVLARQGQQLMAEIHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQA 179          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_VIBVY (Fatty acid oxidation complex subunit alpha OS=Vibrio vulnificus (strain YJ016) GN=fadB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.800e-12
Identity = 49/151 (32.45%), Postives = 72/151 (47.68%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            N L    L  L  A + ++  S    VM+ S   + F  GAD+ E   +      E+  ++    S F+ LE L +PT+AV+               DLRI  +   +GLPET L I+PG GG  RLPR++G   A +II  G+    ++A
Sbjct:   29 NKLDLATLASLDKALDALTAHSGLKGVMLTSD-KEAFIVGADITEFLGLFAKPEEELDQWLQFANSIFNKLEDLPVPTVAVVKGHTLGGGCECVLATDLRIGDKTTSIGLPETKLGIMPGFGGCVRLPRVIGADSAMEIITQGKACRAEEA 178          
The following BLAST results are available for this feature:
BLAST of CK939288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
FADJ_SALHS2.910e-1234.33Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALG22.910e-1234.33Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALEP2.910e-1234.33Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALDC2.910e-1234.33Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALCH2.910e-1234.33Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALA42.910e-1234.33Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADB_KLEP32.910e-1230.46Fatty acid oxidation complex subunit alpha OS=Kleb... [more]
FADJ_ECOL53.800e-1233.58Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ECO813.800e-1233.58Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADB_VIBVY3.800e-1232.45Fatty acid oxidation complex subunit alpha OS=Vibr... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_F11 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939288 ID=CK939288; Name=CK939288; organism=Citrus sinensis; type=EST; length=563bp
TGCCCTCCCAAATAACGAAAAAACCCATTGGGGCAAACCTTCCCAGCCAC
TTTTAAATTTATTAATCTCTGAAAATATTGTNNNNATCAACACTTCTCAG
TTTCATGAGTACCAAAAAAATGCGCTTGGAACGGATATGTTGAGAGGCTT
ATAGCATGCATTTGAAACTATCAGTGAGGATTCCTCTGCTAATGTTGTCA
TGATACGTAGCTCGGTTCCTAAAGTGTTCAGTGCTGGAGCTGATTTGAAG
GAACGCAGGCAAATGAGTCCATCTGAGATTCATTTTTATGTCAACACATT
GCGATCTACATTCTCCTTCTTAGAGGCACTTCGTATTCCAACCATTGCTG
TTATTGATGGAGCAGCATTGGGTGGTGGACTTGAAATGGCACTAGCATGT
GATCTTCGCATCTGTGGAGAAGCAGCACTATTGGGCTTGCCTGAAACAGG
ACTTGCTATAATTCCTGGGGCGGGTGGGACACAGCGGCTTCCAAGATTAG
TTGGAAAATCAGTAGCAAAAGATATTATATTTACTGGCCGCAAAGTTAGT
GGCAAAGATGCAA
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