CK939284

Overview
NameCK939284
Unique NameCK939284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2171 contig Csv1_Contig2171:1..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC23_RHOCR (Cytochrome c2 OS=Rhodoplanes cryptolactis PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.178e-12
Identity = 40/88 (45.45%), Postives = 50/88 (56.82%), Query Frame = 2
Query:   92 KCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAV-IWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 352
            +C  CH V  G     GP+L GLFG + G  PG+ YS A+   A    +E  L  YL +PK  +PG KMVF GLK P D   ++AYLK
Sbjct:    9 QCQACHKVEAGEDGV-GPSLFGLFGHKLGQAPGFKYSEAHLKFAQQTVDEPFLTKYLADPKASLPGNKMVFAGLKNPDDVKAVLAYLK 95          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC22_RHOCE (Cytochrome c2 iso-2 OS=Rhodospirillum centenum PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 43/117 (36.75%), Postives = 60/117 (51.28%), Query Frame = 2
Query:   56 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKG---MAVIWEEKTLYNYLLNPKKYI--------------PGTKMVFPGLKKPQDRADLIAYLKE 355
            G+P  GE +FK KC  CH V   A +  GP L G+  RQ+GT PG++YSA N       + W  + +  YL +P  ++                TKMVF  L   Q+R D++AYLK+
Sbjct:    3 GDPAKGEAVFK-KCMACHRVGPDAKNLVGPALTGVIDRQAGTAPGFNYSAINHAAGEAGLHWTPENIIAYLPDPNAFLRKFLADAGHAEQAKGSTKMVFK-LPDEQERKDVVAYLKQ 117          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC21_RHOCE (Cytochrome c2 iso-1 OS=Rhodospirillum centenum PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 43/116 (37.07%), Postives = 59/116 (50.86%), Query Frame = 2
Query:   56 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKG---MAVIWEEKTLYNYLLNPKKYI--------------PGTKMVFPGLKKPQDRADLIAYLK 352
            G+P  GE +FK KC  CH +   A +  GP L G+ GRQ+G  PG+SYSA N       + W  + +  YL +P  ++                TKMVF  L   Q+R D++AYLK
Sbjct:    3 GDPVKGEAVFK-KCMACHRIGPDAKNLVGPVLTGVVGRQAGVAPGFSYSALNHAAGEAGLHWTAENIMAYLPDPNAFLRKFVTDAGNPEAAKGSTKMVFK-LPNEQERKDVVAYLK 116          
The following BLAST results are available for this feature:
BLAST of CK939284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
CYC23_RHOCR8.178e-1245.45Cytochrome c2 OS=Rhodoplanes cryptolactis PE=1 SV=... [more]
CYC22_RHOCE1.395e-1136.75Cytochrome c2 iso-2 OS=Rhodospirillum centenum PE=... [more]
CYC21_RHOCE1.395e-1137.07Cytochrome c2 iso-1 OS=Rhodospirillum centenum PE=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_G05 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939284 ID=CK939284; Name=CK939284; organism=Citrus sinensis; type=EST; length=730bp
GGGGAATTCGATTTTAACCACAATCAAAATGGCGTCGTTTGAGGAAGCTC
CACCTGGTAATCCAAAGGCCGGGGAGAAAATCTTCAAGACCAAGTGCGCT
CAGTGCCACACCGTCGTGAAAGGCGCTGGTCACAAACAAGGACCAAATTT
GAATGGACTTTTCGGGAGACAGTCCGGGACAACTCCCGGGTACTCCTATT
CAGCTGCTAACAAGGGTATGGCTGTTATTTGGGAAGAGAAAACGTTGTAC
AATTACTTGCTTAACCCCAAGAAGTATATTCCTGGAACAAAGATGGTCTT
CCCTGGATTGAAGAAGCCTCAGGATCGTGCAGACCTCATTGCCTATTTGA
AGGAGTCAACAGCCTGATTTTTGCTTAGTGTGGGCTATTTTGCAACCATG
GGAAGAGTATGGTCCCTGATGATTCAATAATTTTTTGTTTTTGGAAGAAA
AAATGTTGTTCAAATGAGAATGTTCAAAATGTTTTACTCTTTTTAGCCAT
AGACAATTGGATAAAATGTTCTTCCAAAGAAACTTTTCTTTGAGAGGCAT
TTCGCANATTTTGATGATTNNNAAGCGCTATGTATCCTAATTTTGCCACT
TAATTTGTTATAATGGAATTTTAAGTTGCATATTCTTCTTTGAGTGGACT
TTCTTGGATTCAAAGATGTCATTACATTTGGATATGAAATTTAAGTTTTT
TGTGTAAAAAAAAAAAAAAAAAAAAAAAAN
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