CK939284

Overview
NameCK939284
Unique NameCK939284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2171 contig Csv1_Contig2171:1..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_MACMU (Cytochrome c OS=Macaca mulatta GN=CYCS PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 2.000e-34
Identity = 66/102 (64.71%), Postives = 81/102 (79.41%), Query Frame = 2
Query:   56 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 361
            G+ + G+KIF  KC+QCHTV KG  HK GPNL+GLFGR++G  PGYSY+AANK   + W E TL  YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGITWGEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 103          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_THEAN (Cytochrome c OS=Theileria annulata GN=TA12950 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.613e-34
Identity = 67/105 (63.81%), Postives = 84/105 (80.00%), Query Frame = 2
Query:   50 PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 364
            P G+P  G K+FK+KCAQCHT+ KG   KQGPNL G +GR+SG+T  Y+YS ANK   ++W +K L+ YL+NPK+YIPGTKMVF GLKK QDRADLIAYLKE+++
Sbjct:   11 PEGDPAKGAKLFKSKCAQCHTINKGGSVKQGPNLFGFYGRKSGSTD-YAYSDANKNSGIVWSDKHLFVYLVNPKQYIPGTKMVFAGLKKEQDRADLIAYLKEASS 114          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_SARPE (Cytochrome c OS=Sarcophaga peregrina PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 4.456e-34
Identity = 64/104 (61.54%), Postives = 79/104 (75.96%), Query Frame = 2
Query:   50 PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 361
            P G+ + G+KIF  +CAQCHTV  G  HK GPNL+GLFGR++G  PG++Y+ ANK   + W E TL+ YL NPKKYIPGTKM+F GLKKP +R DLIAYLK +T
Sbjct:    4 PAGDVEKGKKIFVQRCAQCHTVEAGGKHKVGPNLHGLFGRKTGQAPGFAYTDANKAKGITWNEDTLFEYLENPKKYIPGTKMIFAGLKKPNERGDLIAYLKSAT 107          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC2_RAT (Cytochrome c, testis-specific OS=Rattus norvegicus GN=Cyct PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 4.456e-34
Identity = 67/103 (65.05%), Postives = 80/103 (77.67%), Query Frame = 2
Query:   56 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 364
            G+ +AG+KIF  KCAQCHTV KG  HK GPNL GLFGR++G  PG+SY+ ANK   VIW E+TL  YL NPKKYIPGTKM+F G+KK  +R DLI YLKE+T+
Sbjct:    2 GDAEAGKKIFIQKCAQCHTVEKGGKHKTGPNLWGLFGRKTGQAPGFSYTDANKNKGVIWTEETLMEYLENPKKYIPGTKMIFAGIKKKSEREDLIQYLKEATS 104          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_MACGI (Cytochrome c OS=Macropus giganteus GN=CYCS PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.820e-34
Identity = 65/102 (63.73%), Postives = 80/102 (78.43%), Query Frame = 2
Query:   56 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 361
            G+ + G+KIF  KCAQCHTV KG  HK GPNLNG+FGR++G  PG++Y+ ANK   +IW E TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLNGIFGRKTGQAPGFTYTDANKNKGIIWGEDTLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKKAT 103          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_LUCCU (Cytochrome c OS=Lucilia cuprina PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.820e-34
Identity = 63/104 (60.58%), Postives = 80/104 (76.92%), Query Frame = 2
Query:   50 PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 361
            P G+ + G+KIF  +CAQCHTV  G  HK GPNL+GLFGR++G  PG++Y+ ANK   + W++ TL+ YL NPKKYIPGTKM+F GLKKP +R DLIAYLK +T
Sbjct:    4 PAGDVEKGKKIFVQRCAQCHTVEAGGKHKVGPNLHGLFGRKTGQAPGFAYTNANKAKGITWQDDTLFEYLENPKKYIPGTKMIFAGLKKPNERGDLIAYLKSAT 107          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC2_MOUSE (Cytochrome c, testis-specific OS=Mus musculus GN=Cyct PE=1 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 5.820e-34
Identity = 66/103 (64.08%), Postives = 80/103 (77.67%), Query Frame = 2
Query:   56 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 364
            G+ +AG+KIF  KCAQCHTV KG  HK GPNL GLFGR++G  PG+SY+ ANK   VIW E+TL  YL NPKKYIPGTKM+F G+KK  +R DLI YLK++T+
Sbjct:    2 GDAEAGKKIFVQKCAQCHTVEKGGKHKTGPNLWGLFGRKTGQAPGFSYTDANKNKGVIWSEETLMEYLENPKKYIPGTKMIFAGIKKKSEREDLIKYLKQATS 104          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_MANSE (Cytochrome c OS=Manduca sexta PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 7.601e-34
Identity = 65/104 (62.50%), Postives = 79/104 (75.96%), Query Frame = 2
Query:   50 PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 361
            P G+ + G+K+F  +CAQCHTV  G  HK GPNL+G FGR++G  PG+SYS ANK   + W E TL+ YL NPKKYIPGTKMVF GLKK  +RADLIAYLK++T
Sbjct:    4 PAGDVEKGKKLFVQRCAQCHTVEAGGKHKIGPNLHGFFGRKTGQAPGFSYSDANKAKGITWNEDTLFEYLENPKKYIPGTKMVFAGLKKANERADLIAYLKQAT 107          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_HIPAM (Cytochrome c OS=Hippopotamus amphibius GN=CYCS PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 7.601e-34
Identity = 65/102 (63.73%), Postives = 81/102 (79.41%), Query Frame = 2
Query:   56 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 361
            G+ + G+KIF  KCAQCHTV KG  HK GPNL+GLFGR++G +PG+SY+ ANK   + W E+TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQSPGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKQAT 103          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_ALLMI (Cytochrome c OS=Alligator mississippiensis PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 9.928e-34
Identity = 65/103 (63.11%), Postives = 80/103 (77.67%), Query Frame = 2
Query:   56 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 364
            G+ + G+KIF  KCAQCHTV KG  HK GPNL+GL GR++G  PG+SY+ ANK   + W E+TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLKE+T+
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLIGRKTGQAPGFSYTEANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKPERADLIAYLKEATS 104          
The following BLAST results are available for this feature:
BLAST of CK939284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
CYC_MACMU2.000e-3464.71Cytochrome c OS=Macaca mulatta GN=CYCS PE=1 SV=2[more]
CYC_THEAN2.613e-3463.81Cytochrome c OS=Theileria annulata GN=TA12950 PE=3... [more]
CYC_SARPE4.456e-3461.54Cytochrome c OS=Sarcophaga peregrina PE=1 SV=2[more]
CYC2_RAT4.456e-3465.05Cytochrome c, testis-specific OS=Rattus norvegicus... [more]
CYC_MACGI5.820e-3463.73Cytochrome c OS=Macropus giganteus GN=CYCS PE=1 SV... [more]
CYC_LUCCU5.820e-3460.58Cytochrome c OS=Lucilia cuprina PE=1 SV=2[more]
CYC2_MOUSE5.820e-3464.08Cytochrome c, testis-specific OS=Mus musculus GN=C... [more]
CYC_MANSE7.601e-3462.50Cytochrome c OS=Manduca sexta PE=1 SV=2[more]
CYC_HIPAM7.601e-3463.73Cytochrome c OS=Hippopotamus amphibius GN=CYCS PE=... [more]
CYC_ALLMI9.928e-3463.11Cytochrome c OS=Alligator mississippiensis PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_G05 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939284 ID=CK939284; Name=CK939284; organism=Citrus sinensis; type=EST; length=730bp
GGGGAATTCGATTTTAACCACAATCAAAATGGCGTCGTTTGAGGAAGCTC
CACCTGGTAATCCAAAGGCCGGGGAGAAAATCTTCAAGACCAAGTGCGCT
CAGTGCCACACCGTCGTGAAAGGCGCTGGTCACAAACAAGGACCAAATTT
GAATGGACTTTTCGGGAGACAGTCCGGGACAACTCCCGGGTACTCCTATT
CAGCTGCTAACAAGGGTATGGCTGTTATTTGGGAAGAGAAAACGTTGTAC
AATTACTTGCTTAACCCCAAGAAGTATATTCCTGGAACAAAGATGGTCTT
CCCTGGATTGAAGAAGCCTCAGGATCGTGCAGACCTCATTGCCTATTTGA
AGGAGTCAACAGCCTGATTTTTGCTTAGTGTGGGCTATTTTGCAACCATG
GGAAGAGTATGGTCCCTGATGATTCAATAATTTTTTGTTTTTGGAAGAAA
AAATGTTGTTCAAATGAGAATGTTCAAAATGTTTTACTCTTTTTAGCCAT
AGACAATTGGATAAAATGTTCTTCCAAAGAAACTTTTCTTTGAGAGGCAT
TTCGCANATTTTGATGATTNNNAAGCGCTATGTATCCTAATTTTGCCACT
TAATTTGTTATAATGGAATTTTAAGTTGCATATTCTTCTTTGAGTGGACT
TTCTTGGATTCAAAGATGTCATTACATTTGGATATGAAATTTAAGTTTTT
TGTGTAAAAAAAAAAAAAAAAAAAAAAAAN
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