CK939284

Overview
NameCK939284
Unique NameCK939284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2171 contig Csv1_Contig2171:1..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC2_BOVIN (Cytochrome c 2 OS=Bos taurus GN=CYCT PE=3 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 3.772e-33
Identity = 65/100 (65.00%), Postives = 78/100 (78.00%), Query Frame = 2
Query:   65 KAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 364
            +AG+KIF  KCAQCHTV KG  HK GPNL GLFGR++G  PG+SY+ ANK   +IW E+TL  YL NPKKYIPGTKM+F GLKK  +R DLI YLK++T+
Sbjct:    5 EAGKKIFIQKCAQCHTVEKGGKHKTGPNLWGLFGRKTGQAPGFSYTEANKNKGIIWGEQTLMEYLENPKKYIPGTKMIFAGLKKKSEREDLIEYLKQATS 104          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_THEPA (Cytochrome c OS=Theileria parva GN=TP02_0396 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.927e-33
Identity = 65/105 (61.90%), Postives = 82/105 (78.10%), Query Frame = 2
Query:   50 PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 364
            P G+   G K+FK+KCAQCHT+ KG   KQGPNL G +GR+SG +  Y+YS ANK   ++W +K L+ YL+NPK+YIPGTKMVF GLKK QDRADLIAYLKE+++
Sbjct:   11 PEGDSSKGAKLFKSKCAQCHTINKGGSVKQGPNLYGFYGRKSGASD-YAYSDANKNSGIVWSDKHLFVYLVNPKQYIPGTKMVFAGLKKEQDRADLIAYLKEASS 114          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_SHEEP (Cytochrome c OS=Ovis aries GN=CYCS PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.927e-33
Identity = 64/102 (62.75%), Postives = 79/102 (77.45%), Query Frame = 2
Query:   56 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 361
            G+ + G+KIF  KCAQCHTV KG  HK GPNL+GLFGR++G  PG+SY+ ANK   + W E+TL  YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKAT 103          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_PIG (Cytochrome c OS=Sus scrofa GN=CYCS PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.927e-33
Identity = 64/102 (62.75%), Postives = 79/102 (77.45%), Query Frame = 2
Query:   56 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 361
            G+ + G+KIF  KCAQCHTV KG  HK GPNL+GLFGR++G  PG+SY+ ANK   + W E+TL  YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKAT 103          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_HAEIR (Cytochrome c OS=Haematobia irritans PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.927e-33
Identity = 62/104 (59.62%), Postives = 79/104 (75.96%), Query Frame = 2
Query:   50 PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 361
            P G+ + G+KIF  +CAQCHTV  G  HK GPNL+GLFGR++G   G++Y+ ANK   + W++ TL+ YL NPKKYIPGTKM+F GLKKP +R DLIAYLK +T
Sbjct:    4 PAGDVEKGKKIFVQRCAQCHTVEAGGKHKVGPNLHGLFGRKTGQAAGFAYTNANKAKGITWQDDTLFEYLENPKKYIPGTKMIFAGLKKPNERGDLIAYLKSAT 107          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_DRONO (Cytochrome c OS=Dromaius novae-hollandiae GN=CYC PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.927e-33
Identity = 64/103 (62.14%), Postives = 79/103 (76.70%), Query Frame = 2
Query:   56 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 364
            G+ + G+KIF  KC+QCHTV KG  HK GPNLNGLFGR++G   G+SY+ ANK   + W E TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T+
Sbjct:    2 GDIEKGKKIFVQKCSQCHTVEKGGKHKTGPNLNGLFGRKTGQAEGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKSERADLIAYLKDATS 104          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_CYPCA (Cytochrome c iso-1/iso-2 OS=Cyprinus carpio GN=cyc PE=1 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 4.927e-33
Identity = 63/103 (61.17%), Postives = 80/103 (77.67%), Query Frame = 2
Query:   56 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 364
            G+ + G+K+F  KCAQCHTV  G  HK GPNL GLFGR++G  PG+SY+ ANK   ++W+E+TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLK +T+
Sbjct:    2 GDVEKGKKVFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAPGFSYTDANKSKGIVWBEZTLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKSATS 104          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_CHESE (Cytochrome c OS=Chelydra serpentina PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.927e-33
Identity = 64/103 (62.14%), Postives = 79/103 (76.70%), Query Frame = 2
Query:   56 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 364
            G+ + G+KIF  KCAQCHTV KG  HK GPNLNGL GR++G   G+SY+ ANK   + W E+TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T+
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLNGLIGRKTGQAEGFSYTEANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKAERADLIAYLKDATS 104          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_CANAL (Cytochrome c OS=Candida albicans GN=CYC1 PE=3 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 4.927e-33
Identity = 67/111 (60.36%), Postives = 83/111 (74.77%), Query Frame = 2
Query:   32 ASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 364
            A FE+   G+ K G  +FKT+C QCHTV KG  HK GPNL+G+FGR+SG   GYSY+ ANK   V W E+T+ +YL NPKKYIPGTKM F GLKKP+DR DL+ YLK++T+
Sbjct:    3 APFEK---GSEKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGVFGRKSGLAEGYSYTDANKKKGVEWTEQTMSDYLENPKKYIPGTKMAFGGLKKPKDRNDLVTYLKKATS 110          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_BOVIN (Cytochrome c OS=Bos taurus GN=CYCS PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.927e-33
Identity = 64/102 (62.75%), Postives = 79/102 (77.45%), Query Frame = 2
Query:   56 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 361
            G+ + G+KIF  KCAQCHTV KG  HK GPNL+GLFGR++G  PG+SY+ ANK   + W E+TL  YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKAT 103          
The following BLAST results are available for this feature:
BLAST of CK939284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
CYC2_BOVIN3.772e-3365.00Cytochrome c 2 OS=Bos taurus GN=CYCT PE=3 SV=3[more]
CYC_THEPA4.927e-3361.90Cytochrome c OS=Theileria parva GN=TP02_0396 PE=3 ... [more]
CYC_SHEEP4.927e-3362.75Cytochrome c OS=Ovis aries GN=CYCS PE=1 SV=2[more]
CYC_PIG4.927e-3362.75Cytochrome c OS=Sus scrofa GN=CYCS PE=1 SV=2[more]
CYC_HAEIR4.927e-3359.62Cytochrome c OS=Haematobia irritans PE=1 SV=2[more]
CYC_DRONO4.927e-3362.14Cytochrome c OS=Dromaius novae-hollandiae GN=CYC P... [more]
CYC_CYPCA4.927e-3361.17Cytochrome c iso-1/iso-2 OS=Cyprinus carpio GN=cyc... [more]
CYC_CHESE4.927e-3362.14Cytochrome c OS=Chelydra serpentina PE=1 SV=2[more]
CYC_CANAL4.927e-3360.36Cytochrome c OS=Candida albicans GN=CYC1 PE=3 SV=3[more]
CYC_BOVIN4.927e-3362.75Cytochrome c OS=Bos taurus GN=CYCS PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_G05 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939284 ID=CK939284; Name=CK939284; organism=Citrus sinensis; type=EST; length=730bp
GGGGAATTCGATTTTAACCACAATCAAAATGGCGTCGTTTGAGGAAGCTC
CACCTGGTAATCCAAAGGCCGGGGAGAAAATCTTCAAGACCAAGTGCGCT
CAGTGCCACACCGTCGTGAAAGGCGCTGGTCACAAACAAGGACCAAATTT
GAATGGACTTTTCGGGAGACAGTCCGGGACAACTCCCGGGTACTCCTATT
CAGCTGCTAACAAGGGTATGGCTGTTATTTGGGAAGAGAAAACGTTGTAC
AATTACTTGCTTAACCCCAAGAAGTATATTCCTGGAACAAAGATGGTCTT
CCCTGGATTGAAGAAGCCTCAGGATCGTGCAGACCTCATTGCCTATTTGA
AGGAGTCAACAGCCTGATTTTTGCTTAGTGTGGGCTATTTTGCAACCATG
GGAAGAGTATGGTCCCTGATGATTCAATAATTTTTTGTTTTTGGAAGAAA
AAATGTTGTTCAAATGAGAATGTTCAAAATGTTTTACTCTTTTTAGCCAT
AGACAATTGGATAAAATGTTCTTCCAAAGAAACTTTTCTTTGAGAGGCAT
TTCGCANATTTTGATGATTNNNAAGCGCTATGTATCCTAATTTTGCCACT
TAATTTGTTATAATGGAATTTTAAGTTGCATATTCTTCTTTGAGTGGACT
TTCTTGGATTCAAAGATGTCATTACATTTGGATATGAAATTTAAGTTTTT
TGTGTAAAAAAAAAAAAAAAAAAAAAAAAN
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