CK939284

Overview
NameCK939284
Unique NameCK939284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2171 contig Csv1_Contig2171:1..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC2_XENTR (Cytochrome c, testis-specific OS=Xenopus tropicalis GN=cyct PE=3 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 4.927e-33
Identity = 63/103 (61.17%), Postives = 80/103 (77.67%), Query Frame = 2
Query:   56 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 364
            G+ + G+KIF  KC+QCHTV KG  HK GPNL+GLFGR++G   G+SY+ ANK   ++W+E TL  YL NPKKYIPGTKM+F G+KK  +R DLIAYLK+ST+
Sbjct:    2 GDAEKGKKIFVQKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAEGFSYTDANKNKGIVWDEGTLLEYLENPKKYIPGTKMIFAGIKKKGERQDLIAYLKQSTS 104          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_TRACR (Cytochrome c OS=Trachypithecus cristatus GN=CYCS PE=3 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 6.435e-33
Identity = 64/102 (62.75%), Postives = 79/102 (77.45%), Query Frame = 2
Query:   56 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 361
            G+ + G+KI   KC+QCHTV KG  HK GPN +GLFGR++G  PGYSY+AANK   + W E TL  YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct:    2 GDVEKGKKILIMKCSQCHTVEKGGKHKTGPNHHGLFGRKTGQAPGYSYTAANKNKGITWGEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 103          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_CROVV (Cytochrome c OS=Crotalus viridis viridis PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 6.435e-33
Identity = 65/103 (63.11%), Postives = 78/103 (75.73%), Query Frame = 2
Query:   56 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 364
            G+ + G+KIF  KC  CHTV +G  HK GPNL+GLFGR++G   GYSY+AANK   +IW + TL  YL NPKKYIPGTKMVF GLK  ++R DLIAYLKE+TA
Sbjct:    2 GDVEKGKKIFSMKCGTCHTVEEGGKHKTGPNLHGLFGRKTGQAVGYSYTAANKNKGIIWGDDTLMEYLENPKKYIPGTKMVFTGLKSKKERTDLIAYLKEATA 104          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_CROAT (Cytochrome c OS=Crotalus atrox PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 6.435e-33
Identity = 65/103 (63.11%), Postives = 78/103 (75.73%), Query Frame = 2
Query:   56 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 364
            G+ + G+KIF  KC  CHTV +G  HK GPNL+GLFGR++G   GYSY+AANK   +IW + TL  YL NPKKYIPGTKMVF GLK  ++R DLIAYLKE+TA
Sbjct:    2 GDVEKGKKIFSMKCGTCHTVEEGGKHKTGPNLHGLFGRKTGQAVGYSYTAANKNKGIIWGDDTLMEYLENPKKYIPGTKMVFTGLKSKKERTDLIAYLKEATA 104          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_CROAD (Cytochrome c OS=Crotalus adamanteus PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 6.435e-33
Identity = 65/103 (63.11%), Postives = 78/103 (75.73%), Query Frame = 2
Query:   56 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 364
            G+ + G+KIF  KC  CHTV +G  HK GPNL+GLFGR++G   GYSY+AANK   +IW + TL  YL NPKKYIPGTKMVF GLK  ++R DLIAYLKE+TA
Sbjct:    2 GDVEKGKKIFSMKCGTCHTVEEGGKHKTGPNLHGLFGRKTGQAVGYSYTAANKNKGIIWGDDTLMEYLENPKKYIPGTKMVFTGLKSKKERTDLIAYLKEATA 104          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_ANAPL (Cytochrome c OS=Anas platyrhynchos GN=CYC PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 6.435e-33
Identity = 64/103 (62.14%), Postives = 79/103 (76.70%), Query Frame = 2
Query:   56 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 364
            G+ + G+KIF  KC+QCHTV KG  HK GPNL+GLFGR++G   G+SY+ ANK   + W E TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++TA
Sbjct:    2 GDVEKGKKIFVQKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAEGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKSERADLIAYLKDATA 104          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC1A_XENLA (Cytochrome c, somatic A OS=Xenopus laevis GN=cycs-A PE=3 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 6.435e-33
Identity = 64/103 (62.14%), Postives = 79/103 (76.70%), Query Frame = 2
Query:   56 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 364
            G+ + G+KIF  KCAQCHTV K   HK GPNL GLFGR++G  PG+SY+ ANK   ++W E TL+ YL NPKKYIPGTKM+F G+KK  +R DLIAYLK+ST+
Sbjct:    2 GDAEKGKKIFIQKCAQCHTVEKTGKHKTGPNLWGLFGRKTGQAPGFSYTDANKSKGIVWGEDTLFEYLENPKKYIPGTKMIFAGIKKKNERLDLIAYLKKSTS 104          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_LAMTR (Cytochrome c OS=Lampetra tridentata GN=cyc PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 8.404e-33
Identity = 61/103 (59.22%), Postives = 81/103 (78.64%), Query Frame = 2
Query:   56 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 364
            G+ + G+K+F  KC+QCHTV K   HK GPNL+GLFGR++G  PG+SY+ ANK   ++W ++TL+ YL NPKKYIPGTKM+F G+KK  +R DLIAYLK+ST+
Sbjct:    2 GDVEKGKKVFVQKCSQCHTVEKAGKHKTGPNLSGLFGRKTGQAPGFSYTDANKSKGIVWNQETLFVYLENPKKYIPGTKMIFAGIKKEGERKDLIAYLKKSTS 104          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_VARVA (Cytochrome c OS=Varanus varius PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.098e-32
Identity = 64/103 (62.14%), Postives = 79/103 (76.70%), Query Frame = 2
Query:   56 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 364
            G+ + G+KIF  KC+QCHTV KG  HK GPNL+ LFGR++G   G+SY+AANK   + W E TL+ YL NPKKYIPGTKM+F G+KK  +R DLIAYLKE+TA
Sbjct:    2 GDVEKGKKIFVQKCSQCHTVEKGGKHKTGPNLHQLFGRKTGEAEGFSYTAANKNKGITWGEDTLFEYLENPKKYIPGTKMIFAGIKKKTERDDLIAYLKEATA 104          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_COLLI (Cytochrome c OS=Columba livia GN=CYC PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.098e-32
Identity = 64/103 (62.14%), Postives = 79/103 (76.70%), Query Frame = 2
Query:   56 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 364
            G+ + G+KIF  KC+QCHTV KG  HK GPNL+GLFGR++G   G+SY+ ANK   + W E TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++TA
Sbjct:    2 GDIEKGKKIFVQKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAEGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKAERADLIAYLKQATA 104          
The following BLAST results are available for this feature:
BLAST of CK939284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
CYC2_XENTR4.927e-3361.17Cytochrome c, testis-specific OS=Xenopus tropicali... [more]
CYC_TRACR6.435e-3362.75Cytochrome c OS=Trachypithecus cristatus GN=CYCS P... [more]
CYC_CROVV6.435e-3363.11Cytochrome c OS=Crotalus viridis viridis PE=1 SV=2[more]
CYC_CROAT6.435e-3363.11Cytochrome c OS=Crotalus atrox PE=1 SV=2[more]
CYC_CROAD6.435e-3363.11Cytochrome c OS=Crotalus adamanteus PE=1 SV=2[more]
CYC_ANAPL6.435e-3362.14Cytochrome c OS=Anas platyrhynchos GN=CYC PE=1 SV=... [more]
CYC1A_XENLA6.435e-3362.14Cytochrome c, somatic A OS=Xenopus laevis GN=cycs-... [more]
CYC_LAMTR8.404e-3359.22Cytochrome c OS=Lampetra tridentata GN=cyc PE=1 SV... [more]
CYC_VARVA1.098e-3262.14Cytochrome c OS=Varanus varius PE=1 SV=2[more]
CYC_COLLI1.098e-3262.14Cytochrome c OS=Columba livia GN=CYC PE=1 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004752_G05 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939284 ID=CK939284; Name=CK939284; organism=Citrus sinensis; type=EST; length=730bp
GGGGAATTCGATTTTAACCACAATCAAAATGGCGTCGTTTGAGGAAGCTC
CACCTGGTAATCCAAAGGCCGGGGAGAAAATCTTCAAGACCAAGTGCGCT
CAGTGCCACACCGTCGTGAAAGGCGCTGGTCACAAACAAGGACCAAATTT
GAATGGACTTTTCGGGAGACAGTCCGGGACAACTCCCGGGTACTCCTATT
CAGCTGCTAACAAGGGTATGGCTGTTATTTGGGAAGAGAAAACGTTGTAC
AATTACTTGCTTAACCCCAAGAAGTATATTCCTGGAACAAAGATGGTCTT
CCCTGGATTGAAGAAGCCTCAGGATCGTGCAGACCTCATTGCCTATTTGA
AGGAGTCAACAGCCTGATTTTTGCTTAGTGTGGGCTATTTTGCAACCATG
GGAAGAGTATGGTCCCTGATGATTCAATAATTTTTTGTTTTTGGAAGAAA
AAATGTTGTTCAAATGAGAATGTTCAAAATGTTTTACTCTTTTTAGCCAT
AGACAATTGGATAAAATGTTCTTCCAAAGAAACTTTTCTTTGAGAGGCAT
TTCGCANATTTTGATGATTNNNAAGCGCTATGTATCCTAATTTTGCCACT
TAATTTGTTATAATGGAATTTTAAGTTGCATATTCTTCTTTGAGTGGACT
TTCTTGGATTCAAAGATGTCATTACATTTGGATATGAAATTTAAGTTTTT
TGTGTAAAAAAAAAAAAAAAAAAAAAAAAN
back to top