CK939284

Overview
NameCK939284
Unique NameCK939284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_RABIT (Cytochrome c OS=Oryctolagus cuniculus GN=CYCS PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.434e-32
Identity = 64/102 (62.75%), Postives = 78/102 (76.47%), Query Frame = 2
Query:   56 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 361
            G+ + G+KIF  KCAQCHTV KG  HK GPNL+GLFGR++G   G+SY+ ANK   + W E TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAVGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKDERADLIAYLKKAT 103          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_LAMGU (Cytochrome c OS=Lama guanicoe GN=CYCS PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.434e-32
Identity = 64/102 (62.75%), Postives = 79/102 (77.45%), Query Frame = 2
Query:   56 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 361
            G+ + G+KIF  KCAQCHTV KG  HK GPNL+GLFGR++G   G+SY+ ANK   + W E+TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAVGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKKAT 103          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_ESCGI (Cytochrome c OS=Eschrichtius gibbosus GN=CYCS PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.434e-32
Identity = 64/102 (62.75%), Postives = 79/102 (77.45%), Query Frame = 2
Query:   56 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 361
            G+ + G+KIF  KCAQCHTV KG  HK GPNL+GLFGR++G   G+SY+ ANK   + W E+TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAVGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKKAT 103          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_CAMDR (Cytochrome c OS=Camelus dromedarius GN=CYCS PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.434e-32
Identity = 64/102 (62.75%), Postives = 79/102 (77.45%), Query Frame = 2
Query:   56 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 361
            G+ + G+KIF  KCAQCHTV KG  HK GPNL+GLFGR++G   G+SY+ ANK   + W E+TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAVGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKKAT 103          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC2_XENLA (Cytochrome c, testis-specific OS=Xenopus laevis GN=cyct PE=3 SV=3)

HSP 1 Score: 139.813 bits (351), Expect = 1.434e-32
Identity = 62/103 (60.19%), Postives = 80/103 (77.67%), Query Frame = 2
Query:   56 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 364
            G+ + G+K+F  KC+QCHTV KG  HK GPNL+GLFGR++G   G+SY+ ANK   ++W+E TL  YL NPKKYIPGTKM+F G+KK  +R DLIAYLK+ST+
Sbjct:    2 GDVEKGKKVFVQKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAEGFSYTDANKNKGIVWDEDTLMVYLENPKKYIPGTKMIFAGIKKKGERQDLIAYLKQSTS 104          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_THELA (Cytochrome c OS=Thermomyces lanuginosus PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.872e-32
Identity = 66/112 (58.93%), Postives = 82/112 (73.21%), Query Frame = 2
Query:   26 KMASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 361
            K  SFE   PG+   G  +FKT+CAQCH+V +G  +K GPNL+GLFGR++G+  GYSY+ ANK   + W E TL+ YL NPKK+IPGTKM F GLKK +DR DLI YLKE+T
Sbjct:    2 KGGSFE---PGDASKGANLFKTRCAQCHSVEQGGANKIGPNLHGLFGRKTGSVEGYSYTDANKQAGITWNEDTLFEYLENPKKFIPGTKMAFGGLKKNKDRNDLITYLKEAT 110          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_STRCA (Cytochrome c OS=Struthio camelus GN=CYC PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.872e-32
Identity = 63/103 (61.17%), Postives = 79/103 (76.70%), Query Frame = 2
Query:   56 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 364
            G+ + G+KIF  KC+QCHTV KG  HK GPNL+GLFGR++G   G+SY+ ANK   + W E TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T+
Sbjct:    2 GDIEKGKKIFVQKCSQCHTVEKGGKHKTGPNLDGLFGRKTGQAEGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKSERADLIAYLKDATS 104          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_SCHPO (Cytochrome c OS=Schizosaccharomyces pombe GN=cyc1 PE=1 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 1.872e-32
Identity = 60/104 (57.69%), Postives = 80/104 (76.92%), Query Frame = 2
Query:   53 PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 364
            PG+ K G  +FKT+CAQCHTV KG  +K GPNL+G+FGR++G   G+SY+ AN+   + W+E+TL+ YL NPKKYIPGTKM F G KKP DR ++I YLK++T+
Sbjct:    5 PGDEKKGASLFKTRCAQCHTVEKGGANKVGPNLHGVFGRKTGQAEGFSYTEANRDKGITWDEETLFAYLENPKKYIPGTKMAFAGFKKPADRNNVITYLKKATS 108          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_RAT (Cytochrome c, somatic OS=Rattus norvegicus GN=Cycs PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.872e-32
Identity = 64/102 (62.75%), Postives = 78/102 (76.47%), Query Frame = 2
Query:   56 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 361
            G+ + G+KIF  KCAQCHTV KG  HK GPNL+GLFGR++G   G+SY+ ANK   + W E TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAAGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKKAT 103          
BLAST of CK939284 vs. ExPASy Swiss-Prot
Match: CYC_MOUSE (Cytochrome c, somatic OS=Mus musculus GN=Cycs PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.872e-32
Identity = 64/102 (62.75%), Postives = 78/102 (76.47%), Query Frame = 2
Query:   56 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 361
            G+ + G+KIF  KCAQCHTV KG  HK GPNL+GLFGR++G   G+SY+ ANK   + W E TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAAGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKKAT 103          
The following BLAST results are available for this feature:
BLAST of CK939284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
CYC_RABIT1.434e-3262.75Cytochrome c OS=Oryctolagus cuniculus GN=CYCS PE=1... [more]
CYC_LAMGU1.434e-3262.75Cytochrome c OS=Lama guanicoe GN=CYCS PE=1 SV=2[more]
CYC_ESCGI1.434e-3262.75Cytochrome c OS=Eschrichtius gibbosus GN=CYCS PE=1... [more]
CYC_CAMDR1.434e-3262.75Cytochrome c OS=Camelus dromedarius GN=CYCS PE=1 S... [more]
CYC2_XENLA1.434e-3260.19Cytochrome c, testis-specific OS=Xenopus laevis GN... [more]
CYC_THELA1.872e-3258.93Cytochrome c OS=Thermomyces lanuginosus PE=1 SV=1[more]
CYC_STRCA1.872e-3261.17Cytochrome c OS=Struthio camelus GN=CYC PE=1 SV=2[more]
CYC_SCHPO1.872e-3257.69Cytochrome c OS=Schizosaccharomyces pombe GN=cyc1 ... [more]
CYC_RAT1.872e-3262.75Cytochrome c, somatic OS=Rattus norvegicus GN=Cycs... [more]
CYC_MOUSE1.872e-3262.75Cytochrome c, somatic OS=Mus musculus GN=Cycs PE=1... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_G05 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939284 ID=CK939284; Name=CK939284; organism=Citrus sinensis; type=EST; length=730bp
GGGGAATTCGATTTTAACCACAATCAAAATGGCGTCGTTTGAGGAAGCTC
CACCTGGTAATCCAAAGGCCGGGGAGAAAATCTTCAAGACCAAGTGCGCT
CAGTGCCACACCGTCGTGAAAGGCGCTGGTCACAAACAAGGACCAAATTT
GAATGGACTTTTCGGGAGACAGTCCGGGACAACTCCCGGGTACTCCTATT
CAGCTGCTAACAAGGGTATGGCTGTTATTTGGGAAGAGAAAACGTTGTAC
AATTACTTGCTTAACCCCAAGAAGTATATTCCTGGAACAAAGATGGTCTT
CCCTGGATTGAAGAAGCCTCAGGATCGTGCAGACCTCATTGCCTATTTGA
AGGAGTCAACAGCCTGATTTTTGCTTAGTGTGGGCTATTTTGCAACCATG
GGAAGAGTATGGTCCCTGATGATTCAATAATTTTTTGTTTTTGGAAGAAA
AAATGTTGTTCAAATGAGAATGTTCAAAATGTTTTACTCTTTTTAGCCAT
AGACAATTGGATAAAATGTTCTTCCAAAGAAACTTTTCTTTGAGAGGCAT
TTCGCANATTTTGATGATTNNNAAGCGCTATGTATCCTAATTTTGCCACT
TAATTTGTTATAATGGAATTTTAAGTTGCATATTCTTCTTTGAGTGGACT
TTCTTGGATTCAAAGATGTCATTACATTTGGATATGAAATTTAAGTTTTT
TGTGTAAAAAAAAAAAAAAAAAAAAAAAAN
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