CK939282

Overview
NameCK939282
Unique NameCK939282
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939282 vs. ExPASy Swiss-Prot
Match: DYR1B_MOUSE (Dual specificity tyrosine-phosphorylation-regulated kinase 1B OS=Mus musculus GN=Dyrk1b PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.449e-11
Identity = 44/144 (30.56%), Postives = 74/144 (51.39%), Query Frame = 1
Query:  301 DEGTEDYRRGGYHAVRIGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGL 732
            D+   DY       VR G+ +   RY + S +G G F  V  A+D QT   VA+K+ K+ + +   A  E+++L+ + + D + K  +V L  HF        H+C+VFE L  NL  L++   +RGV L++ +++   +   L
Sbjct:   93 DDDNHDY------IVRSGERWLE-RYEIDSLIGKGSFGQVVKAYDHQTQELVAIKIIKNKKAFLNQAQIELRLLELMNQHDTEMKYYIVHLKRHFMFRN----HLCLVFELLSYNLYDLLRNTHFRGVSLNLTRKLAQQLCTAL 225          
BLAST of CK939282 vs. ExPASy Swiss-Prot
Match: DYR1B_HUMAN (Dual specificity tyrosine-phosphorylation-regulated kinase 1B OS=Homo sapiens GN=DYRK1B PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.449e-11
Identity = 44/144 (30.56%), Postives = 74/144 (51.39%), Query Frame = 1
Query:  301 DEGTEDYRRGGYHAVRIGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGL 732
            D+   DY       VR G+ +   RY + S +G G F  V  A+D QT   VA+K+ K+ + +   A  E+++L+ + + D + K  +V L  HF        H+C+VFE L  NL  L++   +RGV L++ +++   +   L
Sbjct:   93 DDDNHDY------IVRSGERWLE-RYEIDSLIGKGSFGQVVKAYDHQTQELVAIKIIKNKKAFLNQAQIELRLLELMNQHDTEMKYYIVHLKRHFMFRN----HLCLVFELLSYNLYDLLRNTHFRGVSLNLTRKLAQQLCTAL 225          
BLAST of CK939282 vs. ExPASy Swiss-Prot
Match: CLK3_RAT (Dual specificity protein kinase CLK3 OS=Rattus norvegicus GN=Clk3 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.472e-11
Identity = 52/163 (31.90%), Postives = 77/163 (47.24%), Query Frame = 1
Query:  259 SNGDRSDVSDYTSEDEGTEDYRRGGYHAVRIGDTFKNGRYVVQSKLGWGHFSTVWLAWD-TQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDXXH 744
            S   RS  S   S     +D  + G+   RIGD  +  RY +   LG G F  V    D  +    VALK+ ++   Y EAA  EI +LK+I E D ++K   V + D F   G    H+C+ FE LG+N    +K  +++  PL  V+ + + +   L   H
Sbjct:  120 SASSRSQQSSKRSSRSVEDD--KEGHLVCRIGDWLQE-RYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHG----HMCIAFELLGKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLH 275          
BLAST of CK939282 vs. ExPASy Swiss-Prot
Match: CLK3_MOUSE (Dual specificity protein kinase CLK3 OS=Mus musculus GN=Clk3 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.472e-11
Identity = 52/163 (31.90%), Postives = 77/163 (47.24%), Query Frame = 1
Query:  259 SNGDRSDVSDYTSEDEGTEDYRRGGYHAVRIGDTFKNGRYVVQSKLGWGHFSTVWLAWD-TQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDXXH 744
            S   RS  S   S     +D  + G+   RIGD  +  RY +   LG G F  V    D  +    VALK+ ++   Y EAA  EI +LK+I E D ++K   V + D F   G    H+C+ FE LG+N    +K  +++  PL  V+ + + +   L   H
Sbjct:  268 SASSRSQQSSKRSSRSVEDD--KEGHLVCRIGDWLQE-RYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHG----HMCIAFELLGKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLH 423          
BLAST of CK939282 vs. ExPASy Swiss-Prot
Match: CLK3_HUMAN (Dual specificity protein kinase CLK3 OS=Homo sapiens GN=CLK3 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.472e-11
Identity = 52/163 (31.90%), Postives = 77/163 (47.24%), Query Frame = 1
Query:  259 SNGDRSDVSDYTSEDEGTEDYRRGGYHAVRIGDTFKNGRYVVQSKLGWGHFSTVWLAWD-TQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDXXH 744
            S   RS  S   S     +D  + G+   RIGD  +  RY +   LG G F  V    D  +    VALK+ ++   Y EAA  EI +LK+I E D ++K   V + D F   G    H+C+ FE LG+N    +K  +++  PL  V+ + + +   L   H
Sbjct:  268 SASSRSQQSSKRSSRSVEDD--KEGHLVCRIGDWLQE-RYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHG----HMCIAFELLGKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLH 423          
BLAST of CK939282 vs. ExPASy Swiss-Prot
Match: CLK3_BOVIN (Dual specificity protein kinase CLK3 OS=Bos taurus GN=CLK3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.472e-11
Identity = 52/163 (31.90%), Postives = 77/163 (47.24%), Query Frame = 1
Query:  259 SNGDRSDVSDYTSEDEGTEDYRRGGYHAVRIGDTFKNGRYVVQSKLGWGHFSTVWLAWD-TQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDXXH 744
            S   RS  S   S     +D  + G+   RIGD  +  RY +   LG G F  V    D  +    VALK+ ++   Y EAA  EI +LK+I E D ++K   V + D F   G    H+C+ FE LG+N    +K  +++  PL  V+ + + +   L   H
Sbjct:  120 SASSRSQQSSKRSSRSVEDD--KEGHLVCRIGDWLQE-RYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHG----HMCIAFELLGKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLH 275          
BLAST of CK939282 vs. ExPASy Swiss-Prot
Match: MBK2_CAEEL (Dual specificity tyrosine-phosphorylation-regulated kinase mbk-2 OS=Caenorhabditis elegans GN=mbk-2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.228e-11
Identity = 40/121 (33.06%), Postives = 64/121 (52.89%), Query Frame = 1
Query:  373 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLD 735
            RY V   +G G F  V  A+D +   YVALK+ ++ + +   A +EI+IL  +   D D    ++ +LD+F        H C+ FE L  NL  LIK   ++G  L +V++  + +L+ LD
Sbjct:  460 RYEVLKVIGKGSFGQVIKAFDHKYQQYVALKLVRNEKRFHRQADEEIRILDHLRRQDSDGTHNIIHMLDYFNFRN----HKCITFELLSINLYELIKRNKFQGFSLMLVRKFAYSMLLCLD 576          
BLAST of CK939282 vs. ExPASy Swiss-Prot
Match: MBK2_CAEBR (Dual specificity tyrosine-phosphorylation-regulated kinase mbk-2 OS=Caenorhabditis briggsae GN=mbk-2 PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.228e-11
Identity = 40/121 (33.06%), Postives = 64/121 (52.89%), Query Frame = 1
Query:  373 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLD 735
            RY V   +G G F  V  A+D +   YVALK+ ++ + +   A +EI+IL  +   D D    ++ +LD+F        H C+ FE L  NL  LIK   ++G  L +V++  + +L+ LD
Sbjct:  459 RYEVLKVIGKGSFGQVIKAFDHKYQQYVALKLVRNEKRFHRQADEEIRILDHLRRQDSDGTHNIIHMLDYFNFRN----HKCITFELLSINLYELIKRNKFQGFSLMLVRKFAYSMLLCLD 575          
BLAST of CK939282 vs. ExPASy Swiss-Prot
Match: MBK1_CAEEL (Dual specificity tyrosine-phosphorylation-regulated kinase mbk-1 OS=Caenorhabditis elegans GN=mbk-1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.228e-11
Identity = 46/132 (34.85%), Postives = 67/132 (50.76%), Query Frame = 1
Query:  331 GYHAVRIGDTFKNG-----RYVVQSK--LGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKE 705
            GY         KNG     RYV+ S   +G G F  V  A+DT     VA+K+ K+ + + + A  EI +L+     D D+K  +V L  HF H      H+C+VFE L  NL  L+K   +RGV L++ ++
Sbjct:  306 GYDDQNYDYILKNGEIFDKRYVILSDTPVGKGSFGQVTKAYDTLNKEEVAIKIIKNKKTFFDQAQIEIHLLELTNAHDKDNKYNIVTLKGHFVHRA----HLCLVFELLSYNLYDLLKNTSFRGVSLNLARK 433          
BLAST of CK939282 vs. ExPASy Swiss-Prot
Match: PRP4_SCHPO (Serine/threonine-protein kinase prp4 OS=Schizosaccharomyces pombe GN=prp4 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.191e-11
Identity = 42/136 (30.88%), Postives = 72/136 (52.94%), Query Frame = 1
Query:  331 GYHAVRIGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLI-KYADYRGVPLHMVKEICFHILVGLD 735
            GY+ V + +   + RY+VQS LG G FSTV  A D   +   A+K+ ++ +   +  L E+ IL+++   D + K+ ++    HF H      H+CMVFE L  NL  ++ K+    G+ +  V+   + + + LD
Sbjct:  145 GYYKVVLMEEL-DSRYIVQSNLGKGMFSTVVSALDRNRNQTFAIKIIRNNEVMYKEGLKEVSILERLQAADREGKQHIIHYERHFMHK----NHLCMVFEMLSLNLRDILKKFGRNVGLSIKAVRLYAYQMFMALD 275          
The following BLAST results are available for this feature:
BLAST of CK939282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
DYR1B_MOUSE1.449e-1130.56Dual specificity tyrosine-phosphorylation-regulate... [more]
DYR1B_HUMAN1.449e-1130.56Dual specificity tyrosine-phosphorylation-regulate... [more]
CLK3_RAT2.472e-1131.90Dual specificity protein kinase CLK3 OS=Rattus nor... [more]
CLK3_MOUSE2.472e-1131.90Dual specificity protein kinase CLK3 OS=Mus muscul... [more]
CLK3_HUMAN2.472e-1131.90Dual specificity protein kinase CLK3 OS=Homo sapie... [more]
CLK3_BOVIN2.472e-1131.90Dual specificity protein kinase CLK3 OS=Bos taurus... [more]
MBK2_CAEEL3.228e-1133.06Dual specificity tyrosine-phosphorylation-regulate... [more]
MBK2_CAEBR3.228e-1133.06Dual specificity tyrosine-phosphorylation-regulate... [more]
MBK1_CAEEL3.228e-1134.85Dual specificity tyrosine-phosphorylation-regulate... [more]
PRP4_SCHPO7.191e-1130.88Serine/threonine-protein kinase prp4 OS=Schizosacc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004752_G01 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939282 ID=CK939282; Name=CK939282; organism=Citrus sinensis; type=EST; length=744bp
GGGGGGAGTACCCCTCTCTCAAGAACCCTAAATCCTCATTTCCTCCGCCA
CTAGTACACCAATCAATCAACTGCCCAAAAAGATTAATCTCGAAAGTCTT
TAATTTTTCTATATCGTGAGAATTTAGAAGAAAATAAAATTCAAACTCAA
TCAAAAACAGCTGAAGATCGATAAAAAATCGACCTTTATCTGATAATTCA
ACCAAAAAAAAGAAAGCAAAAACACTCTCATTTTGGCATATGAGTAATGG
CGGAAGATAGTAATGGAGATCGAAGTGATGTAAGTGATTACACGTCAGAG
GATGAGGGAACGGAGGATTACAGGAGAGGAGGGTACCATGCAGTGCGTAT
TGGTGATACTTTCAAGAATGGTCGCTATGTAGTTCAAAGCAAGCTTGGCT
GGGGCCATTTCTCCACCGTTTGGCTCGCTTGGGATACTCAAACTTCTCAT
TATGTAGCTTTGAAAGTCCAGAAGAGTGCTCAGCACTACACTGAGGCAGC
TTTGGATGAGATAAAGATCCTCAAACAGATAGCTGAGGGAGACCCAGATG
ATAAAAAGTGTGTTGTGAAGCTTTTAGATCACTTTAAGCATTCAGGGCCG
AATGGGCAGCATGTGTGTATGGTTTTCGAGTACTTGGGAGAGAATCTTCT
GACGCTCATTAAGTATGCAGATTATCGTGGGGTTCCTTTACACATGGTCA
AAGAAATTTGTTTTCATATTTTGGTGGGTTTAGATCANNNGCAT
back to top