CK939282

Overview
NameCK939282
Unique NameCK939282
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939282 vs. ExPASy Swiss-Prot
Match: PRP4B_PONAB (Serine/threonine-protein kinase PRP4 homolog OS=Pongo abelii GN=PRPF4B PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.191e-11
Identity = 46/136 (33.82%), Postives = 71/136 (52.21%), Query Frame = 1
Query:  331 GYHAVRIGDTFKNGRYVVQSKLGWGHFSTVWLAWDT-QTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLI-KYADYRGVPLHMVKEICFHILVGL 732
            GY+ V IG+     RY V    G G FS V  A D  + S  VA+K+ ++ +   +  L E++ LK++ + DPDDK   ++L  HF H     QH+C+VFE L  NL  ++ KY    G+ +  V+     + + L
Sbjct:  673 GYYRVNIGEVLDK-RYNVYGYTGQGVFSNVVRARDNARASQEVAVKIIRNNELMQKTGLKELEFLKKLNDADPDDKFHCLRLFRHFYHK----QHLCLVFEPLSMNLREVLKKYGKDVGLHIKAVRSYSQQLFLAL 803          
BLAST of CK939282 vs. ExPASy Swiss-Prot
Match: DYRK3_RAT (Dual specificity tyrosine-phosphorylation-regulated kinase 3 OS=Rattus norvegicus GN=Dyrk3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.392e-11
Identity = 40/124 (32.26%), Postives = 63/124 (50.81%), Query Frame = 1
Query:  373 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDXXH 744
            RY V   +G G F  V   +D +   YVALK+ ++ + +   A +EI+IL+ + + D      V+ +L+ F        HVCM FE L  +L  LIK   ++G  + +V++    IL  LD  H
Sbjct:  207 RYEVLKIIGKGSFGQVARVYDHKLRQYVALKMVRNEKRFHRQAAEEIRILEHLKKQDKTGSMNVIHMLESFTFRN----HVCMAFELLSIDLYELIKKNKFQGFSVQLVRKFAQSILQSLDALH 326          
BLAST of CK939282 vs. ExPASy Swiss-Prot
Match: DYRK3_MOUSE (Dual specificity tyrosine-phosphorylation-regulated kinase 3 OS=Mus musculus GN=Dyrk3 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.392e-11
Identity = 40/124 (32.26%), Postives = 63/124 (50.81%), Query Frame = 1
Query:  373 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDXXH 744
            RY V   +G G F  V   +D +   YVALK+ ++ + +   A +EI+IL+ + + D      V+ +L+ F        HVCM FE L  +L  LIK   ++G  + +V++    IL  LD  H
Sbjct:  207 RYEVLKIIGKGSFGQVARVYDHKLRQYVALKMVRNEKRFHRQAAEEIRILEHLKKQDKTGSMNVIHMLESFTFRN----HVCMAFELLSIDLYELIKKNKFQGFSVQLVRKFAQSILQSLDALH 326          
BLAST of CK939282 vs. ExPASy Swiss-Prot
Match: DYRK3_MACFA (Dual specificity tyrosine-phosphorylation-regulated kinase 3 OS=Macaca fascicularis GN=DYRK3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.392e-11
Identity = 40/124 (32.26%), Postives = 63/124 (50.81%), Query Frame = 1
Query:  373 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDXXH 744
            RY V   +G G F  V   +D +   YVALK+ ++ + +   A +EI+IL+ + + D      V+ +L+ F        HVCM FE L  +L  LIK   ++G  + +V++    IL  LD  H
Sbjct:  188 RYEVLKIIGKGSFGQVARVYDHKLRQYVALKMVRNEKRFHRQAAEEIRILEHLKKQDKTGSMNVIHMLESFTFRN----HVCMAFELLSIDLYELIKKNKFQGFSVQLVRKFAQSILQSLDALH 307          
BLAST of CK939282 vs. ExPASy Swiss-Prot
Match: DYRK3_HUMAN (Dual specificity tyrosine-phosphorylation-regulated kinase 3 OS=Homo sapiens GN=DYRK3 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 9.392e-11
Identity = 40/124 (32.26%), Postives = 63/124 (50.81%), Query Frame = 1
Query:  373 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDXXH 744
            RY V   +G G F  V   +D +   YVALK+ ++ + +   A +EI+IL+ + + D      V+ +L+ F        HVCM FE L  +L  LIK   ++G  + +V++    IL  LD  H
Sbjct:  208 RYEVLKIIGKGSFGQVARVYDHKLRQYVALKMVRNEKRFHRQAAEEIRILEHLKKQDKTGSMNVIHMLESFTFRN----HVCMAFELLSIDLYELIKKNKFQGFSVQLVRKFAQSILQSLDALH 327          
The following BLAST results are available for this feature:
BLAST of CK939282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
PRP4B_PONAB7.191e-1133.82Serine/threonine-protein kinase PRP4 homolog OS=Po... [more]
DYRK3_RAT9.392e-1132.26Dual specificity tyrosine-phosphorylation-regulate... [more]
DYRK3_MOUSE9.392e-1132.26Dual specificity tyrosine-phosphorylation-regulate... [more]
DYRK3_MACFA9.392e-1132.26Dual specificity tyrosine-phosphorylation-regulate... [more]
DYRK3_HUMAN9.392e-1132.26Dual specificity tyrosine-phosphorylation-regulate... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_G01 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939282 ID=CK939282; Name=CK939282; organism=Citrus sinensis; type=EST; length=744bp
GGGGGGAGTACCCCTCTCTCAAGAACCCTAAATCCTCATTTCCTCCGCCA
CTAGTACACCAATCAATCAACTGCCCAAAAAGATTAATCTCGAAAGTCTT
TAATTTTTCTATATCGTGAGAATTTAGAAGAAAATAAAATTCAAACTCAA
TCAAAAACAGCTGAAGATCGATAAAAAATCGACCTTTATCTGATAATTCA
ACCAAAAAAAAGAAAGCAAAAACACTCTCATTTTGGCATATGAGTAATGG
CGGAAGATAGTAATGGAGATCGAAGTGATGTAAGTGATTACACGTCAGAG
GATGAGGGAACGGAGGATTACAGGAGAGGAGGGTACCATGCAGTGCGTAT
TGGTGATACTTTCAAGAATGGTCGCTATGTAGTTCAAAGCAAGCTTGGCT
GGGGCCATTTCTCCACCGTTTGGCTCGCTTGGGATACTCAAACTTCTCAT
TATGTAGCTTTGAAAGTCCAGAAGAGTGCTCAGCACTACACTGAGGCAGC
TTTGGATGAGATAAAGATCCTCAAACAGATAGCTGAGGGAGACCCAGATG
ATAAAAAGTGTGTTGTGAAGCTTTTAGATCACTTTAAGCATTCAGGGCCG
AATGGGCAGCATGTGTGTATGGTTTTCGAGTACTTGGGAGAGAATCTTCT
GACGCTCATTAAGTATGCAGATTATCGTGGGGTTCCTTTACACATGGTCA
AAGAAATTTGTTTTCATATTTTGGTGGGTTTAGATCANNNGCAT
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