CK939227

Overview
NameCK939227
Unique NameCK939227
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK939227 vs. ExPASy Swiss-Prot
Match: RS37_YEAST (40S ribosomal protein S31 OS=Saccharomyces cerevisiae GN=UBI3 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.539e-12
Identity = 32/49 (65.31%), Postives = 36/49 (73.47%), Query Frame = 3 
Query:  351 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTY 497
            LAVL +YKVD  GKV +LR+EC N  CGAG F+ANH DR YCGKC   Y
Sbjct:   24 LAVLSYYKVDAEGKVTKLRRECSNPTCGAGVFLANHKDRLYCGKCHSVY 72
[Close]
BLAST of CK939227 vs. ExPASy Swiss-Prot
Match: RS27A_DICDI (40S ribosomal protein S27a OS=Dictyostelium discoideum GN=ubqC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.303e-11
Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 3 
Query:  351 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYV 500
            LAVL++YK D++GK++R+ +ECP   CGAG FMA H +R YCGKC  T V
Sbjct:   25 LAVLKYYKFDENGKIKRVLRECPAETCGAGVFMAQHANRQYCGKCHSTLV 74
[Close]
BLAST of CK939227 vs. ExPASy Swiss-Prot
Match: ANUB1_HUMAN (AN1-type zinc finger and ubiquitin domain-containing protein 1 OS=Homo sapiens GN=ANUBL1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = 3 
Query:   54 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 281
            M++F++TLTG    L V   +T+ +VKAKI+  EGIP  +Q LI+   +LE+   L DYNI +  TL LVL +RGG
Sbjct:   28 MELFIETLTGTCFELRVSPFETVISVKAKIRRLEGIPICRQHLIWNNMELENDYCLNDYNISEGCTLKLVLAMRGG 103
The following BLAST results are available for this feature:
BLAST of CK939227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
RS37_YEAST1.539e-1265.3140S ribosomal protein S31 OS=Saccharomyces cerevis... [more]
RS27A_DICDI1.303e-1158.0040S ribosomal protein S27a OS=Dictyostelium discoi... [more]
ANUB1_HUMAN4.952e-1147.37AN1-type zinc finger and ubiquitin domain-containi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004432_F08 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IF_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939227 ID=CK939227; Name=CK939227; organism=Citrus sinensis; type=EST; length=703bp
GGGGCATCCTTTTATTTCACTGAAATTTGCTGGGTCTCTCCTCATCTGCA
GCCATGCAGATCTTCGTGAAAACCCTAACGGGAAAGACCATAACCCTAGA
GGTCGAATCATCGGACACCATCGACAATGTCAAGGCCAAGATCCAGGACA
AGGAGGGGATTCCACCGGACCAGCAGCGTCTCATCTTCGCCGGAAAGCAG
CTCGAGGACGGCAGAACCCTAGCCGACTACAACATCCAAAAGGAGTCAAC
ACTCCACCTCGTCCTCCGTCTCCGTGGTGGCGCGAAGAAGCGTAAGAAGA
AGACCTACACCAAGCCGAAAAAGATCAAGCACAAGAAGAAGAAGGTCAAG
CTCGCCGTCTTGCAGTTTTACAAGGTCGATGATTCTGGAAAGGTCCAGAG
GCTGAGGAAGGAGTGTCCGAATGCTGAGTGTGGAGCCGGCACCTTCATGG
CTAACCACTTTGACAGGCACTACTGCGGCAAGTGTGGACTCACCTATGTT
TACCAGAAGGCTGGCGGTGATTGATCGAGATTAGGTGGTTGTTTTGCTAT
TTTTAATTAGTATTAATTACTATGGTTTTTGTGGTTCAAAAATTATGACT
CTTTCGTAATTTTGTTTGACTATATACTTGTTTGCTGGAGCGTTTTAATT
AAATGGTTATCTGTTTTAAATTCCAAAAAAAAAAANAAAAAAAAAAAAAA
AAA
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