CK939225

Overview
NameCK939225
Unique NameCK939225
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939225 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.544e-13
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 2
Query:  215 YKGIRMRKWRKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDDLRDVSAASIRK 442
            Y+GIR R W KW AEIR+P + +RIWLG++ T   AARAYD A   +RG  A++NFPE   + +  +    A+++K
Sbjct:  125 YRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNFPEENMKANSQKRSVKANLQK 200          
BLAST of CK939225 vs. ExPASy Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.544e-13
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2
Query:  215 YKGIRMRKWRKWVAEIREPNKR-SRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELI 394
            Y+G+R R W K+ AEIR+P K  +R+WLG+Y TP  AA AYD A F LRG  A+LNFP LI
Sbjct:   92 YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFPHLI 152          
BLAST of CK939225 vs. ExPASy Swiss-Prot
Match: ERF83_ARATH (Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.544e-13
Identity = 32/57 (56.14%), Postives = 44/57 (77.19%), Query Frame = 2
Query:  215 YKGIRMRKWRKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFP 385
            Y+G+R R W ++ AEIR+P K+SR+WLG++ + + AARAYDTA   LRGP A+ NFP
Sbjct:   27 YRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAVDAARAYDTAARNLRGPKAKTNFP 83          
BLAST of CK939225 vs. ExPASy Swiss-Prot
Match: DRE2F_ARATH (Dehydration-responsive element-binding protein 2F OS=Arabidopsis thaliana GN=DREB2F PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.544e-13
Identity = 35/59 (59.32%), Postives = 40/59 (67.80%), Query Frame = 2
Query:  215 YKGIRMRKWRKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPEL 391
            Y+G+R R W KWVAEIREP KR+R+WLGS+ T   AA AYD A   L G  A LN P L
Sbjct:   28 YRGVRQRTWGKWVAEIREPKKRARLWLGSFATAEEAAMAYDEAALKLYGHDAYLNLPHL 86          
BLAST of CK939225 vs. ExPASy Swiss-Prot
Match: DRE1B_ARATH (Dehydration-responsive element-binding protein 1B OS=Arabidopsis thaliana GN=DREB1B PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.544e-13
Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = 2
Query:  215 YKGIRMRKWRKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDDLRDVSAASIRKKATE 454
            Y+G+R R   KWV+E+REPNK++RIWLG++ T   AARA+D A   LRG SA LNF +  ++        A  I+K A E
Sbjct:   48 YRGVRQRNSGKWVSEVREPNKKTRIWLGTFQTAEMAARAHDVAALALRGRSACLNFADSAWRLRIPESTCAKDIQKAAAE 127          
BLAST of CK939225 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.322e-13
Identity = 34/58 (58.62%), Postives = 41/58 (70.69%), Query Frame = 2
Query:  215 YKGIRMRKWRKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPE 388
            Y+GIR R W KW AEIR+P K SR WLG++ T   AARAYD A   +RG  A++NFPE
Sbjct:  128 YRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFPE 185          
BLAST of CK939225 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.339e-13
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 2
Query:  215 YKGIRMRKWRKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPEL 391
            Y+GIR R W KW AEIR+P K  R+WLG++ T   AA AYD A   +RG  A+LNFP+L
Sbjct:   79 YRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFPDL 137          
BLAST of CK939225 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.339e-13
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 2
Query:  215 YKGIRMRKWRKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELI 394
            Y+G+R R W KW AEIR+P K +R+WLG++ T  +AA AYD A    +G  A+LNFPE +
Sbjct:   90 YRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFPERV 149          
BLAST of CK939225 vs. ExPASy Swiss-Prot
Match: EF105_ARATH (Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.339e-13
Identity = 36/69 (52.17%), Postives = 47/69 (68.12%), Query Frame = 2
Query:  215 YKGIRMRKWRKWVAEIREPNKRS-RIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDDLRD 418
            Y+G+R R W K+ AEIR+PNK+  R+WLG++ T + AAR YD A F LRG  A LNFP    + +DL D
Sbjct:   72 YRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFPLEAGKHEDLGD 140          
BLAST of CK939225 vs. ExPASy Swiss-Prot
Match: EF104_ARATH (Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.339e-13
Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 2
Query:  215 YKGIRMRKWRKWVAEIREPNKRS-RIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFP 385
            Y+G+R R W K+ AEIR+PNK+  RIWLG+Y T + A RAYD A F LRG  A LNFP
Sbjct:   88 YRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNFP 145          
The following BLAST results are available for this feature:
BLAST of CK939225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
RA212_ARATH2.544e-1346.05Ethylene-responsive transcription factor RAP2-12 O... [more]
ERF99_ARATH2.544e-1359.02Ethylene-responsive transcription factor 13 OS=Ara... [more]
ERF83_ARATH2.544e-1356.14Ethylene-responsive transcription factor 7 OS=Arab... [more]
DRE2F_ARATH2.544e-1359.32Dehydration-responsive element-binding protein 2F ... [more]
DRE1B_ARATH2.544e-1347.50Dehydration-responsive element-binding protein 1B ... [more]
RAP22_ARATH3.322e-1358.62Ethylene-responsive transcription factor RAP2-2 OS... [more]
RAP23_ARATH4.339e-1355.93Ethylene-responsive transcription factor RAP2-3 OS... [more]
EF114_ARATH4.339e-1351.67Ethylene-responsive transcription factor ERF114 OS... [more]
EF105_ARATH4.339e-1352.17Ethylene-responsive transcription factor ERF105 OS... [more]
EF104_ARATH4.339e-1360.34Ethylene-responsive transcription factor ERF104 OS... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004432_F06 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939225 ID=CK939225; Name=CK939225; organism=Citrus sinensis; type=EST; length=861bp
GGGGGGCAATAAAAGTGGAGTCGCCTTAATTATTTTTGGGTTGGGCATCG
GTATGTGTCCCTCAGAACTCACAACAAGAAGAAAACTTTGATTAATTATC
TACGAAAACGACATGGAAGGAGGCGGGTGCTGCAGCACTTCGACTTCAAC
GAAAAGCCCAGAGAAGCGGAAGCCAAGGCAGCAGCGGCAACACCAACAGC
AGCAGGAAAAGCCGTACAAGGGGATAAGGATGAGGAAGTGGAGGAAGTGG
GTCGCTGAAATTAGAGAGCCTAACAAGAGATCCAGAATCTGGCTTGGTTC
TTACACCACGCCTATAGCCGCCGCACGTGCCTACGACACGGCCGTCTTCT
ATCTCCGGGGCCCTTCCGCTCGTCTTAACTTCCCCGAATTGATTTTCCAA
GAAGACGATCTTCGAGACGTTTCTGCCGCTTCAATACGCAAGAAAGCTAC
CGAAGTTGGCGCTAAGGTCGACGCTTTACAAGCTGCTCTCCATGCTGCTA
ATTCAGAATCTGAATCCAATTCCAATTCCAATTTCAATTCTATTCGATTG
TCCGAGAAGCCTGATTTAAACAAGTTTCCAGAGAGTTCTGATGAAGATTG
ATAACACAAAATACTTGCAAGCTCACAATTACCTACCCTAGTCTTTCCAC
GTTTACGTACTGTTTTATTCCCATCATCAGTTTCAACTTTGAAAACGTAC
GGAATCACAAGGATTCTGTTTCATATATTTATATTATATATAGGTCGATC
TTCTTAATTAGTATGTAACACGTACGACTGTTATTTATTTAGTTGATTAA
TTAGTTATGGTCTTAATTTTTGAGTTAACTAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA
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