CK939209

Overview
NameCK939209
Unique NameCK939209
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK939209 vs. ExPASy Swiss-Prot
Match: RAB7B_BOVIN (Ras-related protein Rab-7b OS=Bos taurus GN=RAB7B PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.419e-11
Identity = 33/77 (42.86%), Postives = 49/77 (63.64%), Query Frame = 3 
Query:  237 KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 464
            KL++IG  GVGK+SLL  +    F E+   T+G     K + +    LKL IWDT GQERFR++ S++Y+G+ G ++
Sbjct:   10 KLIIIGALGVGKTSLLHRYVHKTFYEDYQTTLGASILSKIIILEDTTLKLQIWDTGGQERFRSMVSTFYKGSDGCVL 86
[Close]
BLAST of CK939209 vs. ExPASy Swiss-Prot
Match: RAB6B_MOUSE (Ras-related protein Rab-6B OS=Mus musculus GN=Rab6b PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.419e-11
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 3 
Query:  234 FKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYR 443
            FKL+ +G+  VGK+SL+  F  D+F+     TIG+DF  K + +  + ++L +WDTAGQERFR+L  SY R
Sbjct:   14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 84
[Close]
BLAST of CK939209 vs. ExPASy Swiss-Prot
Match: RAB6B_HUMAN (Ras-related protein Rab-6B OS=Homo sapiens GN=RAB6B PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.419e-11
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 3 
Query:  234 FKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYR 443
            FKL+ +G+  VGK+SL+  F  D+F+     TIG+DF  K + +  + ++L +WDTAGQERFR+L  SY R
Sbjct:   14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 84
[Close]
BLAST of CK939209 vs. ExPASy Swiss-Prot
Match: RAB6B_CAEEL (Ras-related protein Rab-6.2 OS=Caenorhabditis elegans GN=rab-6.2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.419e-11
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 3 
Query:  234 FKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYR 443
            FKL+ +G+  VGK+SL+  F  D+F+     TIG+DF  K + +  + ++L +WDTAGQERFR+L  SY R
Sbjct:   11 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 81
[Close]
BLAST of CK939209 vs. ExPASy Swiss-Prot
Match: RAB6B_BOVIN (Ras-related protein Rab-6B OS=Bos taurus GN=RAB6B PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.419e-11
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 3 
Query:  234 FKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYR 443
            FKL+ +G+  VGK+SL+  F  D+F+     TIG+DF  K + +  + ++L +WDTAGQERFR+L  SY R
Sbjct:   14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 84
[Close]
BLAST of CK939209 vs. ExPASy Swiss-Prot
Match: RAB6A_PONAB (Ras-related protein Rab-6A OS=Pongo abelii GN=RAB6A PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 9.419e-11
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 3 
Query:  234 FKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYR 443
            FKL+ +G+  VGK+SL+  F  D+F+     TIG+DF  K + +  + ++L +WDTAGQERFR+L  SY R
Sbjct:   14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 84
[Close]
BLAST of CK939209 vs. ExPASy Swiss-Prot
Match: RAB6A_MOUSE (Ras-related protein Rab-6A OS=Mus musculus GN=Rab6a PE=1 SV=4)

HSP 1 Score: 67.781 bits (164), Expect = 9.419e-11
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 3 
Query:  234 FKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYR 443
            FKL+ +G+  VGK+SL+  F  D+F+     TIG+DF  K + +  + ++L +WDTAGQERFR+L  SY R
Sbjct:   14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 84
[Close]
BLAST of CK939209 vs. ExPASy Swiss-Prot
Match: RAB6A_HUMAN (Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6A PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 9.419e-11
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 3 
Query:  234 FKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYR 443
            FKL+ +G+  VGK+SL+  F  D+F+     TIG+DF  K + +  + ++L +WDTAGQERFR+L  SY R
Sbjct:   14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 84
The following BLAST results are available for this feature:
BLAST of CK939209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 358
Match NameE-valueIdentityDescription
RAB7B_BOVIN9.419e-1142.86Ras-related protein Rab-7b OS=Bos taurus GN=RAB7B ... [more]
RAB6B_MOUSE9.419e-1146.48Ras-related protein Rab-6B OS=Mus musculus GN=Rab6... [more]
RAB6B_HUMAN9.419e-1146.48Ras-related protein Rab-6B OS=Homo sapiens GN=RAB6... [more]
RAB6B_CAEEL9.419e-1146.48Ras-related protein Rab-6.2 OS=Caenorhabditis eleg... [more]
RAB6B_BOVIN9.419e-1146.48Ras-related protein Rab-6B OS=Bos taurus GN=RAB6B ... [more]
RAB6A_PONAB9.419e-1146.48Ras-related protein Rab-6A OS=Pongo abelii GN=RAB6... [more]
RAB6A_MOUSE9.419e-1146.48Ras-related protein Rab-6A OS=Mus musculus GN=Rab6... [more]
RAB6A_HUMAN9.419e-1146.48Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004432_H08 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IF_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939209 ID=CK939209; Name=CK939209; organism=Citrus sinensis; type=EST; length=882bp
GGGACTGCGACGACAACGATCGCGATCTCCATTTTCACCTTTTTCTGTGA
CCACAGTGAACAGATCCTACTTTTGCCTATCGTCTTTGTAATTCATTCAT
CAAATTTCAGTGCTGTTGAGGTGGTGGTGATTTTGGGGTTTGTGGGATTT
GGATTTTGGTGGCAGTTTTTGAGAAAGAGAGTCAAATTTAGATGGATTCA
TCATCAGCAAGTCAGCAAGAATTTGATTACTTGTTCAAGTTGTTGATGAT
TGGAGATTCTGGTGTTGGTAAAAGTAGTCTCCTATTGAGCTTCACTTCTG
ACAACTTTGAAGAGCTTTCGCCCACTATTGGTGTCGATTTTAAGGTGAAA
TATGTTGACGTTGGGGGGAAGAAATTGAAACTTGCAATTTGGGATACAGC
TGGTCAGGAGAGATTTCGGACATTGACTAGTTCATACTACAGGGGTGCAC
AAGGCATCATTATGGGTATTTAATTTCATCTTTTTAGTGTAGTTACTTTG
TTTATTTTTCAAGGAAAATTTCTGGCTAATGCCTCATTGAAGAACATTGT
TTAATGTTGAATTAACCTTTTCCAATGTATAGAGCATCTTGACTCTGTCT
GGGCTTTGTAGTAGCGATTTCATATTTTTCAGAGATTGGCTTATCCAAAT
TTATGATGTTACAAGGCGAGACACATTTACTAATCTTTCTGATGTATGGG
CTAAGGAAATTGACTTATACTCAACAAACCAAGATTGTATCAAATTGCTC
GTTGGAAACAAAGTTGATAAGGAAAGTGAAAGGGTTGTGACAAAGAAAGA
GGGCATAAACTTTGCGAGGGAATANGGATGCCCTTTTATTGAATGCAGTG
CTAAAACTCGTGTCAACGTACAGCAGTGCTTT
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